UHGV-0015569 (vOTU-009896)

Viral Genome: UHGV-0015569

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0015569
vOTU ID	vOTU-009896
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_6_1152__NODE_1988_length_44517_cov_9.374190
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.45
Jumbo phage	No

Genome content
Genome length (bp)	44,517
GC content	57.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	95%
Average CDS length (bps)	921.91
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0015569_1	K14059	100.0	3.6e-29	int; integrase	N/A
PHROG	UHGV-0015569_1	phrog_1	131.3	9.8e-39	integrase	integration and excision
UniRef90	UHGV-0015569_1	UniRef90_A0A3D3Y5E0	319.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0015569_1	693746.OBV_41260	217.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0015569_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0015569_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0015569_1	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0015569_2	K07729	59.8	5.7e-17	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0015569_2	phrog_8	49.5	0.0000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0015569_2	UniRef90_R5AVU4	71.6	0.00000000000000336	CI-like repressor	N/A
eggNOG-mapper	UHGV-0015569_2	1120971.AUCA01000009_gene2039	57.0	0.000000011	COG1910 Periplasmic molybdate-binding protein domain	N/A
PADLOC	UHGV-0015569_2	retron_type_VI_hth_cluster2_1	43.5	0.000000000009	N/A	Retron
Pfam	UHGV-0015569_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0015569_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0015569_2	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_4	phrog_10091	102.1	4.4e-30	holin	lysis
UniRef90	UHGV-0015569_4	UniRef90_A0A374DX82	126.0	2.23e-36	Phage holin	N/A
eggNOG-mapper	UHGV-0015569_4	97139.C824_05950	122.0	1.18e-35	Bacteriophage holin	N/A
Pfam	UHGV-0015569_4	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0015569_4	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0015569_4	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015569_4	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_5	phrog_1863	58.7	6.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0015569_5	748224.HMPREF9436_00408	86.7	1.96e-21	N/A	N/A
KOfam	UHGV-0015569_6	K08640	69.5	3.9e-20	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0015569_6	phrog_1493	54.2	0.0000000000000024	endolysin	lysis
UniRef90	UHGV-0015569_6	UniRef90_R5EEL2	123.0	1.62e-31	Putative muramoyl-pentapeptide carboxypeptidase	N/A
eggNOG-mapper	UHGV-0015569_6	1121406.JAEX01000040_gene2121	72.8	0.0000000000000993	N/A	N/A
Pfam	UHGV-0015569_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0015569_6	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0015569_6	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015569_6	PF05951,PF01471,TIGR02869,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_8	phrog_134	57.7	1.6e-16	N/A	unknown function
UniRef90	UHGV-0015569_8	UniRef90_A0A845N2N7	66.6	0.0000000000000904	XkdX family protein	N/A
eggNOG-mapper	UHGV-0015569_8	742740.HMPREF9474_02255	48.1	0.00000033	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0015569_8	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0015569_8	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0015569_8	PF09693,TIGR01669	N/A	N/A	N/A	N/A
KOfam	UHGV-0015569_10	K00986	107.8	1.2e-31	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0015569_10	phrog_1423	202.0	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015569_10	UniRef90_A0A395VDP3	383.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0015569_10	1160721.RBI_I01568	248.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0015569_10	icity0040	92.1	9.8e-27	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0015569_10	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0015569_10	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0015569_10	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_11	phrog_3206	48.8	0.0000000000001	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015569_11	UniRef90_UPI00189E384C	79.3	3.41e-16	four helix bundle protein	N/A
eggNOG-mapper	UHGV-0015569_11	525254.HMPREF0072_1280	55.5	0.0000000742	N/A	N/A
structural_annotation	UHGV-0015569_11	PF05635,NF008911	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_12	phrog_19280	165.8	0	N/A	unknown function
UniRef90	UHGV-0015569_12	UniRef90_A0A412ELS8	278.0	0	N/A	N/A
eggNOG-mapper	UHGV-0015569_12	1160721.RBI_I01569	177.0	0	N/A	N/A
Pfam	UHGV-0015569_12	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0015569_12	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0015569_13	K24355	62.4	5.9e-18	COL23A; collagen type XXIII alpha	N/A
PHROG	UHGV-0015569_13	phrog_6320	59.1	3.9e-17	tail fiber protein	tail
eggNOG-mapper	UHGV-0015569_13	428125.CLOLEP_02045	61.6	0.0000000659	N/A	N/A
Pfam	UHGV-0015569_13	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0015569_13	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0015569_14	K07317	56.3	3.3e-18	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0015569_14	phrog_10089	1526.3	0	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0015569_14	610130.Closa_3704	1039.0	0	SNF2 family N-terminal domain	N/A
Pfam	UHGV-0015569_14	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0015569_14	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0015569_14	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
eggNOG-mapper	UHGV-0015569_15	1410650.JHWL01000003_gene2815	105.0	1.53e-22	N/A	N/A
PHROG	UHGV-0015569_16	phrog_372	138.4	0	tail protein	tail
eggNOG-mapper	UHGV-0015569_16	1416759.AYMR01000009_gene3061	125.0	7.44e-27	N/A	N/A
Pfam	UHGV-0015569_16	PF05895	N/A	N/A	N/A	DUF859
PHROG	UHGV-0015569_18	phrog_511	228.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0015569_18	1410650.JHWL01000003_gene2827	348.0	0	N/A	N/A
