UHGV-0015414 (vOTU-086873)

Viral Genome: UHGV-0015414

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0015414
vOTU ID	vOTU-086873
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_17_1727__NODE_3127_length_39149_cov_80.592445
Associated BioSample	SAMEA4766007
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.43 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.979
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-0.04
Jumbo phage	No

Genome content
Genome length (bp)	39,149
GC content	52.26%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	88%
Average CDS length (bps)	584.70
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0015414_1	phrog_979	48.9	0.000000000000072	terminase large subunit	head and packaging
UniRef90	UHGV-0015414_1	UniRef90_K1TA53	125.0	5.49e-34	Phage terminase, large subunit, PBSX (Fragment)	N/A
eggNOG-mapper	UHGV-0015414_1	693746.OBV_01690	129.0	6.52e-34	phage Terminase large subunit	N/A
COG	UHGV-0015414_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0015414_2	1378168.N510_01472	60.5	0.0000000000287	N/A	N/A
PHROG	UHGV-0015414_3	phrog_15863	150.3	7.00649e-45	N/A	unknown function
UniRef90	UHGV-0015414_3	UniRef90_A0A1Y3R3M0	202.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0015414_3	471855.Shel_20200	143.0	2.36007e-41	Heat shock protein DnaJ domain protein	N/A
COG	UHGV-0015414_3	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-0015414_4	phrog_374	200.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0015414_4	645991.Sgly_0324	194.0	0	N/A	N/A
structural_annotation	UHGV-0015414_4	PF18337	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015414_5	PF17917	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015414_8	UniRef90_A0A7M1RS47	62.8	0.00000000188	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0015414_8	1408437.JNJN01000043_gene801	69.3	0.00000000000263	N/A	N/A
KOfam	UHGV-0015414_9	K14059	98.4	1.1e-28	int; integrase	N/A
PHROG	UHGV-0015414_9	phrog_1	111.7	8.4e-33	integrase	integration and excision
UniRef90	UHGV-0015414_9	UniRef90_A0A3D2G173	316.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0015414_9	641112.ACOK01000111_gene1860	108.0	7.93e-24	Phage integrase family	N/A
Pfam	UHGV-0015414_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0015414_9	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0015414_9	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015414_10	UniRef90_A0A3C1K3F5	67.4	0.00000000000405	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0015414_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0015414_10	NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0015414_14	K22300	53.5	0.0000000000000057	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0015414_14	phrog_8	45.1	0.0000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0015414_14	UniRef90_A0A1S2GHY7	54.3	0.0000000499	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0015414_14	1118060.CAGZ01000012_gene16	51.6	0.000000496	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0015414_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0015414_14	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0015414_15	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0015414_20	phrog_298	80.6	4.9e-24	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015414_20	UniRef90_A0A1C5T0L2	90.9	5.43e-19	PD-(D/E)XK nuclease superfamily	N/A
eggNOG-mapper	UHGV-0015414_20	1218075.BAYA01000003_gene606	80.5	6.85e-16	N/A	N/A
structural_annotation	UHGV-0015414_20	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0015414_22	phrog_561	127.4	3.6e-38	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015414_22	UniRef90_A0A174RC35	228.0	0	RecT family	N/A
eggNOG-mapper	UHGV-0015414_22	648757.Rvan_1470	156.0	4.90454e-44	N/A	N/A
Pfam	UHGV-0015414_22	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0015414_22	PF03837,TIGR01913	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015414_24	PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-0015414_25	phrog_2562	122.7	4.1e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015414_25	UniRef90_UPI00189A2195	195.0	0	N/A	N/A
eggNOG-mapper	UHGV-0015414_25	1235790.C805_00030	179.0	0	N/A	N/A
Pfam	UHGV-0015414_25	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0015414_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0015414_27	phrog_1770	103.4	2.1e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015414_27	UniRef90_A0A1L8CM45	103.0	1.28e-25	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0015414_27	994601.G9BW80_9CAUD	100.0	5.85e-25	nucleic acid binding	N/A
