UHGV-0015299 (vOTU-042753)

Viral Genome: UHGV-0015299

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0015299
vOTU ID	vOTU-042753
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_21_1706__NODE_2343_length_31561_cov_190.458392
Associated BioSample	SAMEA4765986
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9787
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.25
Jumbo phage	No

Genome content
Genome length (bp)	31,493
GC content	49.73%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	93%
Average CDS length (bps)	588.06
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0015299_3	UniRef90_A0A8D9PDK2	67.8	0.00000000000145	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0015299_5	phrog_36	43.4	0.0000000000058	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0015299_5	428125.CLOLEP_01806	79.7	7.35e-17	N/A	N/A
Pfam	UHGV-0015299_5	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0015299_5	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_6	phrog_2657	180.9	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0015299_6	UniRef90_A0A7X5DZ93	308.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0015299_6	33035.JPJF01000043_gene993	291.0	0	N/A	N/A
Pfam	UHGV-0015299_6	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0015299_6	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0015299_6	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0015299_6	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_7	phrog_119	59.7	4.8e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015299_7	UniRef90_A0A2V2GQ57	124.0	4.29e-36	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0015299_7	1226322.HMPREF1545_00111	94.0	1.15e-24	HNH nucleases	N/A
Pfam	UHGV-0015299_7	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0015299_7	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0015299_8	phrog_361	68.9	8.2e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0015299_8	UniRef90_A0A1C6H6I9	169.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0015299_8	1329516.JPST01000017_gene431	49.3	0.00000861	Phage terminase, small subunit	N/A
Pfam	UHGV-0015299_8	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0015299_8	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0015299_8	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_9	phrog_9	298.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0015299_9	UniRef90_A0A2V2GQ67	1150.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0015299_9	1226322.HMPREF1545_00113	868.0	0	Phage Terminase	N/A
Pfam	UHGV-0015299_9	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0015299_9	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0015299_9	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0015299_9	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_10	phrog_12	176.6	0	portal protein	head and packaging
UniRef90	UHGV-0015299_10	UniRef90_A0A2V2GQD5	684.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0015299_10	1226322.HMPREF1545_00114	503.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0015299_10	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0015299_10	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0015299_10	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0015299_10	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0015299_11	K06904	146.2	2.70451e-43	N/A	N/A
PHROG	UHGV-0015299_11	phrog_80	164.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0015299_11	UniRef90_A0A2V2GNJ3	352.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0015299_11	1226322.HMPREF1545_00115	238.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0015299_11	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0015299_11	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0015299_11	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0015299_11	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_12	phrog_10	222.9	0	major head protein	head and packaging
UniRef90	UHGV-0015299_12	UniRef90_A0A2V2GRA2	906.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0015299_12	1226322.HMPREF1545_00116	573.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0015299_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0015299_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0015299_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0015299_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_13	phrog_2550	85.5	2.9e-25	N/A	unknown function
UniRef90	UHGV-0015299_13	UniRef90_UPI0008717716	70.9	0.0000000000000399	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0015299_13	1226322.HMPREF1545_00117	108.0	6.16e-30	N/A	N/A
structural_annotation	UHGV-0015299_13	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_14	phrog_1951	97.0	1.1e-28	head-tail adaptor	connector
UniRef90	UHGV-0015299_14	UniRef90_A0A2V2GSS5	206.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0015299_14	1226322.HMPREF1545_00118	105.0	5.13e-28	N/A	N/A
NCBIFam	UHGV-0015299_14	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0015299_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015299_15	UniRef90_UPI00073E355A	164.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0015299_15	665956.HMPREF1032_02261	95.1	1.98e-23	N/A	N/A
Pfam	UHGV-0015299_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0015299_15	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015299_16	UniRef90_U2SBX3	101.0	7.46e-26	HTH merR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0015299_16	1226322.HMPREF1545_00120	101.0	1.25e-26	N/A	N/A
structural_annotation	UHGV-0015299_16	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_17	phrog_88	177.5	0	major tail protein	tail
UniRef90	UHGV-0015299_17	UniRef90_A0A2V2GLL2	348.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0015299_17	1226322.HMPREF1545_00121	198.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0015299_17	TIGR01603.1	N/A	N/A	major tail protein	N/A
PHROG	UHGV-0015299_18	phrog_709	97.6	8.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0015299_18	411471.SUBVAR_05858	126.0	5.91e-36	N/A	N/A
