UHGV-0013936 (vOTU-156537)

Viral Genome: UHGV-0013936

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0013936
vOTU ID	vOTU-156537
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_I_16_1564__NODE_1109_length_42410_cov_12.446578_1
Associated BioSample	SAMEA4765854
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.6 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.81
Jumbo phage	No

Genome content
Genome length (bp)	35,886
GC content	46.96%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	98%
Average CDS length (bps)	780.87
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.6)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0013936_1	phrog_355	59.5	5e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013936_1	UniRef90_A0A3E3I255	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013936_1	97138.C820_00250	131.0	1.61e-38	N/A	N/A
Pfam	UHGV-0013936_1	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0013936_1	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0013936_2	phrog_263	84.7	6.2e-25	holin	lysis
UniRef90	UHGV-0013936_2	UniRef90_UPI0015A56FE5	100.0	1.29e-25	phage holin	N/A
eggNOG-mapper	UHGV-0013936_2	1179226.AJXO01000005_gene1879	69.7	0.0000000000000231	SPP1 phage holin	N/A
Pfam	UHGV-0013936_2	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0013936_2	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0013936_2	PF04688	N/A	N/A	N/A	N/A
KOfam	UHGV-0013936_4	K19304	151.0	1.12104e-44	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0013936_4	phrog_22978	530.0	0	N/A	unknown function
UniRef90	UHGV-0013936_4	UniRef90_UPI001CF7F562	1568.0	0	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0013936_4	1410633.JHWR01000012_gene87	147.0	2.04e-33	Peptidase family M23	N/A
Pfam	UHGV-0013936_4	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
Pfam	UHGV-0013936_4	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0013936_4	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0013936_4	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
PHROG	UHGV-0013936_5	phrog_21397	47.5	0.00000000000023	N/A	unknown function
UniRef90	UHGV-0013936_5	UniRef90_A0A1V5S4F9	112.0	2.49e-25	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0013936_5	1203606.HMPREF1526_02741	82.8	0.0000000000000014	N/A	N/A
PHROG	UHGV-0013936_6	phrog_2310	50.1	0.000000000000027	N/A	unknown function
PHROG	UHGV-0013936_10	phrog_24267	89.7	3.4e-26	N/A	unknown function
UniRef90	UHGV-0013936_10	UniRef90_UPI000C07ED94	100.0	4.09e-21	N/A	N/A
eggNOG-mapper	UHGV-0013936_10	1123302.KB904167_gene530	107.0	1.59e-23	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0013936_10	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0013936_10	PF14545,MF_04106	N/A	N/A	N/A	N/A
PHROG	UHGV-0013936_11	phrog_511	226.7	0	internal virion protein	head and packaging
UniRef90	UHGV-0013936_11	UniRef90_A0A8D9UH72	278.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0013936_11	1226322.HMPREF1545_00785	288.0	0	N/A	N/A
structural_annotation	UHGV-0013936_11	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0013936_12	phrog_12105	69.4	4.9e-20	N/A	unknown function
UniRef90	UHGV-0013936_14	UniRef90_UPI001CF901D5	280.0	0	phage baseplate upper protein	N/A
Pfam	UHGV-0013936_14	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
structural_annotation	UHGV-0013936_14	PF20942,TIGR03503,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0013936_15	phrog_15239	92.8	1.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0013936_15	1507.HMPREF0262_03462	57.0	0.00000000593	N/A	N/A
PHROG	UHGV-0013936_16	phrog_1357	287.4	0	major head protein	head and packaging
UniRef90	UHGV-0013936_16	UniRef90_UPI000B8B3F29	379.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0013936_16	1449126.JQKL01000003_gene1695	329.0	0	N/A	N/A
Pfam	UHGV-0013936_16	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0013936_16	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0013936_16	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0013936_17	phrog_13908	224.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0013936_17	1410650.JHWL01000003_gene2831	101.0	3.83e-22	N/A	N/A
PHROG	UHGV-0013936_19	phrog_156	314.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0013936_19	748224.HMPREF9436_01396	478.0	0	N/A	N/A
structural_annotation	UHGV-0013936_19	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0013936_20	K06909	129.8	2.6e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0013936_20	phrog_979	132.4	7.50003e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0013936_20	UniRef90_UPI001CF909A5	609.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0013936_20	1410650.JHWL01000003_gene2834	559.0	0	N/A	N/A
Pfam	UHGV-0013936_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0013936_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0013936_20	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
