UHGV-0015125 (vOTU-104770)

Viral Genome: UHGV-0015125

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0015125
vOTU ID	vOTU-104770
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_E_4_1526__NODE_2182_length_38898_cov_14.348368_1
Associated BioSample	SAMEA4765817
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.73 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9728
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.88
Jumbo phage	No

Genome content
Genome length (bp)	32,762
GC content	54.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	95%
Average CDS length (bps)	688.13
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0015125_1	K15655	618.6	0	srfAB, licB, lchAB; surfactin/lichenysin synthetase B	N/A
PHROG	UHGV-0015125_1	phrog_28622	261.7	0	N/A	unknown function
UniRef90	UHGV-0015125_1	UniRef90_A0A351VBV4	1085.0	0	Carrier domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0015125_1	1408324.JNJK01000019_gene2479	795.0	0	AMP-binding enzyme	N/A
Pfam	UHGV-0015125_1	PF00501	N/A	N/A	AMP-binding enzyme	AMP-binding
Pfam	UHGV-0015125_1	PF13193	N/A	N/A	AMP-binding enzyme C-terminal domain	AMP-binding_C
Pfam	UHGV-0015125_1	PF00550	N/A	N/A	Phosphopantetheine attachment site	PP-binding
Pfam	UHGV-0015125_1	PF07993	N/A	N/A	Male sterility protein	NAD_binding_4
COG	UHGV-0015125_1	COG1020	N/A	N/A	EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase	N/A
KOfam	UHGV-0015125_2	K07727	65.1	1.7e-18	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0015125_2	phrog_3	41.7	0.000000000044	transcriptional repressor	transcription regulation
UniRef90	UHGV-0015125_2	UniRef90_A0A1C6CHW2	78.6	9.96e-18	Conjugal transfer protein TrbA	N/A
eggNOG-mapper	UHGV-0015125_2	1160721.RBI_II00518	70.9	0.00000000000000123	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0015125_2	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0015125_2	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0015125_2	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0015125_3	K06223	208.7	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0015125_3	phrog_56	176.2	0	DNA methyltransferase	other
UniRef90	UHGV-0015125_3	UniRef90_A0A1C6CIL1	346.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0015125_3	931626.Awo_c34920	320.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0015125_3	MTase_II_00039	142.0	8.39938e-42	Type II methyltransferase	RM
Pfam	UHGV-0015125_3	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0015125_3	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0015125_3	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0015125_4	K01447	89.5	5.5e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0015125_4	phrog_9611	105.4	5.8e-31	endolysin	lysis
UniRef90	UHGV-0015125_4	UniRef90_R5GLE2	158.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0015125_4	1211844.CBLM010000119_gene3421	120.0	1.07e-31	Ami_2	N/A
Pfam	UHGV-0015125_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0015125_4	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0015125_4	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0015125_4	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015125_5	1121334.KB911071_gene1966	58.9	0.000000000139	N/A	N/A
PHROG	UHGV-0015125_6	phrog_1863	74.5	7.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0015125_6	1203606.HMPREF1526_02027	99.8	1.09e-26	N/A	N/A
PHROG	UHGV-0015125_8	phrog_23052	147.6	6.86636e-44	N/A	unknown function
eggNOG-mapper	UHGV-0015125_8	243164.DET1076	144.0	1.04e-33	N/A	N/A
structural_annotation	UHGV-0015125_8	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_9	phrog_1194	55.9	7e-16	N/A	unknown function
Pfam	UHGV-0015125_9	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0015125_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_10	phrog_1535	142.9	2.29953e-42	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0015125_10	397290.C810_05237	234.0	0	tape measure	N/A
COG	UHGV-0015125_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0015125_11	phrog_888	135.5	1.90001e-40	N/A	unknown function
UniRef90	UHGV-0015125_11	UniRef90_A0A8J8MQH6	135.0	5.5e-35	N/A	N/A
eggNOG-mapper	UHGV-0015125_11	1151292.QEW_1347	123.0	9.68e-31	Short C-terminal domain	N/A
Pfam	UHGV-0015125_11	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
PHROG	UHGV-0015125_12	phrog_706	105.7	4.3e-31	N/A	unknown function
UniRef90	UHGV-0015125_12	UniRef90_A0A542AIV5	147.0	1.02995e-41	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0015125_12	1235790.C805_00084	101.0	2.66e-24	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0015125_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0015125_12	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015125_13	UniRef90_A0A2Z4QA03	90.1	2.48e-20	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-0015125_13	1120746.CCNL01000014_gene2103	115.0	6.51e-31	N/A	N/A
