UHGV-0013265 (vOTU-042680)

Viral Genome: UHGV-0013265

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0013265
vOTU ID	vOTU-042680
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_C_6_1128__k127_103624__flag_3__multi_198.0000__len_38807
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9777
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.46
Jumbo phage	No

Genome content
Genome length (bp)	38,680
GC content	50.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	96%
Average CDS length (bps)	636.88
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0013265_1	phrog_27197	115.9	0	N/A	unknown function
COG	UHGV-0013265_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0013265_1	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0013265_3	phrog_14970	188.2	0	N/A	unknown function
UniRef90	UHGV-0013265_3	UniRef90_UPI0011AF792D	160.0	1.4013e-45	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0013265_3	428127.EUBDOL_01248	159.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0013265_3	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0013265_3	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0013265_3	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0013265_4	phrog_1389	65.1	9.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0013265_4	883156.HMPREF9282_01223	67.4	0.000000000000573	N/A	N/A
structural_annotation	UHGV-0013265_4	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0013265_5	phrog_7566	51.9	0.000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0013265_5	693746.OBV_24070	70.5	0.0000000000000341	N/A	N/A
KOfam	UHGV-0013265_6	K03111	128.2	1e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0013265_6	phrog_44	134.5	7.2e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013265_6	UniRef90_UPI001E2A5A6F	223.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0013265_6	1235835.C814_01372	125.0	6.54e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0013265_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0013265_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0013265_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0013265_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0013265_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0013265_7	phrog_9474	94.6	1.2e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013265_7	UniRef90_UPI001241A3FA	108.0	1.37e-24	phage replication protein	N/A
eggNOG-mapper	UHGV-0013265_7	742740.HMPREF9474_03117	109.0	7.27e-26	N/A	N/A
structural_annotation	UHGV-0013265_7	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-0013265_8	phrog_9804	166.8	0	N/A	unknown function
UniRef90	UHGV-0013265_8	UniRef90_UPI001E312ACC	298.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0013265_8	1121344.JHZO01000003_gene981	175.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0013265_8	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0013265_8	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0013265_9	K00571	105.9	4.6e-31	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0013265_9	phrog_67	95.9	7.8e-29	DNA methyltransferase	other
UniRef90	UHGV-0013265_9	UniRef90_A0A1C6E5W1	443.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0013265_9	1449342.JQMR01000001_gene1025	374.0	0	DNA modification methylase DNA replication, recombination, and repair	N/A
PADLOC	UHGV-0013265_9	MTase_II_00157	80.2	3.9e-24	Type II methyltransferase	RM
Pfam	UHGV-0013265_9	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0013265_9	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0013265_9	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0013265_10	K01160	69.5	8.3e-20	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0013265_10	phrog_34	72.3	7.4e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013265_10	UniRef90_UPI00131A3D1F	149.0	1.4013e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0013265_10	1567011.A0A0A7S133_9VIRU	53.9	0.000000105	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0013265_10	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0013265_10	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
Pfam	UHGV-0013265_12	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0013265_12	TIGR04381	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013265_18	UniRef90_A0A8D9PDT5	53.1	0.00000128	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-0013265_20	phrog_36	50.4	0.000000000000047	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013265_20	UniRef90_UPI001C10AB33	109.0	6.14e-28	N/A	N/A
eggNOG-mapper	UHGV-0013265_20	580331.Thit_1400	81.3	1.38e-17	N/A	N/A
structural_annotation	UHGV-0013265_20	PF07374,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013265_21	1235798.C817_04600	76.6	0.00000000000000158	N/A	N/A
PHROG	UHGV-0013265_23	phrog_7339	103.4	1.8e-30	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013265_23	UniRef90_A0A2V2GLL9	436.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0013265_23	1150474.JQJI01000006_gene784	93.2	9.78e-20	metallophosphoesterase	N/A
Pfam	UHGV-0013265_23	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0013265_23	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0013265_23	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013265_24	UniRef90_A0A8D9UHF6	168.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013265_24	272630.MexAM1_META1p3985	55.8	0.00000000922	N/A	N/A
KOfam	UHGV-0013265_25	K06909	143.1	2.40042e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0013265_25	phrog_979	167.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0013265_25	UniRef90_A0A8D9UH35	923.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0013265_25	1232449.BAHV02000016_gene1824	475.0	0	N/A	N/A
