UHGV-0013605 (vOTU-077042)

Viral Genome: UHGV-0013605

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0013605
vOTU ID	vOTU-077042
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_A_12_1112__NODE_1494_length_35089_cov_17.903290
Associated BioSample	SAMEA4765572
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.49 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9679
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.17
Jumbo phage	No

Genome content
Genome length (bp)	35,089
GC content	61.79%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	95%
Average CDS length (bps)	679.10
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0013605_1	411460.RUMTOR_01324	53.5	0.000000881	N/A	N/A
PHROG	UHGV-0013605_2	phrog_13589	208.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0013605_2	428125.CLOLEP_01434	243.0	0	N/A	N/A
structural_annotation	UHGV-0013605_4	PF12245	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_6	phrog_18725	44.8	0.000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0013605_6	585501.HMPREF6123_0822	73.9	0.00000000000000646	N/A	N/A
PHROG	UHGV-0013605_7	phrog_13879	202.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0013605_7	1304866.K413DRAFT_0774	128.0	8.6e-28	N/A	N/A
structural_annotation	UHGV-0013605_7	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_8	phrog_1194	65.3	7.8e-19	N/A	unknown function
Pfam	UHGV-0013605_8	PF20458	N/A	N/A	N/A	DUF6711
PHROG	UHGV-0013605_9	phrog_1535	93.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0013605_9	665956.HMPREF1032_03057	231.0	0	tape measure	N/A
COG	UHGV-0013605_9	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_10	phrog_706	83.4	2.6e-24	N/A	unknown function
UniRef90	UHGV-0013605_10	UniRef90_UPI0013141117	214.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0013605_10	665956.HMPREF1032_03058	238.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0013605_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0013605_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_11	phrog_11299	75.3	8.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0013605_11	665956.HMPREF1032_03059	116.0	2.18e-31	N/A	N/A
structural_annotation	UHGV-0013605_11	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_12	phrog_3099	59.0	9.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0013605_12	665956.HMPREF1032_03060	262.0	0	N/A	N/A
structural_annotation	UHGV-0013605_12	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_13	phrog_3266	84.3	1.1e-24	tail completion	connector
eggNOG-mapper	UHGV-0013605_13	718252.FP2_06620	55.8	0.0000000798	N/A	N/A
structural_annotation	UHGV-0013605_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_14	phrog_556	90.2	1.5e-26	minor head protein	head and packaging
UniRef90	UHGV-0013605_14	UniRef90_UPI001958E7C1	180.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0013605_14	665956.HMPREF1032_03062	166.0	0	Minor capsid protein	N/A
Pfam	UHGV-0013605_14	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0013605_14	PF11114	N/A	N/A	N/A	N/A
Pfam	UHGV-0013605_15	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0013605_15	PF20536,COG1853	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_16	phrog_541	43.5	0.0000000000048	head-tail adaptor	connector
PHROG	UHGV-0013605_17	phrog_267	113.3	2.2e-33	major head protein	head and packaging
UniRef90	UHGV-0013605_17	UniRef90_A0A4P8IA69	380.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-0013605_17	748224.HMPREF9436_03335	448.0	0	N/A	N/A
structural_annotation	UHGV-0013605_17	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_18	phrog_194	74.3	2.1e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-0013605_18	UniRef90_D4K444	171.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0013605_18	748224.HMPREF9436_03336	176.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0013605_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0013605_18	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_19	phrog_478	123.7	7.9e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0013605_19	UniRef90_A0A373Q857	166.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0013605_19	1111121.HMPREF1247_0834	94.7	3.17e-23	N/A	N/A
PHROG	UHGV-0013605_21	phrog_581	253.0	0	minor head protein	head and packaging
UniRef90	UHGV-0013605_21	UniRef90_UPI001CBDED93	425.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0013605_21	665956.HMPREF1032_03615	217.0	0	cell adhesion	N/A
Pfam	UHGV-0013605_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0013605_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013605_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_22	phrog_533	258.6	0	portal protein	head and packaging
UniRef90	UHGV-0013605_22	UniRef90_A0A7G9WF85	434.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0013605_22	718252.FP2_06700	476.0	0	N/A	N/A
structural_annotation	UHGV-0013605_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0013605_23	K06909	78.1	1.2e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0013605_23	phrog_2	108.2	1.2e-31	terminase large subunit	head and packaging
UniRef90	UHGV-0013605_23	UniRef90_UPI0019684892	669.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0013605_23	1449050.JNLE01000003_gene3895	354.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0013605_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0013605_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0013605_23	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_24	phrog_2412	83.7	2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0013605_24	742738.HMPREF9460_02504	130.0	1.92e-37	N/A	N/A
PHROG	UHGV-0013605_25	phrog_36	86.9	2.3e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013605_25	UniRef90_UPI00195B715F	112.0	6.55e-29	N/A	N/A
eggNOG-mapper	UHGV-0013605_25	1235799.C818_04213	57.4	0.0000000254	sigma factor activity	N/A