structural_annotation	UHGV-0015299_18	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_19	phrog_13339	388.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0015299_19	UniRef90_A0A2V2GLB5	917.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0015299_19	1033743.CAES01000020_gene3130	343.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0015299_19	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0015299_19	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0015299_19	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0015299_19	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_20	phrog_13564	78.1	1.79366e-43	minor tail protein	tail
eggNOG-mapper	UHGV-0015299_20	411471.SUBVAR_05861	198.0	0	N/A	N/A
structural_annotation	UHGV-0015299_20	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_21	phrog_7064	91.9	0	tail protein	tail
eggNOG-mapper	UHGV-0015299_21	665956.HMPREF1032_00106	252.0	0	N/A	N/A
Pfam	UHGV-0015299_21	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0015299_21	PF14594,TIGR03361,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_22	phrog_5811	78.0	7.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-0015299_22	665956.HMPREF1032_00105	124.0	2.02e-29	N/A	N/A
PHROG	UHGV-0015299_26	phrog_937	53.2	0.0000000000000052	hemolysin	other
eggNOG-mapper	UHGV-0015299_26	478749.BRYFOR_07561	80.9	1.75e-18	N/A	N/A
KOfam	UHGV-0015299_28	K01447	83.6	3.1e-24	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0015299_28	phrog_15001	204.0	0	endolysin	lysis
UniRef90	UHGV-0015299_28	UniRef90_A0A8D9UHF0	471.0	0	PGRP protein	N/A
eggNOG-mapper	UHGV-0015299_28	411483.FAEPRAA2165_03397	199.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0015299_28	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0015299_28	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0015299_28	PF01510,NF008758,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0015299_29	K14059	130.2	2.9e-38	int; integrase	N/A
PHROG	UHGV-0015299_29	phrog_1	125.8	4.2e-37	integrase	integration and excision
UniRef90	UHGV-0015299_29	UniRef90_UPI001E298856	518.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0015299_29	748224.HMPREF9436_03382	268.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0015299_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0015299_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0015299_29	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015299_30	PF08797,PF01668,TIGR00086,COG0691	N/A	N/A	N/A	N/A
COG	UHGV-0015299_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0015299_32	UniRef90_UPI0018995761	87.0	2.74e-21	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0015299_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0015299_32	PF13560,NF040507,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015299_34	UniRef90_UPI001E431871	125.0	3.71e-36	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0015299_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0015299_34	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0015299_34	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015299_35	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_38	phrog_4433	296.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0015299_38	767434.Fraau_1460	115.0	7.23e-28	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0015299_38	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0015299_38	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_40	phrog_14970	199.1	0	N/A	unknown function
UniRef90	UHGV-0015299_40	UniRef90_UPI00123F00F5	174.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0015299_40	428127.EUBDOL_01248	160.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0015299_40	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0015299_40	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0015299_40	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_41	phrog_72	56.2	4.4e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015299_41	UniRef90_A0A8D9PDS2	160.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0015299_41	445972.ANACOL_01825	140.0	4.63999e-40	N/A	N/A
structural_annotation	UHGV-0015299_41	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_42	phrog_7566	52.1	0.0000000000000098	N/A	unknown function
eggNOG-mapper	UHGV-0015299_42	693746.OBV_24070	71.6	0.0000000000000121	N/A	N/A
KOfam	UHGV-0015299_43	K03111	136.5	2.9e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0015299_43	phrog_44	137.6	8.10007e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015299_43	UniRef90_UPI001E2A5A6F	226.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0015299_43	445972.ANACOL_01827	127.0	3.76e-36	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0015299_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0015299_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0015299_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0015299_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0015299_43	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_44	phrog_9474	94.1	1.8e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015299_44	UniRef90_A0A8B3R1H0	108.0	5.71e-25	Phage replication protein	N/A
eggNOG-mapper	UHGV-0015299_44	411490.ANACAC_00800	110.0	2.5e-26	N/A	N/A
structural_annotation	UHGV-0015299_44	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-0015299_45	phrog_9804	167.4	0	N/A	unknown function
UniRef90	UHGV-0015299_45	UniRef90_UPI001E312ACC	359.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0015299_45	1121344.JHZO01000003_gene981	181.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0015299_45	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0015299_45	PF11417	N/A	N/A	N/A	N/A
COG	UHGV-0015299_46	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-0015299_48	phrog_3777	79.0	3.6e-23	N/A	unknown function
UniRef90	UHGV-0015299_48	UniRef90_A0A417F883	141.0	9.54004e-41	N/A	N/A
eggNOG-mapper	UHGV-0015299_48	411462.DORLON_00813	60.8	0.000000000372	N/A	N/A
Pfam	UHGV-0015299_48	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-0015299_48	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015299_50	UniRef90_A0A8D9PDQ6	80.9	2.55e-19	Restriction alleviation protein	N/A