structural_annotation	UHGV-0015125_13	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_14	phrog_3099	129.2	2.7e-38	N/A	unknown function
eggNOG-mapper	UHGV-0015125_14	645991.Sgly_0346	119.0	7.24e-32	N/A	N/A
structural_annotation	UHGV-0015125_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_15	phrog_3266	53.9	0.0000000000000029	tail completion	connector
eggNOG-mapper	UHGV-0015125_15	1120746.CCNL01000014_gene2101	62.8	0.0000000000579	N/A	N/A
structural_annotation	UHGV-0015125_15	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_16	phrog_556	106.7	1.3e-31	minor head protein	head and packaging
UniRef90	UHGV-0015125_16	UniRef90_A0A542AIW0	102.0	8.32e-26	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0015125_16	663278.Ethha_0493	87.0	2.51e-20	Minor capsid protein	N/A
Pfam	UHGV-0015125_16	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
PHROG	UHGV-0015125_17	phrog_3366	69.2	6.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0015125_17	1120998.AUFC01000030_gene2238	61.6	0.000000000224	N/A	N/A
structural_annotation	UHGV-0015125_17	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_18	phrog_541	87.3	1.4e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0015125_18	663278.Ethha_0495	54.3	0.0000000959	N/A	N/A
PHROG	UHGV-0015125_19	phrog_422	331.1	0	major head protein	head and packaging
UniRef90	UHGV-0015125_19	UniRef90_R5H4X0	350.0	0	Lj928 prophage protein	N/A
eggNOG-mapper	UHGV-0015125_19	203119.Cthe_2479	347.0	0	N/A	N/A
structural_annotation	UHGV-0015125_19	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_20	phrog_194	59.1	9.2e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0015125_20	UniRef90_A0A1M7NIT0	56.6	0.00000146	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0015125_20	545697.HMPREF0216_02848	68.9	0.0000000000059	Phage minor structural protein GP20	N/A
Pfam	UHGV-0015125_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0015125_20	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_22	phrog_581	263.1	0	minor head protein	head and packaging
UniRef90	UHGV-0015125_22	UniRef90_A0A1C6GGW2	282.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0015125_22	1292035.H476_1017	254.0	0	N/A	N/A
Pfam	UHGV-0015125_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0015125_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015125_22	PF06152,PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_23	phrog_533	239.9	0	portal protein	head and packaging
UniRef90	UHGV-0015125_23	UniRef90_R5H044	397.0	0	Phage portal protein putative A118 family	N/A
eggNOG-mapper	UHGV-0015125_23	883114.HMPREF9709_01198	138.0	2.81e-33	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0015125_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0015125_24	K06909	122.4	5.1e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0015125_24	phrog_2	134.4	1.3e-39	terminase large subunit	head and packaging
UniRef90	UHGV-0015125_24	UniRef90_R5LMY1	381.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0015125_24	592031.GCWU000322_00074	247.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0015125_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0015125_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0015125_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0015125_24	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_25	phrog_309	40.9	0.000000000022	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0015125_25	1160721.RBI_II00544	58.5	0.000000011	N/A	N/A
structural_annotation	UHGV-0015125_25	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0015125_26	K05785	55.9	6.5e-16	rfaH; transcriptional antiterminator RfaH	N/A
PHROG	UHGV-0015125_26	phrog_6386	69.6	4.3e-20	transcription antiterminator	transcription regulation
UniRef90	UHGV-0015125_26	UniRef90_A0A374HXW9	104.0	2.22e-25	NGN domain-containing protein	N/A
eggNOG-mapper	UHGV-0015125_26	485916.Dtox_4226	74.7	0.0000000000000166	antitermination protein NusG	N/A
Pfam	UHGV-0015125_26	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0015125_26	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0015125_26	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_27	phrog_426	80.9	2.2e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0015125_27	UniRef90_R5GR06	263.0	0	PF11985 family protein	N/A
eggNOG-mapper	UHGV-0015125_27	1160721.RBI_II00546	159.0	0	N/A	N/A
Pfam	UHGV-0015125_27	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0015125_27	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_28	phrog_25462	104.2	7.1e-31	N/A	unknown function
