UHGV-0014038 (vOTU-003310)

Viral Genome: UHGV-0014038

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0014038
vOTU ID	vOTU-003310
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_C_6_1128__k127_187853__flag_3__multi_202.0000__len_44466
Associated BioSample	SAMEA4765588
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.34
Jumbo phage	No

Genome content
Genome length (bp)	44,339
GC content	63.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	93%
Average CDS length (bps)	747.60
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0014038_1	K06909	136.5	2.2e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0014038_1	phrog_979	128.7	5.9e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0014038_1	UniRef90_A0A3C0NMI6	599.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0014038_1	1410650.JHWL01000003_gene2834	558.0	0	N/A	N/A
Pfam	UHGV-0014038_1	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0014038_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0014038_1	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0014038_2	phrog_17214	50.1	0.000000000000056	endolysin	lysis
UniRef90	UHGV-0014038_2	UniRef90_A0A1V5RXD7	174.0	0	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0014038_2	1410650.JHWL01000003_gene2815	130.0	1.74e-30	N/A	N/A
Pfam	UHGV-0014038_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0014038_2	PF01471,TIGR02869,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0014038_3	phrog_22978	498.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0014038_3	1410650.JHWL01000003_gene2814	345.0	0	N/A	N/A
Pfam	UHGV-0014038_3	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
KOfam	UHGV-0014038_4	K24213	51.1	0.000000000000013	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0014038_4	phrog_5073	68.4	7.2e-20	tail fiber protein	tail
Pfam	UHGV-0014038_4	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0014038_4	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0014038_6	K01447	80.0	3.5e-23	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0014038_6	phrog_1794	147.2	1.30321e-43	amidase	lysis
UniRef90	UHGV-0014038_6	UniRef90_A0A3N0I5S2	171.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0014038_6	411468.CLOSCI_00531	159.0	8.07008e-42	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0014038_6	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0014038_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0014038_6	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0014038_6	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0014038_6	PF01510,PF18342,MF_04111,NF008758,NF040670,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0014038_7	phrog_4105	41.4	0.000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0014038_7	1120998.AUFC01000030_gene2251	51.2	0.000000795	N/A	N/A
PHROG	UHGV-0014038_8	phrog_1129	67.7	1.2e-19	holin	lysis
UniRef90	UHGV-0014038_8	UniRef90_A0A316PMB0	117.0	1.29e-32	Enolase	N/A
eggNOG-mapper	UHGV-0014038_8	665956.HMPREF1032_03272	117.0	2.17e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0014038_8	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0014038_8	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0014038_12	1378168.N510_03079	87.4	6.68e-19	N/A	N/A
KOfam	UHGV-0014038_13	K14059	152.0	5.60519e-45	int; integrase	N/A
PHROG	UHGV-0014038_13	phrog_1	155.4	0	integrase	integration and excision
UniRef90	UHGV-0014038_13	UniRef90_A0A2Z4QB94	269.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0014038_13	1423724.BAMM01000034_gene2135	77.8	0.000000000000469	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0014038_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0014038_13	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0014038_13	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014038_14	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0014038_15	phrog_14556	44.3	0.0000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0014038_15	477974.Daud_0706	72.0	0.0000000000019	PFAM copper amine oxidase domain protein	N/A
COG	UHGV-0014038_15	COG0103	N/A	N/A	Ribosomal protein S9	N/A
PHROG	UHGV-0014038_16	phrog_8	68.0	2.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0014038_16	UniRef90_UPI001E54DE4F	80.5	2.53e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0014038_16	1378168.N510_01712	80.5	9.73e-16	N/A	N/A
Pfam	UHGV-0014038_16	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0014038_18	PF13601,TIGR04176	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014038_19	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
Pfam	UHGV-0014038_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0014038_24	phrog_7838	134.6	8e-40	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014038_24	UniRef90_A0A8D9UGW3	194.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0014038_24	742767.HMPREF9456_02052	168.0	0	N/A	N/A
structural_annotation	UHGV-0014038_24	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0014038_25	phrog_72	56.6	2.6e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014038_25	UniRef90_A0A8D9PDS2	148.0	5.57997e-42	NinB protein	N/A
eggNOG-mapper	UHGV-0014038_25	445972.ANACOL_01825	150.0	1.06499e-43	N/A	N/A
structural_annotation	UHGV-0014038_25	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0014038_26	phrog_7370	53.5	0.0000000000000036	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014038_26	UniRef90_A0A3D1LDS4	114.0	4.02e-31	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0014038_26	445972.ANACOL_01826	100.0	1.47e-26	HNH nucleases	N/A
