UHGV-0016110 (vOTU-077949)

Viral Genome: UHGV-0016110

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0016110
vOTU ID	vOTU-077949
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_17_1727__NODE_3737_length_34572_cov_7.009103
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9776
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.53
Jumbo phage	No

Genome content
Genome length (bp)	34,572
GC content	56.58%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	93%
Average CDS length (bps)	583.91
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0016110_3	phrog_199	68.8	5.7e-20	holin	lysis
UniRef90	UHGV-0016110_3	UniRef90_A0A3C0NPD5	182.0	0	Holin	N/A
eggNOG-mapper	UHGV-0016110_3	742738.HMPREF9460_01388	147.0	2.56438e-43	Bacteriophage holin family	N/A
Pfam	UHGV-0016110_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0016110_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0016110_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0016110_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_4	phrog_14030	162.6	0	N/A	unknown function
UniRef90	UHGV-0016110_4	UniRef90_A0A1Y4F0G2	193.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0016110_4	1321782.HMPREF1986_02283	194.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0016110_4	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0016110_4	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0016110_4	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0016110_4	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016110_5	1232449.BAHV02000010_gene2734	61.2	0.000000000736	N/A	N/A
structural_annotation	UHGV-0016110_7	PF21582,NF038128	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_8	phrog_19280	49.1	0.000000000000058	N/A	unknown function
eggNOG-mapper	UHGV-0016110_8	1160721.RBI_I01572	56.2	0.00000426	N/A	N/A
structural_annotation	UHGV-0016110_8	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_11	phrog_18110	195.1	0	N/A	unknown function
UniRef90	UHGV-0016110_11	UniRef90_A0A2V2F7V1	448.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0016110_11	999413.HMPREF1094_00205	238.0	0	N/A	N/A
Pfam	UHGV-0016110_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0016110_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0016110_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0016110_11	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016110_12	UniRef90_R6N293	129.0	3.39e-33	Putative phage tail component domain protein	N/A
COG	UHGV-0016110_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0016110_12	PF20753,PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_13	phrog_6900	248.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0016110_13	536233.CLO_1577	303.0	0	tape measure	N/A
COG	UHGV-0016110_13	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0016110_13	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_14	phrog_706	90.2	1.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0016110_14	1246.JMEA01000006_gene49	55.8	0.000000273	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0016110_14	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0016110_15	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_16	phrog_820	92.7	2.1e-27	major tail protein	tail
UniRef90	UHGV-0016110_16	UniRef90_A0A3A6EPU8	239.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0016110_16	428125.CLOLEP_00178	107.0	3.11e-26	Belongs to the glycosyl hydrolase family 6	N/A
COG	UHGV-0016110_16	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016110_16	PF06199,PF18316,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_17	phrog_913	43.6	0.000000000004	minor head protein	head and packaging
structural_annotation	UHGV-0016110_17	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_18	phrog_556	66.9	2.5e-19	minor head protein	head and packaging
eggNOG-mapper	UHGV-0016110_18	1134413.ANNK01000120_gene2022	59.3	0.0000000012	Minor capsid protein	N/A
Pfam	UHGV-0016110_18	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0016110_18	PF11114,TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016110_19	UniRef90_UPI001D06E7F2	98.2	4.96e-24	minor capsid protein	N/A
structural_annotation	UHGV-0016110_19	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_20	phrog_541	88.7	4.8e-26	head-tail adaptor	connector
PHROG	UHGV-0016110_21	phrog_422	302.4	0	major head protein	head and packaging
UniRef90	UHGV-0016110_21	UniRef90_A0A316T938	390.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0016110_21	428125.CLOLEP_00183	419.0	0	COG NOG28280 non supervised orthologous group	N/A
structural_annotation	UHGV-0016110_21	PF19821,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016110_23	PF14530,MF_01441,NF009990,COG0783	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_25	phrog_581	273.2	0	minor head protein	head and packaging
UniRef90	UHGV-0016110_25	UniRef90_A7VTB0	332.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0016110_25	428125.CLOLEP_01802	332.0	0	N/A	N/A
Pfam	UHGV-0016110_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0016110_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016110_25	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_26	phrog_533	387.6	0	portal protein	head and packaging
UniRef90	UHGV-0016110_26	UniRef90_A7VTB1	640.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0016110_26	428125.CLOLEP_01803	640.0	0	N/A	N/A
Pfam	UHGV-0016110_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0016110_26	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0016110_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0016110_27	K06909	50.5	0.000000000000027	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0016110_27	phrog_29775	284.6	0	N/A	unknown function
