UHGV-0013603 (vOTU-033064)

Viral Genome: UHGV-0013603

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0013603
vOTU ID	vOTU-033064
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_A_12_1112__NODE_1585_length_33589_cov_5.376223
Associated BioSample	SAMEA4765572
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.59 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.78
Jumbo phage	No

Genome content
Genome length (bp)	33,589
GC content	51.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	94%
Average CDS length (bps)	565.45
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0013603_2	phrog_18725	71.8	4.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0013603_2	1226322.HMPREF1545_00062	94.7	1.33e-21	N/A	N/A
structural_annotation	UHGV-0013603_2	PF13754,COG2372	N/A	N/A	N/A	N/A
KOfam	UHGV-0013603_3	K01361	62.1	3.5e-18	E3.4.21.96; lactocepin [EC:3.4.21.96]	N/A
PHROG	UHGV-0013603_3	phrog_11157	241.1	0	N/A	unknown function
UniRef90	UHGV-0013603_3	UniRef90_UPI001C10C6DC	384.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0013603_3	476272.RUMHYD_02867	288.0	0	N/A	N/A
Pfam	UHGV-0013603_3	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0013603_3	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
NCBIFam	UHGV-0013603_3	NF033510.3	N/A	N/A	Ca2+-stabilized repeat-containing adhesin	N/A
COG	UHGV-0013603_3	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0013603_3	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_5	phrog_13879	255.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0013603_5	1226322.HMPREF1545_00061	491.0	0	N/A	N/A
structural_annotation	UHGV-0013603_5	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_6	phrog_1194	64.7	1.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0013603_6	1226322.HMPREF1545_00060	215.0	0	N/A	N/A
structural_annotation	UHGV-0013603_6	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_7	phrog_1535	112.1	5.5e-35	tail length tape measure protein	tail
UniRef90	UHGV-0013603_7	UniRef90_A0A810PX76	124.0	1.24e-25	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0013603_7	693746.OBV_18190	117.0	3.03e-24	domain protein	N/A
COG	UHGV-0013603_7	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013603_7	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_8	phrog_706	134.0	8.3e-40	N/A	unknown function
UniRef90	UHGV-0013603_8	UniRef90_UPI00164D7633	220.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0013603_8	693746.OBV_18170	204.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0013603_8	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0013603_8	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_9	phrog_11299	85.2	7.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0013603_9	693746.OBV_18160	193.0	0	N/A	N/A
structural_annotation	UHGV-0013603_9	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_10	phrog_3099	96.4	3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0013603_10	1226322.HMPREF1545_00056	254.0	0	N/A	N/A
structural_annotation	UHGV-0013603_10	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_11	phrog_3266	59.9	3.3e-17	tail completion	connector
UniRef90	UHGV-0013603_11	UniRef90_A0A2Z4QA01	120.0	1.38e-32	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0013603_11	1232443.BAIA02000078_gene24	187.0	0	N/A	N/A
structural_annotation	UHGV-0013603_11	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_12	phrog_556	75.3	7e-22	minor head protein	head and packaging
UniRef90	UHGV-0013603_12	UniRef90_A0A2U1BEM0	198.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0013603_12	1226322.HMPREF1545_00054	163.0	0	Minor capsid protein	N/A
Pfam	UHGV-0013603_12	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0013603_12	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_13	phrog_3366	95.3	5.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0013603_13	1226322.HMPREF1545_00053	135.0	8.45e-39	N/A	N/A
Pfam	UHGV-0013603_13	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0013603_13	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_14	phrog_541	105.8	2.3e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-0013603_14	642492.Clole_0822	62.8	0.000000000127	N/A	N/A
PHROG	UHGV-0013603_15	phrog_10	164.3	0	major head protein	head and packaging
UniRef90	UHGV-0013603_15	UniRef90_A0A2U1BEF2	502.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0013603_15	1226322.HMPREF1545_00050	478.0	0	Phage capsid family	N/A
Pfam	UHGV-0013603_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0013603_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0013603_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0013603_15	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_16	phrog_2303	56.4	4.1e-16	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0013603_16	1226322.HMPREF1545_00049	183.0	0	N/A	N/A
structural_annotation	UHGV-0013603_17	PF11607,MF_00436,NF011232,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_18	phrog_581	296.1	0	minor head protein	head and packaging
UniRef90	UHGV-0013603_18	UniRef90_A0A1C5N7V1	716.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0013603_18	1226322.HMPREF1545_00046	532.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0013603_18	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0013603_18	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-0013603_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013603_18	PF06152,PF15542,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_19	phrog_533	375.4	0	portal protein	head and packaging
UniRef90	UHGV-0013603_19	UniRef90_UPI0006C81717	662.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0013603_19	1226322.HMPREF1545_00044	605.0	0	N/A	N/A
Pfam	UHGV-0013603_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0013603_19	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0013603_20	K06909	383.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0013603_20	phrog_3717	157.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0013603_20	UniRef90_A0A2U1BEH4	729.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0013603_20	33035.JPJF01000106_gene3136	475.0	0	Terminase small subunit	N/A
Pfam	UHGV-0013603_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0013603_20	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0013603_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0013603_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0013603_20	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0013603_21	K07474	112.8	5.3e-33	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0013603_21	phrog_51	111.4	5.6e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0013603_21	UniRef90_A0A396NMY4	123.0	9.01e-34	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0013603_21	1235800.C819_00494	110.0	3.15e-29	Terminase small subunit	N/A
Pfam	UHGV-0013603_21	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0013603_21	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0013603_21	PF03592,COG3728	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013603_22	UniRef90_A0A3B9CD52	59.3	0.000000000814	S1-like domain-containing protein	N/A
structural_annotation	UHGV-0013603_22	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_23	phrog_7339	83.3	2.5e-24	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013603_23	UniRef90_A0A2V2GLL9	474.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0013603_23	1150474.JQJI01000006_gene784	93.6	4.26e-20	metallophosphoesterase	N/A
