UHGV-0014844 (vOTU-042736)

Viral Genome: UHGV-0014844

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0014844
vOTU ID	vOTU-042736
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_17_1054__NODE_1698_length_43562_cov_9.803564
Associated BioSample	SAMEA4765514
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.19
Jumbo phage	No

Genome content
Genome length (bp)	43,485
GC content	56.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	96%
Average CDS length (bps)	659.95
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0014844_3	phrog_15594	67.0	2.5e-19	N/A	unknown function
structural_annotation	UHGV-0014844_3	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_4	phrog_881	86.0	2.4e-25	holin	lysis
UniRef90	UHGV-0014844_4	UniRef90_A0A4Q7P349	117.0	4.51e-33	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0014844_4	742740.HMPREF9474_02251	115.0	2.36e-33	Putative phage holin Dp-1	N/A
Pfam	UHGV-0014844_4	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0014844_4	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_5	phrog_937	53.0	0.0000000000000068	hemolysin	other
eggNOG-mapper	UHGV-0014844_5	1297617.JPJD01000099_gene2176	50.1	0.00000118	N/A	N/A
PHROG	UHGV-0014844_6	phrog_12105	68.4	4.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0014844_6	1226322.HMPREF1545_03850	79.3	0.0000000000000116	N/A	N/A
PHROG	UHGV-0014844_7	phrog_606	69.7	5.2e-21	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0014844_7	1226322.HMPREF1545_03842	69.7	0.0000000000045	DNA-packaging protein gp3	N/A
Pfam	UHGV-0014844_7	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0014844_7	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_9	phrog_3584	124.6	7e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0014844_9	1226322.HMPREF1545_03841	155.0	6.33387e-43	N/A	N/A
structural_annotation	UHGV-0014844_9	PF01446,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0014844_14	246199.CUS_4485	58.2	0.0000000543	N/A	N/A
PHROG	UHGV-0014844_18	phrog_2245	99.9	2.4e-29	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0014844_18	UniRef90_A0A4U9RLZ8	81.3	3.39e-18	N/A	N/A
eggNOG-mapper	UHGV-0014844_18	293826.Amet_2596	88.6	4.59e-21	N/A	N/A
structural_annotation	UHGV-0014844_18	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_19	phrog_599	42.3	0.000000000016	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0014844_19	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0014844_19	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0014844_20	phrog_355	61.0	1.8e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014844_20	UniRef90_A0A415G5B2	144.0	7.31478e-43	N/A	N/A
eggNOG-mapper	UHGV-0014844_20	397290.C810_05229	140.0	4.48976e-42	N/A	N/A
Pfam	UHGV-0014844_20	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0014844_20	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_22	phrog_5781	94.5	1.2e-27	N/A	unknown function
UniRef90	UHGV-0014844_22	UniRef90_A0A2V2FSM6	112.0	6.19e-30	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0014844_22	573061.Clocel_3558	97.8	3.99e-25	N/A	N/A
Pfam	UHGV-0014844_22	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0014844_22	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0014844_22	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
Pfam	UHGV-0014844_23	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0014844_23	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-0014844_24	K00571	111.1	1.3e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0014844_24	phrog_67	97.0	1.2e-28	DNA methyltransferase	other
UniRef90	UHGV-0014844_24	UniRef90_A0A1C6E5W1	419.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0014844_24	411468.CLOSCI_00299	381.0	0	DNA methylase	N/A
PADLOC	UHGV-0014844_24	MTase_II_00157	91.7	9.4e-27	Type II methyltransferase	RM
Pfam	UHGV-0014844_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0014844_24	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0014844_24	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0014844_25	K22300	55.5	0.0000000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0014844_25	phrog_8	48.6	0.00000000000019	transcriptional regulator	transcription regulation
Pfam	UHGV-0014844_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0014844_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0014844_27	693746.OBV_24030	53.9	0.00000174	N/A	N/A
PHROG	UHGV-0014844_32	phrog_7566	91.5	5.5e-27	N/A	unknown function
UniRef90	UHGV-0014844_32	UniRef90_A0A3D5LSW4	57.8	0.00000000555	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0014844_32	1507.HMPREF0262_00433	101.0	3.65e-27	N/A	N/A
UniRef90	UHGV-0014844_36	UniRef90_A0A374UNQ5	66.6	0.000000000000634	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0014844_36	642492.Clole_2800	56.6	0.000000000691	N/A	N/A
Pfam	UHGV-0014844_36	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-0014844_36	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0014844_38	K22300	64.4	2.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0014844_38	phrog_8	53.0	0.0000000000000054	transcriptional regulator	transcription regulation
