UHGV-0014073 (vOTU-013684)

Viral Genome: UHGV-0014073

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0014073
vOTU ID	vOTU-013684
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_D_19_1578__NODE_2315_length_38673_cov_6.762722
Associated BioSample	SAMEA4765863
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9721
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.24
Jumbo phage	No

Genome content
Genome length (bp)	38,673
GC content	31.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	90%
Average CDS length (bps)	533.26
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0014073_1	1504823.CCMM01000008_gene1022	67.8	0.0000000000000549	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0014073_1	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
COG	UHGV-0014073_1	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0014073_3	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014073_6	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_7	phrog_2566	47.8	0.00000000000019	N/A	unknown function
PHROG	UHGV-0014073_8	phrog_6616	40.9	0.000000000013	tail protein	tail
UniRef90	UHGV-0014073_8	UniRef90_UPI0018A8DAE7	356.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0014073_8	469596.HMPREF9488_01330	299.0	0	N/A	N/A
structural_annotation	UHGV-0014073_8	NF033848,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_9	phrog_1194	57.7	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0014073_9	1123263.AUKY01000051_gene1070	66.6	0.000000000000975	N/A	N/A
PHROG	UHGV-0014073_10	phrog_1535	285.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0014073_10	UniRef90_A0A4R3TDI6	292.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0014073_10	552396.HMPREF0863_01644	249.0	0	phage tail tape measure protein	N/A
COG	UHGV-0014073_10	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_11	phrog_8355	90.3	8.8e-27	N/A	unknown function
UniRef90	UHGV-0014073_11	UniRef90_UPI001D0AB44C	178.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0014073_11	552396.HMPREF0863_01643	94.4	3.64e-24	N/A	N/A
Pfam	UHGV-0014073_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
PHROG	UHGV-0014073_12	phrog_8300	86.4	2.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0014073_12	1232449.BAHV02000018_gene1519	107.0	1.13e-28	N/A	N/A
structural_annotation	UHGV-0014073_12	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_13	phrog_820	115.4	3.5e-34	major tail protein	tail
eggNOG-mapper	UHGV-0014073_13	552396.HMPREF0863_01641	186.0	0	domain, Protein	N/A
COG	UHGV-0014073_13	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_14	phrog_2595	101.2	7.4e-30	head-tail connector protein	connector
UniRef90	UHGV-0014073_14	UniRef90_UPI001D0A149F	263.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0014073_14	552396.HMPREF0863_01640	199.0	0	N/A	N/A
Pfam	UHGV-0014073_14	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0014073_14	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_15	phrog_556	54.1	0.0000000000000024	minor head protein	head and packaging
UniRef90	UHGV-0014073_15	UniRef90_UPI001D0A635A	219.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0014073_15	552396.HMPREF0863_01639	160.0	0	N/A	N/A
PHROG	UHGV-0014073_16	phrog_8710	100.8	8.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0014073_16	552396.HMPREF0863_01638	105.0	6.64e-28	N/A	N/A
structural_annotation	UHGV-0014073_16	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_17	phrog_541	89.1	3.9e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0014073_17	1280692.AUJL01000027_gene2158	118.0	8.71e-33	N/A	N/A
PHROG	UHGV-0014073_18	phrog_1378	60.3	2.9e-17	N/A	unknown function
PHROG	UHGV-0014073_19	phrog_422	302.9	0	major head protein	head and packaging
UniRef90	UHGV-0014073_19	UniRef90_UPI0009340F4E	419.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0014073_19	1232449.BAHV02000018_gene1525	397.0	0	N/A	N/A
structural_annotation	UHGV-0014073_19	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_21	phrog_30609	50.0	0.000000000000064	N/A	unknown function
structural_annotation	UHGV-0014073_21	PF21485	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_22	phrog_27009	40.0	0.00000000007	N/A	unknown function
eggNOG-mapper	UHGV-0014073_22	903814.ELI_3212	51.2	0.0000000544	N/A	N/A
PHROG	UHGV-0014073_23	phrog_581	299.9	0	minor head protein	head and packaging
UniRef90	UHGV-0014073_23	UniRef90_UPI001D0B0D83	961.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0014073_23	552396.HMPREF0863_01630	425.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0014073_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0014073_23	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_24	phrog_533	206.7	0	portal protein	head and packaging
UniRef90	UHGV-0014073_24	UniRef90_UPI001D09B198	908.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0014073_24	1232449.BAHV02000018_gene1530	581.0	0	N/A	N/A
structural_annotation	UHGV-0014073_24	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0014073_25	K06909	101.2	1.3e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0014073_25	phrog_2	59.6	6.7e-17	terminase large subunit	head and packaging
UniRef90	UHGV-0014073_25	UniRef90_UPI000E50F161	935.0	0	terminase	N/A
eggNOG-mapper	UHGV-0014073_25	1232449.BAHV02000018_gene1531	728.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0014073_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0014073_25	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0014073_26	K07474	71.7	2.2e-20	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0014073_26	phrog_51	90.0	2.9e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0014073_26	UniRef90_UPI001D0BD6AB	266.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0014073_26	1504823.CCMM01000008_gene1049	139.0	1.35e-40	DNA packaging	N/A
Pfam	UHGV-0014073_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0014073_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0014073_28	phrog_12650	72.6	2.7e-21	N/A	unknown function
structural_annotation	UHGV-0014073_28	NF010673	N/A	N/A	N/A	N/A