UniRef90	UHGV-0015125_28	UniRef90_A0A349GP70	83.2	1.47e-18	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-0015125_28	1160721.RBI_II00547	100.0	3.79e-26	N/A	N/A
structural_annotation	UHGV-0015125_28	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015125_29	411473.RUMCAL_01917	64.3	0.00000000000489	N/A	N/A
COG	UHGV-0015125_30	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0015125_30	PF08765,NF040785,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_31	phrog_286	45.7	0.0000000000012	N/A	unknown function
UniRef90	UHGV-0015125_31	UniRef90_UPI000F51F9E5	72.8	0.000000000000371	regulatory protein GemA	N/A
eggNOG-mapper	UHGV-0015125_31	411473.RUMCAL_01915	62.0	0.000000000738	N/A	N/A
Pfam	UHGV-0015125_31	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0015125_31	PF06252	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015125_32	1160721.RBI_II00551	99.8	4.1e-23	N/A	N/A
AcrCatalog	UHGV-0015125_32	cluster_71843	99.8	1.27e-27	NA	N/A
UniRef90	UHGV-0015125_33	UniRef90_R5GQZ8	100.0	6.74e-26	Putative SpoVT / AbrB like domain protein	N/A
eggNOG-mapper	UHGV-0015125_33	552398.HMPREF0866_03129	62.0	0.0000000000136	SpoVT / AbrB like domain	N/A
COG	UHGV-0015125_33	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0015125_33	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_34	phrog_5671	105.9	2.8e-31	N/A	unknown function
eggNOG-mapper	UHGV-0015125_34	621372.ACIH01000097_gene2801	108.0	1.49e-28	N/A	N/A
KOfam	UHGV-0015125_35	K02315	144.9	7.30076e-43	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0015125_35	phrog_50	129.9	2e-38	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015125_35	UniRef90_R5H704	315.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0015125_35	1235797.C816_01049	166.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0015125_35	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0015125_35	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0015125_35	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_36	phrog_19658	76.6	3.7e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0015125_36	86416.Clopa_0322	67.8	0.0000000000224	DnaD domain protein	N/A
COG	UHGV-0015125_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0015125_38	phrog_4292	74.6	7.4e-22	N/A	unknown function
UniRef90	UHGV-0015125_38	UniRef90_A0A7G3VS96	60.8	0.0000000000384	Putative NHN endonuclease	N/A
eggNOG-mapper	UHGV-0015125_38	1121091.AUMP01000032_gene3076	67.8	0.0000000000000113	N/A	N/A
KOfam	UHGV-0015125_39	K12283	63.5	2.9e-18	mshM; MSHA biogenesis protein MshM	N/A
PHROG	UHGV-0015125_39	phrog_296	126.2	3.4e-37	DNA transposition protein	integration and excision
UniRef90	UHGV-0015125_39	UniRef90_A0A175A3H1	340.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0015125_39	663278.Ethha_0076	161.0	1.82169e-44	AAA domain	N/A
Pfam	UHGV-0015125_39	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0015125_39	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-0015125_39	PF13401,MF_01407,TIGR03015,COG2842	N/A	N/A	N/A	N/A
KOfam	UHGV-0015125_40	K07497	47.9	0.00000000000021	K07497; putative transposase	N/A
PHROG	UHGV-0015125_40	phrog_310	336.0	0	transposase	integration and excision
UniRef90	UHGV-0015125_40	UniRef90_R5H7J6	827.0	0	Integrase core domain protein	N/A
eggNOG-mapper	UHGV-0015125_40	1160721.RBI_II00555	608.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-0015125_40	TnsB_0_V-K	54.8	2.2e-16	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-0015125_40	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0015125_40	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0015125_40	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0015125_44	phrog_130	134.1	1.2e-39	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0015125_44	UniRef90_UPI000F52F993	242.0	0	BRO family protein	N/A
eggNOG-mapper	UHGV-0015125_44	445972.ANACOL_00517	175.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0015125_44	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0015125_44	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0015125_44	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0015125_45	K22300	51.4	0.000000000000024	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0015125_45	phrog_8	53.5	0.0000000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-0015125_45	UniRef90_A0A1M6L004	60.5	0.000000000133	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0015125_45	888727.HMPREF9092_0973	55.8	0.0000000285	N/A	N/A
Pfam	UHGV-0015125_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0015125_45	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0015125_45	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A