COG	UHGV-0013936_21	COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0013936_22	K03111	142.0	6.30024e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0013936_22	phrog_44	140.5	9.99967e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013936_22	UniRef90_A0A1C5T9Y0	184.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0013936_22	888727.HMPREF9092_0557	167.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0013936_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0013936_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0013936_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0013936_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0013936_22	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0013936_23	phrog_18716	156.0	0	N/A	unknown function
UniRef90	UHGV-0013936_23	UniRef90_A0A1C5TA90	315.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013936_23	1029718.SFBM_0379	141.0	2.59001e-40	N/A	N/A
Pfam	UHGV-0013936_23	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0013936_23	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-0013936_26	phrog_15198	40.1	0.000000000041	N/A	unknown function
UniRef90	UHGV-0013936_26	UniRef90_UPI001D064D4E	115.0	2.53e-30	N/A	N/A
KOfam	UHGV-0013936_27	K07319	119.1	3.5e-35	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0013936_27	phrog_23224	203.2	0	DNA methyltransferase	other
UniRef90	UHGV-0013936_27	UniRef90_R6E0P3	357.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0013936_27	888049.HMPREF8578_0680	342.0	0	DNA methylase	N/A
PADLOC	UHGV-0013936_27	MTase_II_00172	113.2	4.6e-35	Type II methyltransferase	RM
Pfam	UHGV-0013936_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0013936_27	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0013936_27	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0013936_30	phrog_190	98.5	6.3e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013936_30	UniRef90_UPI000B4059BB	96.7	3.71e-22	N/A	N/A
eggNOG-mapper	UHGV-0013936_30	1035196.HMPREF9998_01736	96.7	1.62e-23	N/A	N/A
Pfam	UHGV-0013936_30	PF06356	N/A	N/A	N/A	DUF1064
PHROG	UHGV-0013936_34	phrog_9804	131.6	5.5e-39	N/A	unknown function
UniRef90	UHGV-0013936_34	UniRef90_A0A1C5T9U7	244.0	0	Loader and inhibitor of phage G40P	N/A
eggNOG-mapper	UHGV-0013936_34	585394.RHOM_14005	125.0	7.55e-34	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-0013936_34	cluster_137185	120.0	6.99e-37	NA	N/A
Pfam	UHGV-0013936_34	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0013936_34	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0013936_35	phrog_2514	94.7	9.1e-28	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013936_35	UniRef90_UPI001C1E0E19	124.0	1.9e-31	GntR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0013936_35	886379.AEWI01000001_gene1766	149.0	8.58996e-42	N/A	N/A
Pfam	UHGV-0013936_35	PF08279	N/A	N/A	HTH domain	HTH_11
structural_annotation	UHGV-0013936_35	PF09681,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0013936_36	K07455	299.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0013936_36	phrog_148	278.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013936_36	UniRef90_UPI0019575C80	301.0	0	recombination protein RecT	N/A
eggNOG-mapper	UHGV-0013936_36	428125.CLOLEP_01822	294.0	0	RecT family	N/A
Pfam	UHGV-0013936_36	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0013936_36	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0013936_36	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0013936_36	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013936_37	397288.C806_01483	53.1	0.0000000145	N/A	N/A
PHROG	UHGV-0013936_38	phrog_434	321.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013936_38	UniRef90_A0A7C6PS99	274.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0013936_38	1121947.AUHK01000002_gene916	258.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0013936_38	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0013936_38	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0013936_38	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0013936_38	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0013936_42	phrog_1123	56.0	5.7e-16	N/A	unknown function
UniRef90	UHGV-0013936_42	UniRef90_A0A858BT04	81.6	1.78e-18	DNA gyrase	N/A
eggNOG-mapper	UHGV-0013936_42	411483.FAEPRAA2165_01885	53.9	0.0000000292	N/A	N/A
structural_annotation	UHGV-0013936_42	PF03551,TIGR02719,COG1695	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013936_44	UniRef90_A0A1C5T7T8	98.2	1.77e-25	DNA binding domain, excisionase family	N/A
Pfam	UHGV-0013936_44	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0013936_44	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0013936_44	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0013936_45	phrog_7964	215.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0013936_45	1232443.BAIA02000066_gene981	100.0	5.01e-24	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0013936_45	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0013936_45	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A