UHGV-0016040 (vOTU-088588)

Viral Genome: UHGV-0016040

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0016040
vOTU ID	vOTU-088588
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_18_1822__NODE_847_length_65186_cov_28.466909
Associated BioSample	SAMEA4766059
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.71 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9801
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	4.74
Jumbo phage	No

Genome content
Genome length (bp)	65,186
GC content	58.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	100
CDS density	89%
Average CDS length (bps)	582.96
Total tRNA genes	7
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0016040_1	K00558	58.9	7.5e-22	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0016040_1	phrog_116	91.1	1.5e-35	DNA methyltransferase	other
UniRef90	UHGV-0016040_1	UniRef90_A0A6L5TDR3	311.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0016040_1	657322.FPR_26610	248.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
PADLOC	UHGV-0016040_1	oMTase_00004	44.9	1.10002e-42	orphan methyltransferase	RM
Pfam	UHGV-0016040_1	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0016040_1	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0016040_2	phrog_7545	90.1	2.1e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016040_2	UniRef90_UPI000985C129	119.0	5.21e-30	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0016040_2	94624.Bpet0954	73.6	0.000000000000128	HNH endonuclease	N/A
Pfam	UHGV-0016040_2	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-0016040_4	phrog_1384	134.9	4.9e-40	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0016040_4	665956.HMPREF1032_03086	276.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0016040_4	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016040_5	UniRef90_A0A8D9PDK1	119.0	5.65e-33	Anti-repressor	N/A
KOfam	UHGV-0016040_6	K05925	62.5	5.1e-18	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-0016040_6	phrog_359	218.2	0	DNA methyltransferase	other
UniRef90	UHGV-0016040_6	UniRef90_A0A3D1PJR7	291.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0016040_6	400682.PAC_15710341	211.0	0	primary miRNA methylation	N/A
PADLOC	UHGV-0016040_6	MTase_II_00048	215.3	0	Type II methyltransferase	RM
Pfam	UHGV-0016040_6	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-0016040_6	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-0016040_6	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_15	phrog_24603	47.9	0.00000000000015	N/A	unknown function
Pfam	UHGV-0016040_15	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
structural_annotation	UHGV-0016040_15	PF08769,TIGR02875	N/A	N/A	N/A	N/A
KOfam	UHGV-0016040_19	K22300	49.6	0.000000000000084	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0016040_19	phrog_8	62.2	1.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016040_19	UniRef90_UPI0018989C77	80.9	1.08e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0016040_19	608506.COB47_1787	60.5	0.00000000063	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0016040_19	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0016040_19	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0016040_19	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_21	phrog_15503	44.7	0.0000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0016040_21	1308863.U5J9B2_9CAUD	130.0	2.71e-29	N/A	N/A
structural_annotation	UHGV-0016040_21	PF04466,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_23	phrog_2739	53.0	8.3e-30	portal protein	head and packaging
structural_annotation	UHGV-0016040_23	PF07230,MF_04135,TIGR01537,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_25	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_26	phrog_374	206.2	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016040_26	UniRef90_A0A7W0C2S3	183.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0016040_26	742767.HMPREF9456_02044	195.0	0	N/A	N/A
PHROG	UHGV-0016040_27	phrog_3313	57.0	3.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0016040_27	1151292.QEW_0632	60.5	0.000000587	N/A	N/A
structural_annotation	UHGV-0016040_27	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_29	phrog_4088	40.8	0.000000000022	N/A	unknown function
structural_annotation	UHGV-0016040_29	PF03864,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_31	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_32	phrog_31538	44.7	0.0000000000023	N/A	unknown function
PHROG	UHGV-0016040_33	phrog_13589	192.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0016040_33	428125.CLOLEP_01434	243.0	0	N/A	N/A