Pfam	UHGV-0013265_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0013265_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0013265_25	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0013265_27	phrog_156	170.2	0	portal protein	head and packaging
UniRef90	UHGV-0013265_27	UniRef90_A0A8D9UHD1	1112.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0013265_27	1121091.AUMP01000003_gene2583	362.0	0	N/A	N/A
structural_annotation	UHGV-0013265_27	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013265_28	UniRef90_A0A8D9UHD6	117.0	1.6e-33	Ogr/Delta-like zinc finger	N/A
structural_annotation	UHGV-0013265_28	PF20020	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013265_29	UniRef90_A0A8D9UHB9	414.0	0	Non-structural protein 5	N/A
PHROG	UHGV-0013265_30	phrog_1357	243.8	0	major head protein	head and packaging
UniRef90	UHGV-0013265_30	UniRef90_A0A8D9UHB3	598.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0013265_30	696281.Desru_1092	291.0	0	N/A	N/A
NCBIFam	UHGV-0013265_30	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0013265_30	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0013265_31	phrog_15239	42.1	0.0000000000099	N/A	unknown function
PHROG	UHGV-0013265_33	phrog_3287	131.1	5.3e-39	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0013265_33	665956.HMPREF1032_03917	475.0	0	N/A	N/A
structural_annotation	UHGV-0013265_33	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-0013265_34	K19719	113.5	3.8e-34	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0013265_34	phrog_819	175.1	0	tail protein	tail
UniRef90	UHGV-0013265_34	UniRef90_A0A8D9PE13	597.0	0	Virion structural protein	N/A
Pfam	UHGV-0013265_34	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0013265_34	COG4675	N/A	N/A	Phage tail collar domain	N/A
KOfam	UHGV-0013265_35	K20285	50.9	4.1e-20	RABEPK; Rab9 effector protein with kelch motifs	N/A
PHROG	UHGV-0013265_35	phrog_16120	47.2	4.5e-18	virion structural protein	head and packaging
Pfam	UHGV-0013265_35	PF01344	N/A	N/A	Kelch motif	Kelch_1
Pfam	UHGV-0013265_35	PF13964	N/A	N/A	Kelch motif	Kelch_6
structural_annotation	UHGV-0013265_35	PF16472,MF_01195,TIGR03548,COG3055	N/A	N/A	N/A	N/A
Pfam	UHGV-0013265_36	PF13964	N/A	N/A	Kelch motif	Kelch_6
structural_annotation	UHGV-0013265_36	PF16472,MF_01195,TIGR03548,COG3055	N/A	N/A	N/A	N/A
PHROG	UHGV-0013265_38	phrog_2310	57.5	1.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0013265_38	1415774.U728_3409	51.6	0.000000027	N/A	N/A
PHROG	UHGV-0013265_39	phrog_1863	64.5	9.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0013265_39	718252.FP2_04900	74.7	1.37e-16	N/A	N/A
eggNOG-mapper	UHGV-0013265_40	1347392.CCEZ01000017_gene1158	53.5	0.0000000845	N/A	N/A
KOfam	UHGV-0013265_41	K01448	59.7	4.4e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0013265_41	phrog_435	73.7	3.1e-21	endolysin	lysis
UniRef90	UHGV-0013265_41	UniRef90_A0A2V2GRI9	472.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0013265_41	994573.T472_0210960	95.5	3.19e-21	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0013265_41	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0013265_41	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0013265_41	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013265_42	MF_01304	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013265_43	UniRef90_A0A8D9UHE1	3148.0	0	PolyVal ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0013265_43	1408437.JNJN01000060_gene452	439.0	0	heme binding	N/A
COG	UHGV-0013265_43	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-0013265_45	K14059	200.7	0	int; integrase	N/A
PHROG	UHGV-0013265_45	phrog_1	181.1	0	integrase	integration and excision
UniRef90	UHGV-0013265_45	UniRef90_A0A8D9PE11	709.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0013265_45	1507.HMPREF0262_00307	200.0	0	Phage integrase family	N/A
Pfam	UHGV-0013265_45	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0013265_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0013265_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0013265_45	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013265_48	UniRef90_A0A8D9PDX9	168.0	0	Histone H3.3 finger-like protein	N/A
UniRef90	UHGV-0013265_49	UniRef90_UPI001E2EC555	199.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0013265_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013265_49	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0013265_49	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0013265_50	phrog_8	48.4	0.00000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013265_50	UniRef90_UPI001E54DE4F	142.0	6.91961e-42	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0013265_50	1297617.JPJD01000059_gene2644	80.1	1.18e-17	addiction module antidote protein HigA	N/A
Pfam	UHGV-0013265_50	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0013265_50	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0013265_50	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013265_51	UniRef90_UPI001956DCC9	89.7	2.76e-22	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0013265_51	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013265_55	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0013265_58	phrog_4433	131.2	9.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0013265_58	767434.Fraau_1460	109.0	6.22e-28	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0013265_58	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A