UHGV-0013284 (vOTU-042683)

Viral Genome: UHGV-0013284

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0013284
vOTU ID	vOTU-042683
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_23_1060__NODE_1659_length_37813_cov_40.251881
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9807
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.66
Jumbo phage	No

Genome content
Genome length (bp)	37,736
GC content	51.40%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	95%
Average CDS length (bps)	637.98
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0013284_1	K14059	200.7	0	int; integrase	N/A
PHROG	UHGV-0013284_1	phrog_1	181.1	0	integrase	integration and excision
UniRef90	UHGV-0013284_1	UniRef90_A0A8D9PE11	709.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0013284_1	1507.HMPREF0262_00307	200.0	0	Phage integrase family	N/A
Pfam	UHGV-0013284_1	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0013284_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0013284_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0013284_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013284_4	UniRef90_A0A8D9PDX9	168.0	0	Histone H3.3 finger-like protein	N/A
UniRef90	UHGV-0013284_5	UniRef90_UPI001E2EC555	199.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0013284_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013284_5	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0013284_5	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_6	phrog_8	50.5	0.000000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013284_6	UniRef90_UPI001E54DE4F	100.0	2.78e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0013284_6	1507.HMPREF0262_00424	72.0	0.00000000000000787	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0013284_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0013284_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0013284_6	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013284_7	UniRef90_UPI001956DCC9	66.2	0.00000000000055	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0013284_7	PF10078,NF040507,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013284_11	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_15	phrog_14970	191.7	0	N/A	unknown function
UniRef90	UHGV-0013284_15	UniRef90_UPI00123F00F5	164.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0013284_15	428127.EUBDOL_01248	162.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0013284_15	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0013284_15	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0013284_15	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_16	phrog_72	55.1	8.5e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013284_16	UniRef90_A0A8D9PDS2	163.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0013284_16	445972.ANACOL_01825	139.0	2.64e-39	N/A	N/A
structural_annotation	UHGV-0013284_16	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_17	phrog_7566	51.8	0.000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0013284_17	693746.OBV_24070	69.7	0.0000000000000683	N/A	N/A
KOfam	UHGV-0013284_18	K03111	132.3	5.5e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0013284_18	phrog_44	132.4	3.1e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013284_18	UniRef90_UPI001E2A5A6F	236.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0013284_18	445972.ANACOL_01827	127.0	7.56e-36	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0013284_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0013284_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0013284_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0013284_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0013284_18	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_19	phrog_16304	88.2	1.1e-25	N/A	unknown function
UniRef90	UHGV-0013284_19	UniRef90_UPI001E560709	410.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013284_19	290402.Cbei_3733	61.6	0.0000000132	DnaD domain protein	N/A
Pfam	UHGV-0013284_19	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0013284_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0013284_19	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_20	phrog_9804	169.9	0	N/A	unknown function
UniRef90	UHGV-0013284_20	UniRef90_UPI001E312ACC	303.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0013284_20	1121344.JHZO01000003_gene981	179.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0013284_20	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0013284_20	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_21	phrog_954	193.9	0	DNA methyltransferase	other
UniRef90	UHGV-0013284_21	UniRef90_UPI00195B0EE7	268.0	0	methyltransferase domain-containing protein	N/A
eggNOG-mapper	UHGV-0013284_21	411461.DORFOR_01143	230.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0013284_21	MTase_II_00074	192.4	0	Type II methyltransferase	RM
Pfam	UHGV-0013284_21	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0013284_21	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0013284_21	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
KOfam	UHGV-0013284_22	K01160	68.6	1.6e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0013284_22	phrog_34	73.1	4.3e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013284_22	UniRef90_A0A498CNH4	152.0	1.4013e-45	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0013284_22	477974.Daud_0813	52.0	0.00000183	N/A	N/A
