UHGV-0016107 (vOTU-161021)

Viral Genome: UHGV-0016107

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0016107
vOTU ID	vOTU-161021
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_17_1727__NODE_3754_length_34434_cov_74.374945
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.37 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.978
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.52
Jumbo phage	No

Genome content
Genome length (bp)	34,434
GC content	53.73%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	91%
Average CDS length (bps)	589.19
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0016107_2	K15352	57.8	1e-16	pipB2; secreted effector protein PipB2	N/A
PHROG	UHGV-0016107_2	phrog_9562	85.6	5.6e-26	N/A	unknown function
UniRef90	UHGV-0016107_2	UniRef90_A0A3D2DZZ6	177.0	0	Pentapeptide repeat-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0016107_2	1226322.HMPREF1545_00011	122.0	4.68e-32	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-0016107_2	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-0016107_2	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-0016107_2	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016107_2	PF19062,PF13599	N/A	N/A	N/A	N/A
KOfam	UHGV-0016107_3	K22299	47.0	0.00000000000049	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0016107_3	phrog_8	58.5	1.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016107_3	UniRef90_A0A316QM82	63.2	0.0000000000544	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0016107_3	1121324.CLIT_8c01070	57.4	0.0000000049	transcriptional regulator, XRE family	N/A
PADLOC	UHGV-0016107_3	retron_type_VI_hth_cluster2_1	42.5	0.00000000000065	N/A	Retron
Pfam	UHGV-0016107_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016107_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0016107_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0016107_4	K22299	59.3	8.9e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0016107_4	phrog_8	55.4	0.0000000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016107_4	UniRef90_F3ZVU8	70.9	0.00000000000039	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0016107_4	2325.TKV_c21810	71.2	0.0000000000000464	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0016107_4	retron_type_VI_hth_cluster2_1	40.7	0.000000000047	N/A	Retron
Pfam	UHGV-0016107_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016107_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0016107_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016107_5	515620.EUBELI_20210	52.0	0.00000337	Psort-B Cytoplasmic, score 8.87	N/A
Pfam	UHGV-0016107_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016107_5	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0016107_5	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0016107_7	K14059	125.7	5.6e-37	int; integrase	N/A
PHROG	UHGV-0016107_7	phrog_1	128.0	7.9e-38	integrase	integration and excision
UniRef90	UHGV-0016107_7	UniRef90_A0A412L7T7	225.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0016107_7	1540257.JQMW01000011_gene2033	194.0	0	Phage integrase family	N/A
Pfam	UHGV-0016107_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0016107_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0016107_7	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0016107_8	K19304	85.3	8.8e-25	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0016107_8	phrog_10030	62.4	1.8e-18	tail length tape measure protein	tail
UniRef90	UHGV-0016107_8	UniRef90_UPI001E2E66D4	69.3	0.000000000886	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0016107_8	1087448.Eab7_0514	78.6	0.000000000000194	Peptidase, M23	N/A
Pfam	UHGV-0016107_8	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0016107_8	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-0016107_11	phrog_4105	60.3	2.8e-17	N/A	unknown function
PHROG	UHGV-0016107_12	phrog_372	202.3	0	tail protein	tail
UniRef90	UHGV-0016107_12	UniRef90_UPI001373A0FD	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-0016107_12	445971.ANASTE_00089	110.0	2.45e-22	N/A	N/A
Pfam	UHGV-0016107_12	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0016107_12	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0016107_12	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0016107_13	phrog_6616	115.8	8e-36	tail protein	tail
UniRef90	UHGV-0016107_13	UniRef90_A0A143YYZ5	130.0	3.07e-28	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0016107_13	469596.HMPREF9488_01318	246.0	0	N/A	N/A
structural_annotation	UHGV-0016107_13	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0016107_14	phrog_1194	113.7	7.9e-34	N/A	unknown function
UniRef90	UHGV-0016107_14	UniRef90_A0A0B3VTI7	91.7	1.93e-21	N/A	N/A
eggNOG-mapper	UHGV-0016107_14	1121333.JMLH01000047_gene1008	112.0	2.55e-30	N/A	N/A
Pfam	UHGV-0016107_14	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0016107_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0016107_15	phrog_1535	51.8	0.0000000000000065	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0016107_15	1232453.BAIF02000058_gene1637	64.7	0.000000129	phage tail tape measure protein	N/A
COG	UHGV-0016107_15	COG5412	N/A	N/A	Phage-related protein	N/A
eggNOG-mapper	UHGV-0016107_16	1121333.JMLH01000047_gene1011	57.0	0.00000000976	N/A	N/A
Pfam	UHGV-0016107_17	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0016107_17	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016107_18	469596.HMPREF9488_01310	132.0	3.88e-37	N/A	N/A
structural_annotation	UHGV-0016107_18	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016107_20	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016107_21	PF17395,TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016107_22	1298920.KI911353_gene2656	78.2	8.73e-17	N/A	N/A
UniRef90	UHGV-0016107_23	UniRef90_D7GNV9	84.0	6.68e-19	Phage QLRG family, putative DNA packaging	N/A