structural_annotation	UHGV-0016040_36	TIGR02215	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_37	phrog_16444	43.5	0.0000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0016040_37	349161.Dred_0371	61.2	0.000000306	PFAM Ig domain protein, group 2 domain protein	N/A
Pfam	UHGV-0016040_37	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0016040_37	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_37	PF02368,PF18957,MF_04116,NF040788,COG3291,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_40	PF09646	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_41	phrog_937	51.2	0.000000000000024	hemolysin	other
eggNOG-mapper	UHGV-0016040_41	1519439.JPJG01000023_gene533	77.0	4.14e-17	N/A	N/A
structural_annotation	UHGV-0016040_43	PF06488,PF02368,TIGR01603,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_44	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_45	phrog_4211	245.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0016040_45	1235802.C823_04585	181.0	1.58347e-43	Phage-related minor tail protein	N/A
Pfam	UHGV-0016040_45	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0016040_45	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0016040_45	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0016040_45	PF10145,PF05384,TIGR01760	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_46	PF16450,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_47	NF033216	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_48	phrog_1887	169.3	0	tail protein	tail
structural_annotation	UHGV-0016040_48	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_49	PF19266,PF02010,MF_04116,NF032891,TIGR01633,COG3499,COG3506,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_52	phrog_2295	61.2	2.5e-19	N/A	unknown function
Pfam	UHGV-0016040_52	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0016040_52	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_55	phrog_2310	59.1	4.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0016040_55	1151292.QEW_0364	53.5	0.00000000484	N/A	N/A
PHROG	UHGV-0016040_56	phrog_1129	76.7	1.9e-22	holin	lysis
UniRef90	UHGV-0016040_56	UniRef90_A0A1Q6RI18	123.0	5.88e-35	Enolase	N/A
eggNOG-mapper	UHGV-0016040_56	1226322.HMPREF1545_00069	126.0	6.5e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0016040_56	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0016040_56	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_57	phrog_9589	80.0	5.1e-23	endolysin	lysis
UniRef90	UHGV-0016040_57	UniRef90_A0A8D9PDX2	243.0	0	MurNAc-LAA protein	N/A
eggNOG-mapper	UHGV-0016040_57	552398.HMPREF0866_03091	145.0	1.06e-37	CHAP domain	N/A
Pfam	UHGV-0016040_57	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0016040_57	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0016040_57	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0016040_57	PF01520,PF01471,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0016040_58	K04763	140.5	1.49995e-41	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0016040_58	phrog_1	127.1	1.7e-37	integrase	integration and excision
UniRef90	UHGV-0016040_58	UniRef90_UPI0013E0E6C8	113.0	3.07e-25	tyrosine-type recombinase/integrase	N/A
Pfam	UHGV-0016040_58	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0016040_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0016040_58	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0016040_58	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0016040_61	K04487	219.6	0	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	N/A
PHROG	UHGV-0016040_61	phrog_12787	165.3	0	N/A	unknown function
UniRef90	UHGV-0016040_61	UniRef90_G9RS59	198.0	0	Cysteine desulfurase	N/A
eggNOG-mapper	UHGV-0016040_61	665956.HMPREF1032_03231	198.0	0	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	N/A
PADLOC	UHGV-0016040_61	SspA_00001	172.9	0	SspA	SSP
Pfam	UHGV-0016040_61	PF00266	N/A	N/A	Aminotransferase class-V	Aminotran_5
COG	UHGV-0016040_61	COG1104	N/A	N/A	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	N/A
structural_annotation	UHGV-0016040_61	PF00266,MF_00331,TIGR03403,COG1104	N/A	N/A	N/A	N/A
KOfam	UHGV-0016040_62	K03530	97.8	1.5e-28	hupB; DNA-binding protein HU-beta	N/A
PHROG	UHGV-0016040_62	phrog_379	81.9	4.7e-24	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016040_62	UniRef90_A0A7W0NAH0	87.8	8.92e-21	Integration host factor subunit beta	N/A
eggNOG-mapper	UHGV-0016040_62	319225.Plut_1957	85.9	7.93e-21	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	N/A
Pfam	UHGV-0016040_62	PF00216	N/A	N/A	Bacterial DNA-binding protein	Bac_DNA_binding
COG	UHGV-0016040_62	COG0776	N/A	N/A	Bacterial nucleoid DNA-binding protein IHF-alpha	N/A
