UHGV-0014672 (vOTU-042727)

Viral Genome: UHGV-0014672

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0014672
vOTU ID	vOTU-042727
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_B_3_1599__NODE_1351_length_40284_cov_8.894869
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-1.07
Jumbo phage	No

Genome content
Genome length (bp)	40,207
GC content	52.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	86%
Average CDS length (bps)	578.75
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0014672_1	K14059	97.6	2e-28	int; integrase	N/A
PHROG	UHGV-0014672_1	phrog_1	93.3	3.4e-27	integrase	integration and excision
UniRef90	UHGV-0014672_1	UniRef90_R6RH38	227.0	0	Prophage LambdaCh01 site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-0014672_1	411468.CLOSCI_00325	204.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0014672_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0014672_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0014672_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014672_2	UniRef90_A0A3C1K3F5	67.4	0.00000000000405	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0014672_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0014672_2	NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0014672_7	K22300	52.2	0.000000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0014672_7	phrog_7241	43.4	0.0000000000056	transcriptional regulator	transcription regulation
UniRef90	UHGV-0014672_7	UniRef90_A0A1S2GHY7	54.3	0.0000000499	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0014672_7	1125712.HMPREF1316_2427	53.5	0.000000286	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0014672_7	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0014672_7	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0014672_8	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0014672_11	K18830	40.6	0.000000000053	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0014672_11	phrog_8	42.9	0.0000000000093	transcriptional regulator	transcription regulation
UniRef90	UHGV-0014672_11	UniRef90_UPI00077900C6	62.0	0.00000000784	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0014672_11	888049.HMPREF8578_0759	54.7	0.000000671	sequence-specific DNA binding	N/A
Pfam	UHGV-0014672_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0014672_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0014672_12	phrog_298	80.1	7.5e-24	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014672_12	UniRef90_A0A1C5T0L2	90.1	9.63e-19	PD-(D/E)XK nuclease superfamily	N/A
eggNOG-mapper	UHGV-0014672_12	1218075.BAYA01000003_gene606	78.6	0.00000000000000331	N/A	N/A
structural_annotation	UHGV-0014672_12	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0014672_14	phrog_561	130.6	3.8e-39	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014672_14	UniRef90_A0A174RC35	230.0	0	RecT family	N/A
eggNOG-mapper	UHGV-0014672_14	1129145.H2BD49_9CAUD	157.0	5.60519e-45	DNA metabolic process	N/A
Pfam	UHGV-0014672_14	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0014672_14	PF03837,TIGR01913	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014672_16	PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-0014672_17	phrog_2562	124.0	1.7e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014672_17	UniRef90_UPI00189A2195	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-0014672_17	1235790.C805_00030	179.0	0	N/A	N/A
Pfam	UHGV-0014672_17	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0014672_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0014672_19	phrog_1770	102.8	3.3e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014672_19	UniRef90_A0A1L8CM45	100.0	2.89e-24	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0014672_19	994601.G9BW80_9CAUD	98.6	3.3e-24	nucleic acid binding	N/A
structural_annotation	UHGV-0014672_19	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0014672_20	K05129	42.2	0.000000000000014	MUSK; muscle, skeletal, receptor tyrosine kinase [EC:2.7.10.1]	N/A
PHROG	UHGV-0014672_20	phrog_15773	68.8	6.2e-20	N/A	unknown function
dbAPIS	UHGV-0014672_20	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
UniRef90	UHGV-0014672_21	UniRef90_A0A345KQM6	86.3	7.58e-17	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0014672_21	1589750.A0A0C5AEL6_9CAUD	82.8	2.49e-16	N/A	N/A
KOfam	UHGV-0014672_26	K03091	87.2	2.7e-25	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-0014672_26	UniRef90_A0A316LD95	59.3	0.0000000617	Sigma70_r2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0014672_26	500633.CLOHIR_01562	52.4	0.00000665	Belongs to the sigma-70 factor family	N/A
Pfam	UHGV-0014672_26	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0014672_26	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-0014672_26	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0014672_26	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0014672_26	PF00196,MF_00959,NF006158,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0014672_27	K01520	164.3	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0014672_27	phrog_135	133.7	9.79999e-40	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014672_27	UniRef90_UPI001873736C	189.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0014672_27	1282887.AUJG01000016_gene1113	155.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0014672_27	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0014672_27	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0014672_27	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0014672_27	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0014672_28	1121405.dsmv_2591	58.9	0.0000000112	N/A	N/A