UniRef90	UHGV-0014844_38	UniRef90_A0A373VSC9	120.0	1.15e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0014844_38	903814.ELI_1263	110.0	9.72e-30	Helix-turn-helix domain	N/A
Pfam	UHGV-0014844_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0014844_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0014844_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0014844_41	97138.C820_02123	62.0	0.000000000829	Staphylococcal nuclease homologues	N/A
Pfam	UHGV-0014844_41	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-0014844_41	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
Pfam	UHGV-0014844_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0014844_43	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0014844_44	K14059	137.7	1.4e-40	int; integrase	N/A
PHROG	UHGV-0014844_44	phrog_1	138.9	4.19997e-41	integrase	integration and excision
UniRef90	UHGV-0014844_44	UniRef90_A0A174DBH0	280.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0014844_44	641112.ACOK01000111_gene1860	100.0	7.34e-21	Phage integrase family	N/A
Pfam	UHGV-0014844_44	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0014844_44	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0014844_44	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014844_45	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_46	phrog_20016	189.5	0	N/A	unknown function
UniRef90	UHGV-0014844_46	UniRef90_A0A285PT46	192.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0014844_46	1226322.HMPREF1545_00077	168.0	0	N/A	N/A
structural_annotation	UHGV-0014844_46	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_47	phrog_16490	118.7	2.2e-35	N/A	unknown function
eggNOG-mapper	UHGV-0014844_47	1408437.JNJN01000043_gene803	140.0	3.75e-38	N/A	N/A
PHROG	UHGV-0014844_48	phrog_22984	63.4	5.3e-19	N/A	unknown function
PHROG	UHGV-0014844_49	phrog_21718	83.1	2.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0014844_49	476272.RUMHYD_01768	85.1	1.56e-19	N/A	N/A
PHROG	UHGV-0014844_50	phrog_3754	104.5	8.7e-31	N/A	unknown function
eggNOG-mapper	UHGV-0014844_50	1226322.HMPREF1545_00073	159.0	0	N/A	N/A
eggNOG-mapper	UHGV-0014844_51	1226322.HMPREF1545_00787	459.0	0	N/A	N/A
eggNOG-mapper	UHGV-0014844_52	1203606.HMPREF1526_02741	77.4	0.000000000000326	N/A	N/A
PHROG	UHGV-0014844_53	phrog_156	208.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0014844_53	1519439.JPJG01000060_gene1886	537.0	0	N/A	N/A
structural_annotation	UHGV-0014844_53	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0014844_54	K06909	220.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0014844_54	phrog_3717	208.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0014844_54	UniRef90_A0A1Y3SC75	569.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0014844_54	1226322.HMPREF1545_03843	563.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0014844_54	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0014844_54	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0014844_54	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0014844_54	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_55	phrog_511	164.4	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0014844_55	1226322.HMPREF1545_00785	261.0	0	N/A	N/A
structural_annotation	UHGV-0014844_55	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_57	phrog_371	109.6	3.1e-32	major head protein	head and packaging
UniRef90	UHGV-0014844_57	UniRef90_A0A8F2JBL2	249.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0014844_57	1226322.HMPREF1545_03848	288.0	0	N/A	N/A
structural_annotation	UHGV-0014844_57	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_58	phrog_24113	88.6	4.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0014844_58	1226322.HMPREF1545_03847	80.5	2.31e-17	N/A	N/A
structural_annotation	UHGV-0014844_58	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_59	phrog_35275	131.6	1.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-0014844_59	1226322.HMPREF1545_03846	114.0	1.77e-26	N/A	N/A
structural_annotation	UHGV-0014844_61	PF16509,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0014844_62	phrog_21357	104.3	9.5e-31	endolysin	lysis
UniRef90	UHGV-0014844_62	UniRef90_UPI0018AB78B4	243.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0014844_62	97139.C824_00684	234.0	0	lysozyme activity	N/A
Pfam	UHGV-0014844_62	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0014844_62	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0014844_62	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0014844_62	PF01471,PF10030,TIGR02594,NF038080,COG3409,COG3942	N/A	N/A	N/A	N/A
KOfam	UHGV-0014844_63	K17256	48.1	0.000000000000038	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	N/A
PHROG	UHGV-0014844_63	phrog_35892	87.0	8.19998e-41	N/A	unknown function
Pfam	UHGV-0014844_63	PF01462	N/A	N/A	Leucine rich repeat N-terminal domain	LRRNT
Pfam	UHGV-0014844_63	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5