structural_annotation	UHGV-0015414_27	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0015414_28	K05129	43.1	6.9e-16	MUSK; muscle, skeletal, receptor tyrosine kinase [EC:2.7.10.1]	N/A
PHROG	UHGV-0015414_28	phrog_15773	67.6	6.8e-25	N/A	unknown function
dbAPIS	UHGV-0015414_28	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
KOfam	UHGV-0015414_36	K03091	86.4	4.6e-25	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-0015414_36	UniRef90_A0A358AU21	54.7	0.00000612	RNA polymerase sporulation sigma factor SigH	N/A
Pfam	UHGV-0015414_36	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0015414_36	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-0015414_36	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0015414_36	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0015414_36	PF00196,MF_00959,NF006158,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0015414_37	K01520	165.8	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0015414_37	phrog_135	132.0	3.2e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015414_37	UniRef90_UPI001873736C	193.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0015414_37	1282887.AUJG01000016_gene1113	155.0	0	N/A	N/A
Pfam	UHGV-0015414_37	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0015414_37	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0015414_37	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0015414_37	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015414_38	1121405.dsmv_2591	60.1	0.00000000426	N/A	N/A
Pfam	UHGV-0015414_40	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
eggNOG-mapper	UHGV-0015414_41	871968.DESME_08840	336.0	0	N/A	N/A
Pfam	UHGV-0015414_41	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
eggNOG-mapper	UHGV-0015414_42	693746.OBV_01600	70.9	0.00000000012	N/A	N/A
PHROG	UHGV-0015414_43	phrog_14030	158.3	0	N/A	unknown function
UniRef90	UHGV-0015414_43	UniRef90_A0A316NTC6	206.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0015414_43	1121115.AXVN01000051_gene809	187.0	0	NLP P60 protein	N/A
Pfam	UHGV-0015414_43	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0015414_43	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0015414_43	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0015414_43	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0015414_44	phrog_27545	86.7	2.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0015414_44	1122971.BAME01000151_gene6566	100.0	3.45e-24	N/A	N/A
structural_annotation	UHGV-0015414_47	PF07210,PF01404,TIGR03000,NF038128	N/A	N/A	N/A	N/A
PHROG	UHGV-0015414_48	phrog_892	61.6	9.7e-31	tail fiber protein	tail
PHROG	UHGV-0015414_49	phrog_5107	40.4	0.000000000022	amidase	lysis
UniRef90	UHGV-0015414_49	UniRef90_A0A4D7ASB8	510.0	0	N/A	N/A
eggNOG-mapper	UHGV-0015414_49	1519439.JPJG01000011_gene54	520.0	0	N/A	N/A
structural_annotation	UHGV-0015414_49	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015414_50	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015414_51	1519439.JPJG01000011_gene57	128.0	5.52e-36	N/A	N/A
structural_annotation	UHGV-0015414_51	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0015414_52	phrog_1129	62.5	5e-18	holin	lysis
UniRef90	UHGV-0015414_52	UniRef90_A0A0D8J2M2	118.0	6.65e-33	Enolase	N/A
eggNOG-mapper	UHGV-0015414_52	665956.HMPREF1032_03272	116.0	6.26e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0015414_52	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0015414_52	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0015414_53	phrog_1863	66.9	1.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0015414_53	748224.HMPREF9436_01412	99.8	9.48e-27	N/A	N/A
PHROG	UHGV-0015414_54	phrog_422	122.4	3.3e-36	major head protein	head and packaging
UniRef90	UHGV-0015414_54	UniRef90_A0A8J6JH37	292.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0015414_54	693746.OBV_01700	213.0	0	N/A	N/A
Pfam	UHGV-0015414_54	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0015414_54	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0015414_56	phrog_156	85.7	7.8e-26	portal protein	head and packaging
eggNOG-mapper	UHGV-0015414_56	693746.OBV_01670	506.0	0	N/A	N/A
structural_annotation	UHGV-0015414_56	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0015414_59	phrog_5653	40.9	0.0000000000012	terminase large subunit	head and packaging
UniRef90	UHGV-0015414_59	UniRef90_A0A810QAS9	231.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0015414_59	693746.OBV_01690	212.0	0	phage Terminase large subunit	N/A
COG	UHGV-0015414_59	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0015414_59	PF20441,MF_04148,TIGR01547,COG5323	N/A	N/A	N/A	N/A