UHGV-0016600 (vOTU-151105)

Viral Genome: UHGV-0016600

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0016600
vOTU ID	vOTU-151105
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_14_1852__NODE_1241_length_32086_cov_37.060608
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.69 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9777
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.9
Jumbo phage	No

Genome content
Genome length (bp)	32,086
GC content	47.75%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	85%
Average CDS length (bps)	461.39
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0016600_1	phrog_27471	48.7	0.000000000000087	N/A	unknown function
eggNOG-mapper	UHGV-0016600_1	797515.HMPREF9103_02430	58.9	0.000000000707	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0016600_1	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0016600_2	phrog_374	57.8	1.2e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016600_2	UniRef90_A0A7S5R1H6	153.0	2.10195e-44	HNH endonuclease protein	N/A
eggNOG-mapper	UHGV-0016600_2	411462.DORLON_00791	70.1	0.00000000000296	N/A	N/A
PHROG	UHGV-0016600_3	phrog_35094	93.4	2.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0016600_3	457424.BFAG_02409	117.0	1.55e-33	N/A	N/A
PHROG	UHGV-0016600_5	phrog_843	61.3	9.4e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016600_5	UniRef90_UPI001159D907	115.0	2.29e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0016600_5	929506.CbC4_1203	109.0	1.23e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-0016600_5	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0016600_10	phrog_4068	41.8	0.000000000024	N/A	unknown function
structural_annotation	UHGV-0016600_10	PF06657	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016600_11	PF09723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016600_14	MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016600_16	PF16677	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016600_24	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-0016600_26	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0016600_26	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-0016600_28	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0016600_28	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-0016600_29	phrog_15768	131.5	6.89999e-40	N/A	unknown function
UniRef90	UHGV-0016600_29	UniRef90_R5GGJ0	98.6	6.82e-22	N/A	N/A
eggNOG-mapper	UHGV-0016600_29	521003.COLINT_02320	105.0	1.95e-25	N/A	N/A
Pfam	UHGV-0016600_29	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0016600_29	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0016600_30	K02314	207.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0016600_30	phrog_19	213.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016600_30	UniRef90_UPI001CBC4B63	427.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0016600_30	1203606.HMPREF1526_01325	162.0	2.20985e-42	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0016600_30	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0016600_30	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0016600_30	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0016600_32	phrog_186	49.8	0.00000000000005	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016600_32	UniRef90_B0NH38	94.7	1.04e-19	Replication initiator protein A domain protein	N/A
eggNOG-mapper	UHGV-0016600_32	411468.CLOSCI_02792	94.7	1.75e-20	Replication initiator protein A (RepA) N-terminus	N/A
Pfam	UHGV-0016600_32	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0016600_32	COG1349	N/A	N/A	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	N/A
structural_annotation	UHGV-0016600_32	PF06970,MF_01177,NF040642,COG5625	N/A	N/A	N/A	N/A
PHROG	UHGV-0016600_36	phrog_14275	44.4	0.0000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0016600_36	1280676.AUJO01000001_gene2313	65.9	0.00000000236	N/A	N/A
eggNOG-mapper	UHGV-0016600_37	1121296.JONJ01000014_gene308	156.0	2.20985e-42	N/A	N/A
structural_annotation	UHGV-0016600_37	PF07718,PF02883,NF007398,COG3121	N/A	N/A	N/A	N/A
KOfam	UHGV-0016600_38	K07741	84.0	4e-24	antB; anti-repressor protein	N/A
PHROG	UHGV-0016600_38	phrog_373	95.9	4.5e-28	anti-repressor	transcription regulation
UniRef90	UHGV-0016600_38	UniRef90_A0A4Z0Y6Y0	171.0	0	AntA/AntB antirepressor	N/A
eggNOG-mapper	UHGV-0016600_38	903814.ELI_3141	130.0	9.57e-34	AntA/AntB antirepressor	N/A
Pfam	UHGV-0016600_38	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-0016600_38	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0016600_38	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016600_39	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016600_41	UniRef90_A0A417DZ16	60.1	0.000000000239	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0016600_41	PF13744	N/A	N/A	Helix-turn-helix domain	HTH_37
structural_annotation	UHGV-0016600_41	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0016600_42	K14060	127.5	1.3e-37	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0016600_42	phrog_125	155.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016600_42	UniRef90_A0A3D0LYX8	211.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0016600_42	1410633.JHWR01000012_gene95	193.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0016600_42	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0016600_42	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0016600_42	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016600_44	PF09202,MF_01177,TIGR02702,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0016600_45	phrog_38	186.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0016600_45	UniRef90_A0A810QA10	489.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0016600_45	1298920.KI911353_gene2682	344.0	0	TIGRFAM Phage	N/A
COG	UHGV-0016600_45	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016600_45	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0016600_47	phrog_64	152.2	2.8026e-45	portal protein	head and packaging
UniRef90	UHGV-0016600_47	UniRef90_A0A371ILT4	323.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0016600_47	1121866.AUGK01000003_gene1429	268.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0016600_47	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0016600_47	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016600_48	1064535.MELS_1945	78.2	2.45e-18	N/A	N/A
dbAPIS	UHGV-0016600_48	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
PHROG	UHGV-0016600_51	phrog_29	173.2	0	major head protein	head and packaging
UniRef90	UHGV-0016600_51	UniRef90_A0A2Z4QBB4	347.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0016600_51	476272.RUMHYD_01946	244.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0016600_51	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0016600_51	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016600_52	UniRef90_R6N215	82.4	3.72e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-0016600_52	TIGR01560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016600_53	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016600_55	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0016600_56	phrog_158	43.3	0.0000000000056	major tail protein	tail
UniRef90	UHGV-0016600_56	UniRef90_UPI001D087591	114.0	7.09e-30	phage tail protein	N/A
eggNOG-mapper	UHGV-0016600_56	1449343.JQLQ01000002_gene1514	57.0	0.0000000389	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0016600_56	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016600_57	1123263.AUKY01000015_gene1618	58.5	0.00000000153	N/A	N/A
Pfam	UHGV-0016600_57	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0016600_57	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016600_58	1121333.JMLH01000047_gene1011	79.7	3.6e-17	N/A	N/A
PHROG	UHGV-0016600_59	phrog_1535	136.6	1.70006e-41	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0016600_59	1121866.AUGK01000003_gene1437	221.0	0	phage tail tape measure protein	N/A
COG	UHGV-0016600_59	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0016600_59	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A