KOfam	UHGV-0014073_29	K07171	72.0	1.1e-20	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0014073_29	phrog_1936	70.3	2.6e-20	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0014073_29	UniRef90_UPI0013D66876	60.1	0.00000000428	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0014073_29	1235799.C818_02873	56.6	0.0000000159	Toxic component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0014073_29	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0014073_29	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0014073_29	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014073_30	PF17020,NF005100	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_31	phrog_954	255.1	0	DNA methyltransferase	other
UniRef90	UHGV-0014073_31	UniRef90_A0A416FW19	301.0	0	Class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0014073_31	1321779.HMPREF1984_00119	267.0	0	methyltransferase	N/A
PADLOC	UHGV-0014073_31	MTase_II_00074	249.1	0	Type II methyltransferase	RM
Pfam	UHGV-0014073_31	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0014073_31	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0014073_31	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0014073_32	428127.EUBDOL_01238	58.9	0.000000000589	N/A	N/A
PHROG	UHGV-0014073_33	phrog_13561	56.7	2.6e-16	N/A	unknown function
KOfam	UHGV-0014073_38	K24451	111.6	6.6e-33	zim; modification methylase	N/A
PHROG	UHGV-0014073_38	phrog_67	94.6	3.1e-28	DNA methyltransferase	other
UniRef90	UHGV-0014073_38	UniRef90_A0A1Q6MQH0	585.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0014073_38	1227266.HMPREF1551_00550	240.0	0	DNA methylase	N/A
PADLOC	UHGV-0014073_38	MTase_II_00139	93.3	4.1e-27	Type II methyltransferase	RM
Pfam	UHGV-0014073_38	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0014073_38	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0014073_38	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0014073_39	K14440	48.2	2.8e-26	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0014073_39	phrog_62	191.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014073_39	UniRef90_A0A416FW76	820.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0014073_39	1280692.AUJL01000044_gene2346	376.0	0	SNF2 family N-terminal domain	N/A
Pfam	UHGV-0014073_39	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0014073_39	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0014073_39	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0014073_39	PF18766,PF16203,MF_01821,TIGR04095,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_40	phrog_8470	148.0	4.90454e-44	N/A	unknown function
UniRef90	UHGV-0014073_40	UniRef90_A0A849YCV8	598.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0014073_40	1232449.BAHV02000018_gene1540	97.4	7.94e-19	PcfJ-like protein	N/A
Pfam	UHGV-0014073_40	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0014073_40	PF14284	N/A	N/A	N/A	N/A
Pfam	UHGV-0014073_41	PF14058	N/A	N/A	PcfK-like protein	PcfK
PHROG	UHGV-0014073_42	phrog_4433	79.6	3.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0014073_42	1120792.JAFV01000001_gene573	79.0	0.00000000000000181	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0014073_42	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0014073_43	PF17660	N/A	N/A	N/A	N/A
KOfam	UHGV-0014073_46	K04763	161.5	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0014073_46	phrog_1	143.7	1.60028e-42	integrase	integration and excision
UniRef90	UHGV-0014073_46	UniRef90_UPI001D0B91A2	515.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0014073_46	908340.HMPREF9406_2589	161.0	5.60519e-45	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0014073_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0014073_46	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0014073_46	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_47	phrog_3584	255.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014073_47	UniRef90_A0A4P8IFK4	203.0	0	N/A	N/A
eggNOG-mapper	UHGV-0014073_47	1321814.HMPREF9089_00921	265.0	0	N/A	N/A
structural_annotation	UHGV-0014073_47	PF21578	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014073_51	UniRef90_A0A415XFB8	82.8	1.57e-18	DNA-binding protein	N/A
structural_annotation	UHGV-0014073_56	PF20385	N/A	N/A	N/A	N/A
PHROG	UHGV-0014073_58	phrog_3240	102.5	2.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0014073_58	1158607.UAU_01711	98.2	5.62e-26	N/A	N/A
KOfam	UHGV-0014073_61	K18830	62.0	1.3e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0014073_61	phrog_8	51.3	0.0000000000000074	transcriptional regulator	transcription regulation
UniRef90	UHGV-0014073_61	UniRef90_A0A849YCT6	199.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0014073_61	1151292.QEW_0314	78.6	1.39e-16	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0014073_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0014073_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0014073_61	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0014073_62	K18830	67.1	1.6e-36	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0014073_62	phrog_8	107.8	7.3e-32	transcriptional regulator	transcription regulation
UniRef90	UHGV-0014073_62	UniRef90_A0A1C6BHJ6	312.0	0	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-0014073_62	665956.HMPREF1032_00149	123.0	1.43e-32	N/A	N/A
Pfam	UHGV-0014073_62	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0014073_62	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0014073_62	PF01381,PF13560,MF_00535,NF007257,NF040507,COG1476,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0014073_63	K14059	104.0	2.2e-30	int; integrase	N/A
PHROG	UHGV-0014073_63	phrog_1	121.9	6.9e-36	integrase	integration and excision
UniRef90	UHGV-0014073_63	UniRef90_A0A416DTM9	612.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0014073_63	1504823.CCMM01000008_gene1083	577.0	0	DNA integration	N/A
Pfam	UHGV-0014073_63	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
COG	UHGV-0014073_63	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0014073_63	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0014073_64	1504823.CCMM01000005_gene198	56.2	0.0000000258	double-stranded DNA endodeoxyribonuclease activity	N/A
COG	UHGV-0014073_64	COG5464	N/A	N/A	Recombination-promoting DNA endonuclease RpnC/YadD	N/A
eggNOG-mapper	UHGV-0014073_65	1504823.CCMM01000007_gene625	64.3	0.0000000000618	double-stranded DNA endodeoxyribonuclease activity	N/A
COG	UHGV-0014073_65	COG5464	N/A	N/A	Recombination-promoting DNA endonuclease RpnC/YadD	N/A