structural_annotation	UHGV-0015569_18	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_19	phrog_12105	81.9	5.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0015569_19	1226322.HMPREF1545_03850	65.5	0.00000000000481	N/A	N/A
PHROG	UHGV-0015569_20	phrog_15239	41.3	0.000000000021	N/A	unknown function
PHROG	UHGV-0015569_21	phrog_1357	187.4	0	major head protein	head and packaging
UniRef90	UHGV-0015569_21	UniRef90_A0A3C0NPN1	433.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0015569_21	1410650.JHWL01000003_gene2830	219.0	0	N/A	N/A
Pfam	UHGV-0015569_21	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0015569_21	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0015569_21	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_22	phrog_13908	130.4	1.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0015569_22	1410650.JHWL01000003_gene2831	81.6	0.00000000000000834	N/A	N/A
KOfam	UHGV-0015569_23	K07584	47.9	0.00000000000027	N/A	N/A
PHROG	UHGV-0015569_23	phrog_4478	46.6	0.00000000000036	peptidase	other
eggNOG-mapper	UHGV-0015569_23	1122217.KB899572_gene1147	48.9	0.00000581	Cysteine protease Prp	N/A
Pfam	UHGV-0015569_23	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0015569_23	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015569_23	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_24	phrog_156	297.8	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0015569_24	1410650.JHWL01000003_gene2833	450.0	0	N/A	N/A
structural_annotation	UHGV-0015569_24	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0015569_25	K06909	138.3	7.59994e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0015569_25	phrog_979	122.1	3.8e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0015569_25	UniRef90_A0A810Q5R0	628.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0015569_25	1410650.JHWL01000003_gene2834	595.0	0	N/A	N/A
Pfam	UHGV-0015569_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0015569_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0015569_25	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_26	phrog_1206	44.5	0.0000000000018	terminase small subunit	head and packaging
COG	UHGV-0015569_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0015569_27	phrog_1029	239.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0015569_27	1203606.HMPREF1526_01890	230.0	0	N/A	N/A
structural_annotation	UHGV-0015569_27	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_28	phrog_997	106.6	1.9e-31	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015569_28	UniRef90_R6MCS9	102.0	6.92e-26	N/A	N/A
eggNOG-mapper	UHGV-0015569_28	1519439.JPJG01000059_gene1910	127.0	1.83e-36	N/A	N/A
PHROG	UHGV-0015569_30	phrog_3777	47.8	0.000000000000074	N/A	unknown function
UniRef90	UHGV-0015569_30	UniRef90_A0A3R7APF0	68.2	0.00000000000156	N/A	N/A
eggNOG-mapper	UHGV-0015569_30	767817.Desgi_3545	66.6	0.00000000000109	N/A	N/A
Pfam	UHGV-0015569_30	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0015569_30	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0015569_30	PF12957	N/A	N/A	N/A	N/A
KOfam	UHGV-0015569_33	K00390	85.8	2.6e-26	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0015569_33	phrog_424	90.9	6.6e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0015569_33	UniRef90_A0A373SW63	616.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0015569_33	1235800.C819_02256	579.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0015569_33	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0015569_33	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0015569_33	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_36	phrog_16304	78.5	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0015569_36	33035.JPJF01000071_gene4467	64.7	0.000000000636	N/A	N/A
Pfam	UHGV-0015569_36	PF19808	N/A	N/A	N/A	DUF6291
KOfam	UHGV-0015569_37	K06167	48.5	0.00000000000012	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0015569_37	phrog_392	172.8	0	metal-dependent hydrolase	other
UniRef90	UHGV-0015569_37	UniRef90_UPI00195A5026	274.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0015569_37	665959.HMPREF1013_05341	179.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0015569_37	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0015569_37	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0015569_37	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015569_38	1203606.HMPREF1526_00310	169.0	0	N/A	N/A
KOfam	UHGV-0015569_39	K03546	54.6	1.6e-22	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0015569_39	phrog_77	223.1	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015569_39	UniRef90_A0A3A9HXV3	445.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0015569_39	1382358.JHVN01000024_gene1691	319.0	0	N/A	N/A
Pfam	UHGV-0015569_39	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0015569_39	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0015569_39	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015569_40	596152.DesU5LDRAFT_1910	86.3	3.82e-18	N/A	N/A
structural_annotation	UHGV-0015569_40	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0015569_44	phrog_4068	68.0	1.8e-19	N/A	unknown function
KOfam	UHGV-0015569_45	K22300	59.7	7e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0015569_45	phrog_2328	40.5	0.000000000035	transcriptional repressor	transcription regulation
UniRef90	UHGV-0015569_45	UniRef90_UPI0006BF92BD	80.5	5.69e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0015569_45	1203606.HMPREF1526_01317	73.6	0.00000000000000448	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0015569_45	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0015569_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0015569_45	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A