structural_annotation	UHGV-0016040_62	PF00216,MF_00381,NF001222,COG0776	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_64	PF06003,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_66	phrog_373	156.8	0	anti-repressor	transcription regulation
UniRef90	UHGV-0016040_66	UniRef90_UPI001CBC74BC	151.0	7.01994e-41	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0016040_66	748224.HMPREF9436_01449	155.0	7.00649e-44	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0016040_66	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0016040_66	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0016040_66	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0016040_66	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016040_67	UniRef90_UPI001106069C	72.4	9.7e-16	ribbon-helix-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0016040_67	478749.BRYFOR_07643	56.2	0.000000000445	N/A	N/A
Pfam	UHGV-0016040_67	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0016040_67	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
Pfam	UHGV-0016040_68	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
structural_annotation	UHGV-0016040_69	NF001604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_74	TIGR00663,COG0592	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016040_76	547042.BACCOPRO_02143	103.0	7.81e-24	N/A	N/A
Pfam	UHGV-0016040_78	PF18840	N/A	N/A	Large polyvalent protein associated domain 25	LPD25
COG	UHGV-0016040_78	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0016040_78	PF18840	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016040_81	UniRef90_A0A143HAG2	55.1	0.000000026	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0016040_81	742733.HMPREF9469_02677	53.1	0.0000000256	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0016040_81	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0016040_81	PF13560,TIGR03070,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0016040_84	PF07638	N/A	N/A	ECF sigma factor	Sigma70_ECF
structural_annotation	UHGV-0016040_84	PF19889,NF007224,COG1595	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_85	PF17516,NF037951	N/A	N/A	N/A	N/A
Pfam	UHGV-0016040_86	PF04297	N/A	N/A	Putative helix-turn-helix protein, YlxM / p13 like	UPF0122
COG	UHGV-0016040_86	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
KOfam	UHGV-0016040_87	K00390	54.2	3.3e-16	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0016040_87	phrog_424	129.2	3e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0016040_87	UniRef90_A0A1H7KWC5	311.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	N/A
eggNOG-mapper	UHGV-0016040_87	665956.HMPREF1032_00140	270.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0016040_87	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0016040_87	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0016040_87	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_91	phrog_3136	137.9	3.09995e-41	N/A	unknown function
UniRef90	UHGV-0016040_91	UniRef90_UPI001C26B029	171.0	0	ASCH domain-containing protein	N/A
structural_annotation	UHGV-0016040_91	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_92	phrog_38832	41.4	2.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0016040_92	665956.HMPREF1032_00143	68.6	0.00000000000341	N/A	N/A
structural_annotation	UHGV-0016040_92	PF10781	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_93	PF18300,MF_01549	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_95	phrog_5781	86.0	4.6e-25	N/A	unknown function
UniRef90	UHGV-0016040_95	UniRef90_A0A2V2FSM6	109.0	1.08e-28	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0016040_95	40631.O64365_BPN15	91.7	2.21e-22	N/A	N/A
Pfam	UHGV-0016040_95	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0016040_95	PF14359,MF_03036,NF007783,COG3613	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016040_97	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0016040_99	phrog_22529	41.7	0.000000000012	N/A	unknown function
UniRef90	UHGV-0016040_99	UniRef90_A0A8D9UGZ3	145.0	3.20001e-41	3D containing protein	N/A
eggNOG-mapper	UHGV-0016040_99	1226322.HMPREF1545_00012	67.4	0.0000000000407	3D domain	N/A
Pfam	UHGV-0016040_99	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0016040_99	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0016040_99	PF06725,NF040675,COG3584	N/A	N/A	N/A	N/A
KOfam	UHGV-0016040_100	K19304	74.6	1.7e-21	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0016040_100	phrog_6700	57.7	4.7e-17	endolysin	lysis
UniRef90	UHGV-0016040_100	UniRef90_A0A350TIL5	334.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0016040_100	1519439.JPJG01000040_gene1424	166.0	0	Peptidase family M23	N/A
Pfam	UHGV-0016040_100	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0016040_100	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A