UniRef90	UHGV-0016110_27	UniRef90_A0A316T8R1	561.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0016110_27	428125.CLOLEP_01804	556.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0016110_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0016110_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0016110_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0016110_27	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016110_28	UniRef90_UPI00141260EC	118.0	1.48e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0016110_28	1235790.C805_00037	102.0	7.74e-26	N/A	N/A
structural_annotation	UHGV-0016110_28	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_29	phrog_36	74.0	2.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016110_29	UniRef90_A0A7X8AI58	68.2	0.00000000000707	N/A	N/A
eggNOG-mapper	UHGV-0016110_29	1410624.JNKK01000051_gene2469	72.8	0.0000000000000181	sigma factor activity	N/A
Pfam	UHGV-0016110_29	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0016110_29	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0016110_29	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_30	phrog_374	51.3	0.000000000000023	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0016110_30	278197.PEPE_1706	57.8	0.000000034	N/A	N/A
PHROG	UHGV-0016110_32	phrog_3584	135.3	3.60001e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0016110_32	1203606.HMPREF1526_00985	71.6	0.00000000000786	N/A	N/A
structural_annotation	UHGV-0016110_32	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_34	phrog_599	49.2	0.00000000000011	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0016110_34	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0016110_34	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0016110_34	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
COG	UHGV-0016110_34	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-0016110_34	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_36	phrog_24518	90.3	1.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0016110_36	1519439.JPJG01000077_gene922	78.2	0.0000000000000048	N/A	N/A
PHROG	UHGV-0016110_37	phrog_15609	195.0	0	N/A	unknown function
UniRef90	UHGV-0016110_37	UniRef90_A0A7G9WGA3	121.0	4e-28	N/A	N/A
eggNOG-mapper	UHGV-0016110_37	1395513.P343_08065	108.0	1.88e-24	N/A	N/A
Pfam	UHGV-0016110_37	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0016110_37	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0016110_37	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_38	phrog_8470	250.1	0	N/A	unknown function
UniRef90	UHGV-0016110_38	UniRef90_UPI00195E492B	283.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0016110_38	1378168.N510_01842	292.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0016110_38	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0016110_38	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0016110_39	phrog_38338	73.0	4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0016110_39	693746.OBV_24020	98.6	5.11e-25	N/A	N/A
UniRef90	UHGV-0016110_46	UniRef90_A0A1Q6RKG1	130.0	2.16e-36	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0016110_46	411471.SUBVAR_05818	102.0	4.42e-26	sequence-specific DNA binding	N/A
Pfam	UHGV-0016110_46	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0016110_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0016110_46	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016110_48	411489.CLOL250_00906	63.2	0.0000000028	domain protein	N/A
COG	UHGV-0016110_48	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
PHROG	UHGV-0016110_50	phrog_1758	52.0	0.0000000000000032	acetyltransferase	other
UniRef90	UHGV-0016110_50	UniRef90_UPI000811D8FE	59.3	0.000000161	GNAT family N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0016110_50	1211112.ALJC01000075_gene3002	57.8	0.0000000685	-acetyltransferase	N/A
Pfam	UHGV-0016110_50	PF00583	N/A	N/A	Acetyltransferase (GNAT) family	Acetyltransf_1
COG	UHGV-0016110_50	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
UniRef90	UHGV-0016110_51	UniRef90_A0A8D9UHA6	74.7	0.000000000000254	Helix-turn-helix XRE-family like protein	N/A
COG	UHGV-0016110_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0016110_51	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016110_52	PF05973,TIGR02683,COG4683	N/A	N/A	N/A	N/A
KOfam	UHGV-0016110_53	K23779	47.0	0.00000000000053	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0016110_53	phrog_1373	44.9	0.0000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016110_53	UniRef90_UPI00051ABD2F	105.0	1.18e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0016110_53	1410625.JHWK01000002_gene391	63.2	0.0000000000349	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0016110_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016110_53	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0016110_54	PF11950,NF008958	N/A	N/A	N/A	N/A
KOfam	UHGV-0016110_55	K06400	340.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0016110_55	phrog_95	335.2	0	integrase	integration and excision
UniRef90	UHGV-0016110_55	UniRef90_A0A3A6JR24	373.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0016110_55	665956.HMPREF1032_03589	376.0	0	N/A	N/A
Pfam	UHGV-0016110_55	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0016110_55	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0016110_55	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0016110_55	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0016110_55	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A