Pfam	UHGV-0013605_25	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0013605_25	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0013605_25	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0013605_26	K01160	59.9	6.7e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0013605_26	phrog_140	110.8	1e-32	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013605_26	UniRef90_A0A6G3M4Z7	186.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0013605_26	742738.HMPREF9460_01358	187.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0013605_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0013605_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0013605_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0013605_27	K07505	370.6	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0013605_27	phrog_2597	1073.3	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013605_27	UniRef90_A0A2A7AI73	1025.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0013605_27	552396.HMPREF0863_02435	846.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0013605_27	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0013605_27	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0013605_27	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0013605_27	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0013605_28	K17677	360.4	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0013605_28	phrog_16	274.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013605_28	UniRef90_A0A1Y4TGU2	719.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0013605_28	645991.Sgly_0323	676.0	0	type III restriction enzyme, res subunit	N/A
PADLOC	UHGV-0013605_28	mREase_IV_00005	141.9	4.99983e-42	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0013605_28	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0013605_28	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0013605_28	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0013605_28	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_29	phrog_2698	183.4	0	N/A	unknown function
UniRef90	UHGV-0013605_29	UniRef90_A0A1Y4IUZ5	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013605_29	1262914.BN533_01948	155.0	0	N/A	N/A
structural_annotation	UHGV-0013605_29	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_30	phrog_124	218.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013605_30	UniRef90_UPI001C011C46	390.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0013605_30	610130.Closa_1367	367.0	0	AAA domain	N/A
Pfam	UHGV-0013605_30	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0013605_30	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0013605_31	K03546	71.8	8.5e-21	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0013605_31	phrog_1499	454.1	0	N/A	unknown function
UniRef90	UHGV-0013605_31	UniRef90_UPI00189C91C8	490.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0013605_31	394503.Ccel_3310	473.0	0	domain protein	N/A
Pfam	UHGV-0013605_31	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0013605_31	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0013605_31	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_32	phrog_1733	61.5	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0013605_32	665956.HMPREF1032_03597	207.0	0	DNA binding	N/A
COG	UHGV-0013605_32	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
Pfam	UHGV-0013605_34	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0013605_37	PF11034	N/A	N/A	N/A	N/A
Pfam	UHGV-0013605_38	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
eggNOG-mapper	UHGV-0013605_41	1235802.C823_04730	49.7	0.000000641	N/A	N/A
UniRef90	UHGV-0013605_42	UniRef90_UPI001C031E88	121.0	1.01e-34	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0013605_42	445972.ANACOL_01800	63.2	0.00000000000193	N/A	N/A
Pfam	UHGV-0013605_42	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0013605_42	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0013605_42	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0013605_43	K01356	155.7	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0013605_43	phrog_4	117.7	1.1e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-0013605_43	UniRef90_UPI001C021C25	283.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0013605_43	411473.RUMCAL_03095	170.0	0	N/A	N/A
Pfam	UHGV-0013605_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0013605_43	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0013605_43	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0013605_43	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013605_44	UniRef90_UPI0019244A5A	73.2	0.0000000000000439	type II toxin-antitoxin system RelE/ParE family toxin	N/A
structural_annotation	UHGV-0013605_44	PF05973,TIGR02683,COG3657	N/A	N/A	N/A	N/A
KOfam	UHGV-0013605_45	K15773	50.6	0.000000000000039	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0013605_45	phrog_1373	46.0	0.00000000000076	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013605_45	UniRef90_A0A410PSN0	74.7	0.00000000000000968	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0013605_45	1410622.JNKY01000015_gene360	71.2	0.0000000000000408	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0013605_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013605_45	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0013605_46	PF02556,MF_00821,NF004392,COG1952	N/A	N/A	N/A	N/A
KOfam	UHGV-0013605_47	K14059	215.0	0	int; integrase	N/A
PHROG	UHGV-0013605_47	phrog_1	201.2	0	integrase	integration and excision
UniRef90	UHGV-0013605_47	UniRef90_UPI00195B6EEA	368.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0013605_47	643648.Slip_1975	192.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0013605_47	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0013605_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0013605_47	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0013605_47	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_48	phrog_1129	71.7	6.5e-21	holin	lysis
UniRef90	UHGV-0013605_48	UniRef90_UPI001F43F0BF	129.0	2.14e-37	phage holin family protein	N/A
eggNOG-mapper	UHGV-0013605_48	1256908.HMPREF0373_00463	120.0	9.1e-35	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0013605_48	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0013605_48	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0013605_49	phrog_1863	65.4	5.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0013605_49	748224.HMPREF9436_01412	108.0	2.08e-30	N/A	N/A