UHGV-0016487 (vOTU-065902)

Viral Genome: UHGV-0016487

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0016487
vOTU ID	vOTU-065902
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_12_1819__NODE_1318_length_40105_cov_16.970696
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.91 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9824
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.39
Jumbo phage	No

Genome content
Genome length (bp)	40,105
GC content	59.03%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	96%
Average CDS length (bps)	786.37
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0016487_1	1235835.C814_03141	69.3	0.00000000000114	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0016487_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
COG	UHGV-0016487_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-0016487_3	phrog_1914	100.2	5.8e-30	N/A	unknown function
UniRef90	UHGV-0016487_3	UniRef90_R6DVV5	239.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0016487_3	1160721.RBI_I01604	145.0	1.15999e-41	N/A	N/A
Pfam	UHGV-0016487_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0016487_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0016487_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0016487_4	K22300	52.3	0.000000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0016487_4	phrog_2967	67.4	1.8e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016487_4	UniRef90_A0A354M9E0	69.7	0.00000000000196	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0016487_4	562982.HMPREF0432_00732	58.2	0.00000000533	sequence-specific DNA binding	N/A
Pfam	UHGV-0016487_4	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0016487_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0016487_5	K07729	45.4	0.0000000000016	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0016487_5	phrog_3	40.5	0.000000000096	transcriptional repressor	transcription regulation
UniRef90	UHGV-0016487_5	UniRef90_A0A7X9EDY6	68.6	0.0000000000000699	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0016487_5	482234.SCAZ3_00815	52.8	0.0000000352	sequence-specific DNA binding	N/A
Pfam	UHGV-0016487_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016487_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0016487_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016487_6	1131462.DCF50_p2449	55.5	0.00000286	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0016487_6	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0016487_6	COG5492	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016487_8	1235835.C814_03153	70.1	0.00000000000000428	N/A	N/A
structural_annotation	UHGV-0016487_8	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0016487_12	phrog_434	316.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016487_12	UniRef90_UPI000952E6A4	297.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0016487_12	1121344.JHZO01000003_gene985	283.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0016487_12	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0016487_12	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0016487_12	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0016487_12	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0016487_14	K07455	173.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0016487_14	phrog_148	166.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016487_14	UniRef90_A0A7X7Z0P1	323.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0016487_14	1591073.A0A0B5D0I3_9CAUD	188.0	0	DNA metabolic process	N/A
Pfam	UHGV-0016487_14	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0016487_14	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
structural_annotation	UHGV-0016487_14	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0016487_15	K03111	141.9	6.60012e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0016487_15	phrog_44	137.4	9.10003e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016487_15	UniRef90_A0A1W1YRF9	184.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0016487_15	1226322.HMPREF1545_04080	181.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0016487_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0016487_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0016487_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0016487_15	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0016487_15	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0016487_16	phrog_9474	122.4	3.9e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016487_16	UniRef90_A0A1I7FTR4	115.0	8.94e-27	DnaD and phage-associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0016487_16	644966.Tmar_0029	109.0	9.83e-25	HNH endonuclease	N/A
COG	UHGV-0016487_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0016487_19	K00390	44.0	8.2e-17	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0016487_19	phrog_424	92.4	1.9e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0016487_19	UniRef90_UPI001C108757	534.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0016487_19	397291.C804_00950	344.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0016487_19	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0016487_19	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0016487_19	PF01507,MF_00063,NF010367,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0016487_21	phrog_38832	46.8	0.00000000000043	N/A	unknown function
PHROG	UHGV-0016487_24	phrog_22543	42.0	0.000000000015	N/A	unknown function
PHROG	UHGV-0016487_26	phrog_474	113.2	3.6e-33	phosphofructokinase	other
UniRef90	UHGV-0016487_26	UniRef90_G9RWI8	115.0	5.7e-31	N/A	N/A
eggNOG-mapper	UHGV-0016487_26	665956.HMPREF1032_00639	115.0	9.56e-32	N/A	N/A