KOfam	UHGV-0014038_27	K03111	122.7	4.7e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0014038_27	phrog_44	124.1	1e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014038_27	UniRef90_A0A810QFR8	167.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0014038_27	1007096.BAGW01000007_gene1922	160.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0014038_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0014038_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0014038_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0014038_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0014038_27	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0014038_29	phrog_16304	44.3	0.0000000000024	N/A	unknown function
UniRef90	UHGV-0014038_29	UniRef90_UPI001E36D421	117.0	7.54e-29	N/A	N/A
eggNOG-mapper	UHGV-0014038_29	1139219.I569_00067	94.7	2.35e-20	DnaD domain protein	N/A
Pfam	UHGV-0014038_29	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0014038_29	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0014038_29	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0014038_33	phrog_190	87.3	1.6e-25	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014038_33	UniRef90_UPI001C82C15D	97.1	9.56e-24	N/A	N/A
eggNOG-mapper	UHGV-0014038_33	342113.DM82_1124	88.2	3.02e-20	N/A	N/A
Pfam	UHGV-0014038_33	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0014038_33	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0014038_35	K00390	40.7	7e-23	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0014038_35	phrog_424	93.8	1.4e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0014038_35	UniRef90_A0A7C4YDR6	584.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0014038_35	1235800.C819_02256	522.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0014038_35	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0014038_35	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0014038_35	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0014038_36	K00558	222.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0014038_36	phrog_116	259.5	0	DNA methyltransferase	other
UniRef90	UHGV-0014038_36	UniRef90_H1CIV2	610.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0014038_36	1121334.KB911073_gene1852	508.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0014038_36	MTase_II_00164	94.5	4.6e-33	Type II methyltransferase	RM
Pfam	UHGV-0014038_36	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0014038_36	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0014038_36	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0014038_41	445972.ANACOL_01862	58.9	0.000000000859	Phage antirepressor protein KilAC domain	N/A
COG	UHGV-0014038_41	COG3617	N/A	N/A	Prophage antirepressor	N/A
PHROG	UHGV-0014038_43	phrog_156	308.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0014038_43	1410650.JHWL01000003_gene2833	521.0	0	N/A	N/A
structural_annotation	UHGV-0014038_43	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0014038_44	K07584	51.3	0.000000000000023	N/A	N/A
PHROG	UHGV-0014038_44	phrog_4478	53.1	0.0000000000000032	peptidase	other
UniRef90	UHGV-0014038_44	UniRef90_A0A7Y3P0U9	54.7	0.000000234	Ribosomal-processing cysteine protease Prp	N/A
Pfam	UHGV-0014038_44	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0014038_44	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014038_44	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0014038_45	phrog_13908	171.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0014038_45	1410650.JHWL01000003_gene2831	94.7	2.09e-19	N/A	N/A
PHROG	UHGV-0014038_46	phrog_1357	204.4	0	major head protein	head and packaging
UniRef90	UHGV-0014038_46	UniRef90_A0A2V2CFL5	556.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0014038_46	1410650.JHWL01000003_gene2830	260.0	0	N/A	N/A
NCBIFam	UHGV-0014038_46	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0014038_46	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0014038_48	phrog_12105	127.1	7.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0014038_48	1519439.JPJG01000060_gene1891	82.0	2.26e-18	N/A	N/A
PHROG	UHGV-0014038_49	phrog_511	209.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0014038_49	1410650.JHWL01000003_gene2827	305.0	0	N/A	N/A
structural_annotation	UHGV-0014038_49	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014038_50	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0014038_51	phrog_372	225.0	0	tail protein	tail
UniRef90	UHGV-0014038_51	UniRef90_A0A3E3E6C0	168.0	2.23003e-41	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0014038_51	1235799.C818_01005	132.0	1.17e-29	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0014038_51	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0014038_51	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0014038_51	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
KOfam	UHGV-0014038_53	K07726	40.2	0.000000000057	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0014038_53	phrog_25567	51.8	0.000000000000011	N/A	unknown function
UniRef90	UHGV-0014038_53	UniRef90_UPI00164AED9E	112.0	4.81e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0014038_53	1410631.JHWZ01000002_gene1263	50.1	0.00000161	sequence-specific DNA binding	N/A
Pfam	UHGV-0014038_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0014038_53	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0014038_53	NF040522,COG2944	N/A	N/A	N/A	N/A