Pfam	UHGV-0013284_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0013284_22	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013284_24	TIGR04381	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_28	phrog_3777	81.7	4e-24	N/A	unknown function
UniRef90	UHGV-0013284_28	UniRef90_A0A417F883	142.0	6.26002e-41	N/A	N/A
eggNOG-mapper	UHGV-0013284_28	411462.DORLON_00813	69.7	0.000000000000298	N/A	N/A
Pfam	UHGV-0013284_28	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-0013284_28	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_32	phrog_36	44.7	0.0000000000021	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0013284_32	428125.CLOLEP_01806	74.3	0.00000000000000887	N/A	N/A
Pfam	UHGV-0013284_32	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0013284_32	PF07374,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013284_33	1235798.C817_04600	75.5	3.16e-16	N/A	N/A
structural_annotation	UHGV-0013284_33	NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_36	phrog_7339	102.3	3.9e-30	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013284_36	UniRef90_A0A2V2GLL9	436.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0013284_36	1150474.JQJI01000006_gene784	93.6	7.03e-20	metallophosphoesterase	N/A
Pfam	UHGV-0013284_36	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0013284_36	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0013284_36	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013284_37	UniRef90_A0A8D9UHF6	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013284_37	272630.MexAM1_META1p3985	57.0	0.00000000327	N/A	N/A
KOfam	UHGV-0013284_38	K06909	137.1	1.50001e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0013284_38	phrog_979	161.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0013284_38	UniRef90_A0A8D9UH35	907.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0013284_38	1232449.BAHV02000016_gene1824	484.0	0	N/A	N/A
Pfam	UHGV-0013284_38	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0013284_38	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0013284_38	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_39	phrog_156	169.2	0	portal protein	head and packaging
UniRef90	UHGV-0013284_39	UniRef90_A0A8D9UHD1	1111.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0013284_39	1121091.AUMP01000003_gene2583	368.0	0	N/A	N/A
Pfam	UHGV-0013284_39	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0013284_39	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013284_40	UniRef90_A0A8D9UHD6	119.0	3.91e-34	Ogr/Delta-like zinc finger	N/A
structural_annotation	UHGV-0013284_40	PF20020	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013284_41	UniRef90_A0A8D9UHB9	409.0	0	Non-structural protein 5	N/A
PHROG	UHGV-0013284_42	phrog_1357	241.3	0	major head protein	head and packaging
UniRef90	UHGV-0013284_42	UniRef90_A0A8D9UHB3	597.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0013284_42	696281.Desru_1092	289.0	0	N/A	N/A
NCBIFam	UHGV-0013284_42	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0013284_42	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_43	phrog_15239	42.1	0.0000000000099	N/A	unknown function
PHROG	UHGV-0013284_45	phrog_3287	128.0	4.7e-38	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0013284_45	665956.HMPREF1032_03917	471.0	0	N/A	N/A
structural_annotation	UHGV-0013284_45	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-0013284_46	K19721	162.5	0	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0013284_46	phrog_819	162.6	0	tail protein	tail
UniRef90	UHGV-0013284_46	UniRef90_A0A8D9PE13	710.0	0	Virion structural protein	N/A
Pfam	UHGV-0013284_46	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0013284_46	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0013284_49	PF13801,TIGR04116,COG5420	N/A	N/A	N/A	N/A
KOfam	UHGV-0013284_50	K06871	205.6	0	N/A	N/A
PHROG	UHGV-0013284_50	phrog_1802	167.4	0	radical SAM domain-containing protein	other
UniRef90	UHGV-0013284_50	UniRef90_A0A174B214	421.0	0	Anaerobic sulfatase-maturase	N/A
eggNOG-mapper	UHGV-0013284_50	457412.RSAG_01114	423.0	0	4Fe-4S single cluster domain	N/A
Pfam	UHGV-0013284_50	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
NCBIFam	UHGV-0013284_50	TIGR04115.1	N/A	N/A	radical SAM peptide maturase, CXXX-repeat target family	N/A
COG	UHGV-0013284_50	COG0641	N/A	N/A	Sulfatase maturation enzyme AslB, radical SAM superfamily	N/A
structural_annotation	UHGV-0013284_50	PF00962,MF_00660,TIGR04115,COG0641	N/A	N/A	N/A	N/A
PHROG	UHGV-0013284_51	phrog_1863	65.9	3.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0013284_51	718252.FP2_04900	78.6	4.14e-18	N/A	N/A
eggNOG-mapper	UHGV-0013284_52	1347392.CCEZ01000017_gene1158	50.4	0.00000132	N/A	N/A
KOfam	UHGV-0013284_53	K01448	59.7	4.4e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0013284_53	phrog_435	73.7	3.1e-21	endolysin	lysis
UniRef90	UHGV-0013284_53	UniRef90_A0A2V2GRI9	472.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0013284_53	994573.T472_0210960	95.5	3.19e-21	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0013284_53	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0013284_53	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0013284_53	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013284_54	MF_01304	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013284_55	UniRef90_A0A8D9UHE1	3148.0	0	PolyVal ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0013284_55	1408437.JNJN01000060_gene452	439.0	0	heme binding	N/A
COG	UHGV-0013284_55	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A