eggNOG-mapper	UHGV-0016107_23	1298920.KI911353_gene2658	58.9	0.000000000738	N/A	N/A
Pfam	UHGV-0016107_23	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0016107_23	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0016107_24	phrog_422	272.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0016107_24	645991.Sgly_0340	233.0	0	N/A	N/A
structural_annotation	UHGV-0016107_24	PF19821,MF_04119,TIGR04387,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-0016107_26	phrog_859	51.9	0.0000000000000079	portal protein	head and packaging
UniRef90	UHGV-0016107_26	UniRef90_A0A414B033	126.0	3.83e-33	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0016107_26	1123263.AUKY01000015_gene1610	102.0	1.38e-24	cell adhesion	N/A
Pfam	UHGV-0016107_26	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0016107_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016107_26	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0016107_28	phrog_64	139.5	1.79997e-41	portal protein	head and packaging
UniRef90	UHGV-0016107_28	UniRef90_A0A3D3Y472	295.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0016107_28	1121866.AUGK01000003_gene1429	285.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0016107_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0016107_28	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0016107_29	phrog_38	198.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0016107_29	UniRef90_A0A810QA10	505.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0016107_29	1298920.KI911353_gene2682	397.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0016107_29	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0016107_29	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0016107_29	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016107_29	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-0016107_34	K03466	129.6	2.1e-38	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-0016107_34	phrog_1358	128.5	2.4e-38	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0016107_34	UniRef90_A0A1C5UE43	122.0	1.55e-30	Stage III sporulation protein E	N/A
eggNOG-mapper	UHGV-0016107_34	1074889.MADAR_060	99.0	5.89e-21	4TM region of DNA translocase FtsK/SpoIIIE	N/A
PADLOC	UHGV-0016107_34	SspH_00004	57.6	1.1e-16	SspH	SSP
Pfam	UHGV-0016107_34	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-0016107_34	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-0016107_34	PF01580,MF_00350,TIGR03925,COG0433	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016107_35	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0016107_38	phrog_236	115.5	8.4e-34	nucleotide kinase	other
UniRef90	UHGV-0016107_38	UniRef90_UPI001F2B3BB8	127.0	6.02e-36	N/A	N/A
eggNOG-mapper	UHGV-0016107_38	1111454.HMPREF1250_1038	119.0	1.44e-33	N/A	N/A
Pfam	UHGV-0016107_38	PF11753	N/A	N/A	N/A	DUF3310
UniRef90	UHGV-0016107_40	UniRef90_A0A349HSI2	269.0	0	HintN domain-containing protein (Fragment)	N/A
Pfam	UHGV-0016107_40	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0016107_40	COG1311	N/A	N/A	Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B	N/A
structural_annotation	UHGV-0016107_40	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
KOfam	UHGV-0016107_41	K03111	113.9	2.2e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0016107_41	phrog_44	115.2	6.7e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016107_41	UniRef90_A0A1Y3ZMH7	109.0	4.54e-28	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0016107_41	411467.BACCAP_02389	100.0	8.43e-25	Single-strand binding protein family	N/A
Pfam	UHGV-0016107_41	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0016107_41	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0016107_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0016107_41	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0016107_41	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0016107_46	phrog_757	216.1	0	DNA methyltransferase	other
UniRef90	UHGV-0016107_46	UniRef90_A0A3E2U1Y9	214.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0016107_46	1235790.C805_00032	213.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0016107_46	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0016107_46	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016107_49	UniRef90_A0A098GES5	82.8	9.9e-19	Putative phage associated protein	N/A
structural_annotation	UHGV-0016107_49	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
KOfam	UHGV-0016107_50	K01160	65.3	1.6e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0016107_50	phrog_34	58.0	1.9e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016107_50	UniRef90_UPI00067452D7	97.8	2.16e-23	RusA family crossover junction endodeoxyribonuclease	N/A
COG	UHGV-0016107_50	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0016107_50	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016107_51	1499683.CCFF01000013_gene501	56.2	0.00000292	phage replisome	N/A
KOfam	UHGV-0016107_52	K00571	105.9	4.6e-31	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0016107_52	phrog_67	93.3	1.2e-27	DNA methyltransferase	other
UniRef90	UHGV-0016107_52	UniRef90_A0A2U1CFM2	406.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0016107_52	411468.CLOSCI_00299	352.0	0	DNA methylase	N/A
PADLOC	UHGV-0016107_52	MTase_II_00157	84.3	1.7e-24	Type II methyltransferase	RM
Pfam	UHGV-0016107_52	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0016107_52	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0016107_52	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016107_53	UniRef90_B0PAM4	125.0	1.03e-32	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0016107_53	1238184.CM001792_gene2549	56.2	0.000000333	N/A	N/A
Pfam	UHGV-0016107_53	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-0016107_53	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A