Pfam	UHGV-0014672_30	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
UniRef90	UHGV-0014672_31	UniRef90_A0A810QFN4	493.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0014672_31	693746.OBV_01590	350.0	0	N/A	N/A
eggNOG-mapper	UHGV-0014672_32	693746.OBV_01600	57.8	0.00000208	N/A	N/A
PHROG	UHGV-0014672_33	phrog_20388	91.1	1.1e-26	endolysin	lysis
UniRef90	UHGV-0014672_33	UniRef90_UPI0018CC5E5E	98.6	7.32e-21	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0014672_33	1203606.HMPREF1526_00253	102.0	4.14e-22	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0014672_33	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0014672_33	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0014672_33	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0014672_33	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0014672_34	phrog_27545	87.6	1.5e-25	N/A	unknown function
UniRef90	UHGV-0014672_34	UniRef90_R6ELD6	72.4	0.000000000000183	Glycosyl hydrolase family 18 family protein	N/A
eggNOG-mapper	UHGV-0014672_34	1122971.BAME01000151_gene6566	103.0	1.51e-25	N/A	N/A
structural_annotation	UHGV-0014672_37	PF07210,PF01404,TIGR03000,NF038128	N/A	N/A	N/A	N/A
PHROG	UHGV-0014672_38	phrog_13518	56.8	1.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0014672_38	1408422.JHYF01000026_gene3527	93.2	2.09e-20	nuclear chromosome segregation	N/A
COG	UHGV-0014672_38	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0014672_39	phrog_5107	40.0	0.000000000031	amidase	lysis
UniRef90	UHGV-0014672_39	UniRef90_A0A4D7ASB8	501.0	0	N/A	N/A
eggNOG-mapper	UHGV-0014672_39	1519439.JPJG01000011_gene54	510.0	0	N/A	N/A
structural_annotation	UHGV-0014672_39	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014672_40	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0014672_41	1519439.JPJG01000011_gene57	125.0	8.98e-35	N/A	N/A
structural_annotation	UHGV-0014672_41	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0014672_42	phrog_1129	62.5	5.1e-18	holin	lysis
UniRef90	UHGV-0014672_42	UniRef90_A0A0D8J2M2	118.0	6.65e-33	Enolase	N/A
eggNOG-mapper	UHGV-0014672_42	665956.HMPREF1032_03272	116.0	6.26e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0014672_42	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0014672_42	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0014672_43	phrog_1863	66.8	1.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0014672_43	748224.HMPREF9436_00408	95.5	5.03e-25	N/A	N/A
PHROG	UHGV-0014672_44	phrog_422	120.9	1e-35	major head protein	head and packaging
UniRef90	UHGV-0014672_44	UniRef90_A0A8J6JH37	296.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0014672_44	693746.OBV_01700	217.0	0	N/A	N/A
Pfam	UHGV-0014672_44	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0014672_44	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0014672_46	phrog_156	85.1	3.4e-26	portal protein	head and packaging
eggNOG-mapper	UHGV-0014672_46	693746.OBV_01670	503.0	0	N/A	N/A
structural_annotation	UHGV-0014672_46	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0014672_49	K06909	49.3	0.000000000000069	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0014672_49	phrog_2	47.3	0.00000000000047	terminase large subunit	head and packaging
UniRef90	UHGV-0014672_49	UniRef90_A0A1M5YHQ5	290.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0014672_49	693746.OBV_01690	254.0	0	phage Terminase large subunit	N/A
COG	UHGV-0014672_49	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0014672_49	PF20441,MF_04148,TIGR01547,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0014672_50	phrog_374	157.3	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014672_50	UniRef90_A0A6L8SWJ4	141.0	5.15e-39	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0014672_50	742767.HMPREF9456_02044	150.0	2.11596e-43	N/A	N/A
PHROG	UHGV-0014672_51	phrog_979	49.0	0.00000000000007	terminase large subunit	head and packaging
UniRef90	UHGV-0014672_51	UniRef90_K1TA53	123.0	4.42e-33	Phage terminase, large subunit, PBSX (Fragment)	N/A
eggNOG-mapper	UHGV-0014672_51	693746.OBV_01690	129.0	6.52e-34	phage Terminase large subunit	N/A
COG	UHGV-0014672_51	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0014672_54	phrog_15863	153.3	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0014672_54	UniRef90_A0A1Y3R3M0	229.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0014672_54	693746.OBV_01780	174.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0014672_54	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-0014672_55	phrog_32772	109.6	1.2e-32	N/A	unknown function
structural_annotation	UHGV-0014672_55	NF010188,COG2157	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014672_57	PF17917	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014672_60	UniRef90_A0A7M1RTM1	71.2	0.0000000000029	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0014672_60	1408437.JNJN01000043_gene801	72.8	0.00000000000013	N/A	N/A