Pfam	UHGV-0016487_26	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0016487_26	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0016487_27	K01160	60.6	4e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0016487_27	phrog_1682	78.6	8.2e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016487_27	UniRef90_A0A174WGH7	130.0	5.03e-36	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0016487_27	1235790.C805_00029	128.0	1.28e-36	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0016487_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0016487_27	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0016487_29	phrog_1206	44.1	0.00000000000061	terminase small subunit	head and packaging
KOfam	UHGV-0016487_30	K06909	119.1	4.1e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0016487_30	phrog_979	118.1	1.2e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0016487_30	UniRef90_A0A810Q5R0	620.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0016487_30	1410650.JHWL01000003_gene2834	562.0	0	N/A	N/A
Pfam	UHGV-0016487_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0016487_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0016487_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0016487_31	phrog_156	296.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0016487_31	1410650.JHWL01000003_gene2833	520.0	0	N/A	N/A
structural_annotation	UHGV-0016487_31	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0016487_32	K07584	44.1	0.0000000000032	N/A	N/A
PHROG	UHGV-0016487_32	phrog_4478	55.3	7.2e-16	peptidase	other
UniRef90	UHGV-0016487_32	UniRef90_UPI001A8F44BB	55.5	0.000000104	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0016487_32	521098.Aaci_1816	55.8	0.0000000124	Cysteine protease Prp	N/A
Pfam	UHGV-0016487_32	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0016487_32	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016487_32	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0016487_33	phrog_13908	195.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0016487_33	1410650.JHWL01000003_gene2831	119.0	2.69e-28	N/A	N/A
PHROG	UHGV-0016487_34	phrog_1357	217.6	0	major head protein	head and packaging
UniRef90	UHGV-0016487_34	UniRef90_A0A2V2CFL5	590.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0016487_34	1410650.JHWL01000003_gene2830	272.0	0	N/A	N/A
NCBIFam	UHGV-0016487_34	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0016487_34	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0016487_35	phrog_15239	46.1	0.00000000000067	N/A	unknown function
PHROG	UHGV-0016487_36	phrog_12105	130.4	7.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-0016487_36	1226322.HMPREF1545_03850	88.2	8.54e-21	N/A	N/A
PHROG	UHGV-0016487_37	phrog_511	168.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0016487_37	1410650.JHWL01000003_gene2827	265.0	0	N/A	N/A
structural_annotation	UHGV-0016487_37	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0016487_39	phrog_38190	65.7	4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0016487_39	411473.RUMCAL_00420	72.4	0.0000000000337	nuclear chromosome segregation	N/A
COG	UHGV-0016487_39	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-0016487_41	1410650.JHWL01000003_gene2815	101.0	1.79e-20	N/A	N/A
PHROG	UHGV-0016487_42	phrog_22978	736.8	0	N/A	unknown function
UniRef90	UHGV-0016487_42	UniRef90_R5G452	387.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0016487_42	1410650.JHWL01000003_gene2814	363.0	0	N/A	N/A
Pfam	UHGV-0016487_42	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-0016487_43	phrog_15594	90.3	1.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0016487_43	1118055.CAGU01000013_gene763	54.7	0.0000000226	N/A	N/A
structural_annotation	UHGV-0016487_43	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0016487_44	phrog_31538	52.0	0.000000000000014	N/A	unknown function
PHROG	UHGV-0016487_45	phrog_13589	197.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0016487_45	742733.HMPREF9469_05009	232.0	0	N/A	N/A
KOfam	UHGV-0016487_46	K03651	60.9	2.1e-17	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-0016487_46	phrog_7158	108.4	5.2e-32	N/A	unknown function
UniRef90	UHGV-0016487_46	UniRef90_A0A1E8F0N5	123.0	5.81e-27	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	N/A
eggNOG-mapper	UHGV-0016487_46	862514.HMPREF0623_0302	72.4	0.000000000183	Calcineurin-like phosphoesterase	N/A
Pfam	UHGV-0016487_46	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
structural_annotation	UHGV-0016487_46	PF14582,MF_00905,NF008359,COG2129	N/A	N/A	N/A	N/A
KOfam	UHGV-0016487_47	K01447	80.0	3.8e-23	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0016487_47	phrog_5182	143.0	3.00018e-42	endolysin	lysis
UniRef90	UHGV-0016487_47	UniRef90_R5AZE6	274.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0016487_47	397288.C806_00777	210.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0016487_47	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0016487_47	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0016487_47	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0016487_47	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0016487_48	phrog_1863	62.3	1.6e-18	N/A	unknown function
UniRef90	UHGV-0016487_48	UniRef90_UPI001F223E8B	68.6	0.000000000000232	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0016487_48	1226322.HMPREF1545_04027	68.2	0.0000000000000539	N/A	N/A
PHROG	UHGV-0016487_49	phrog_1129	61.1	1.3e-17	holin	lysis
UniRef90	UHGV-0016487_49	UniRef90_A0A8J6J3M3	101.0	2.89e-26	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0016487_49	742740.HMPREF9474_03522	99.8	2.02e-26	N/A	N/A
Pfam	UHGV-0016487_49	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0016487_49	PF06946	N/A	N/A	N/A	N/A