Pfam	UHGV-0013603_23	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0013603_23	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0013603_23	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013603_25	UniRef90_UPI001D0837DD	117.0	6.21e-31	N/A	N/A
structural_annotation	UHGV-0013603_25	PF07374,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013603_26	657322.FPR_23450	153.0	0	N/A	N/A
PHROG	UHGV-0013603_30	phrog_3878	40.8	0.000000000036	N/A	unknown function
structural_annotation	UHGV-0013603_30	PF18895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013603_32	TIGR04381	N/A	N/A	N/A	N/A
KOfam	UHGV-0013603_34	K01160	68.6	1.5e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0013603_34	phrog_34	67.2	2.5e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013603_34	UniRef90_A0A498CNH4	144.0	3.06044e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0013603_34	1567011.A0A0A7S133_9VIRU	52.0	0.000000728	Endodeoxyribonuclease RusA	N/A
structural_annotation	UHGV-0013603_34	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0013603_35	K00390	87.0	2.1e-25	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0013603_35	phrog_424	122.6	2.6e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0013603_35	UniRef90_UPI001D087498	380.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0013603_35	1408437.JNJN01000032_gene2312	341.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0013603_35	BrxP_00001	58.5	2.3e-17	BrxP	BREX
Pfam	UHGV-0013603_35	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0013603_35	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0013603_35	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_36	phrog_9804	164.3	0	N/A	unknown function
UniRef90	UHGV-0013603_36	UniRef90_UPI001E312ACC	363.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0013603_36	1121344.JHZO01000003_gene981	177.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0013603_36	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0013603_36	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_37	phrog_16304	90.0	2.7e-26	N/A	unknown function
UniRef90	UHGV-0013603_37	UniRef90_UPI001E560709	421.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013603_37	290402.Cbei_3733	62.8	0.00000000516	DnaD domain protein	N/A
Pfam	UHGV-0013603_37	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0013603_37	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0013603_37	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0013603_38	K03111	129.3	4.6e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0013603_38	phrog_44	131.9	4.4e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013603_38	UniRef90_UPI001E2A5A6F	231.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0013603_38	1235835.C814_01372	125.0	4.79e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0013603_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0013603_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0013603_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0013603_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0013603_38	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_39	phrog_757	181.8	0	DNA methyltransferase	other
UniRef90	UHGV-0013603_39	UniRef90_A0A3A6EPW1	267.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0013603_39	748224.HMPREF9436_03069	254.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0013603_39	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0013603_39	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_40	phrog_7566	52.4	0.0000000000000073	N/A	unknown function
eggNOG-mapper	UHGV-0013603_40	693746.OBV_24070	70.5	0.0000000000000403	N/A	N/A
PHROG	UHGV-0013603_41	phrog_72	64.9	1.2e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013603_41	UniRef90_UPI001F3F3E5C	146.0	1.70006e-41	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0013603_41	445972.ANACOL_01825	128.0	3.96e-35	N/A	N/A
structural_annotation	UHGV-0013603_41	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_42	phrog_14970	189.3	0	N/A	unknown function
UniRef90	UHGV-0013603_42	UniRef90_UPI00123F00F5	175.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0013603_42	642492.Clole_0944	150.0	3.45e-42	double-strand break repair protein	N/A
Pfam	UHGV-0013603_42	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0013603_42	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0013603_42	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_44	phrog_4433	301.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0013603_44	767434.Fraau_1460	122.0	4.21e-30	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0013603_44	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0013603_44	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013603_47	NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013603_49	UniRef90_A0A6L9H2N1	61.6	0.0000000000618	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0013603_49	1232446.BAIE02000002_gene796	51.2	0.000000132	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0013603_49	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0013603_49	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0013603_51	phrog_750	76.5	2.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0013603_51	742723.HMPREF9477_00931	77.8	3.57e-17	N/A	N/A
structural_annotation	UHGV-0013603_51	PF13835,NF040858	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013603_53	UniRef90_UPI001030EC9B	89.0	6.62e-22	toxin-antitoxin system, antitoxin component, Xre family protein	N/A
eggNOG-mapper	UHGV-0013603_53	887929.HMP0721_1290	68.9	0.0000000000000124	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0013603_53	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0013603_54	K22299	49.5	6.3e-26	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0013603_54	phrog_8	59.5	2.1e-30	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013603_54	UniRef90_UPI000837DF7D	103.0	8.01e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0013603_54	1122173.AXVL01000018_gene460	84.3	1.36e-17	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0013603_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0013603_54	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0013603_54	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0013603_55	UniRef90_UPI001C3C137B	340.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013603_55	1445613.JALM01000051_gene4092	73.2	0.00000000000142	N/A	N/A
Pfam	UHGV-0013603_55	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-0013603_55	TIGR00729,COG1039	N/A	N/A	N/A	N/A
KOfam	UHGV-0013603_56	K06400	342.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0013603_56	phrog_95	345.7	0	integrase	integration and excision
UniRef90	UHGV-0013603_56	UniRef90_A0A1M6M277	403.0	0	Site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-0013603_56	445972.ANACOL_03320	388.0	0	N/A	N/A
Pfam	UHGV-0013603_56	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0013603_56	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0013603_56	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0013603_56	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0013603_56	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A