UHGV-0017098 (vOTU-158228)

Viral Genome: UHGV-0017098

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0017098
vOTU ID	vOTU-158228
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_O_4_1196__NODE_2673_length_37170_cov_14.623918
Associated BioSample	SAMEA4765655
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.1 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9823
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.07
Jumbo phage	No

Genome content
Genome length (bp)	37,170
GC content	53.62%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	96%
Average CDS length (bps)	577.26
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0017098_1	K02536	43.3	2.8e-39	lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]	N/A
PHROG	UHGV-0017098_1	phrog_5353	51.7	4.2e-23	N/A	unknown function
Pfam	UHGV-0017098_1	PF00132	N/A	N/A	Bacterial transferase hexapeptide (six repeats)	Hexapep
PHROG	UHGV-0017098_2	phrog_25567	85.7	3.1e-25	N/A	unknown function
UniRef90	UHGV-0017098_2	UniRef90_A0A0K9N6V9	68.6	0.00000000000315	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-0017098_2	411469.EUBHAL_00738	69.7	0.000000000000128	N/A	N/A
AcrCatalog	UHGV-0017098_4	cluster_29173	56.6	0.0000000000001	NA	N/A
UniRef90	UHGV-0017098_5	UniRef90_A0A843IZ65	55.8	0.0000000111	Sigma70_r4 domain-containing protein	N/A
PHROG	UHGV-0017098_6	phrog_6918	66.6	3e-19	holin	lysis
UniRef90	UHGV-0017098_6	UniRef90_U2S4Z6	55.8	0.0000000707	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-0017098_6	1226322.HMPREF1545_03575	55.8	0.0000000119	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0017098_6	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0017098_6	PF09682,TIGR01673	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017098_8	1235797.C816_02840	77.8	3.15e-17	N/A	N/A
KOfam	UHGV-0017098_9	K06381	170.1	0	spoIID; stage II sporulation protein D	N/A
PHROG	UHGV-0017098_9	phrog_894	52.2	0.0000000000000072	endolysin	lysis
UniRef90	UHGV-0017098_9	UniRef90_A0A7C3GNE4	109.0	4.42e-23	SpoIID/LytB domain-containing protein	N/A
eggNOG-mapper	UHGV-0017098_9	1121472.AQWN01000009_gene331	107.0	1.21e-22	SpoIID LytB domain protein	N/A
Pfam	UHGV-0017098_9	PF08486	N/A	N/A	Stage II sporulation protein	SpoIID
Pfam	UHGV-0017098_9	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-0017098_9	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
NCBIFam	UHGV-0017098_9	TIGR02669.1	N/A	N/A	SpoIID/LytB domain-containing protein	N/A
COG	UHGV-0017098_9	COG2385	N/A	N/A	Peptidoglycan hydrolase (amidase) enhancer domain SpoIID	N/A
structural_annotation	UHGV-0017098_9	PF08486,PF01471,TIGR02669,TIGR02869,COG2385,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_10	phrog_18593	69.5	4e-20	N/A	unknown function
UniRef90	UHGV-0017098_10	UniRef90_A0A1C6AVU9	159.0	0	Carbohydrate binding domain	N/A
eggNOG-mapper	UHGV-0017098_10	1226322.HMPREF1545_04028	152.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0017098_10	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0017098_10	PF14600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017098_13	189425.PGRAT_19250	93.6	7.77e-18	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0017098_13	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0017098_14	phrog_4311	565.0	0	minor head protein	head and packaging
UniRef90	UHGV-0017098_14	UniRef90_R5IIT2	489.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0017098_14	1033744.CAEL01000029_gene1269	334.0	0	N/A	N/A
Pfam	UHGV-0017098_14	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0017098_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0017098_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0017098_14	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0017098_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_16	phrog_240	78.2	1.7e-35	head protein	head and packaging
eggNOG-mapper	UHGV-0017098_16	1430331.EP10_10445	89.0	1.84e-19	Belongs to the glycosyl hydrolase 8 (cellulase D) family	N/A
COG	UHGV-0017098_16	COG3405	N/A	N/A	Endo-1,4-beta-D-glucanase Y	N/A
structural_annotation	UHGV-0017098_16	PF12571	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_17	phrog_33	60.7	3.5e-17	distal tail protein Dit	tail
UniRef90	UHGV-0017098_17	UniRef90_A0A1W1UYY4	122.0	7.12e-32	Phage tail protein	N/A
Pfam	UHGV-0017098_17	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0017098_17	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0017098_17	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0017098_17	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_18	phrog_6900	238.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0017098_18	1123309.AQYB01000018_gene819	305.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0017098_18	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0017098_18	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_21	phrog_885	80.5	1.7e-23	major tail protein	tail
UniRef90	UHGV-0017098_21	UniRef90_A0A843J9F0	219.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0017098_21	1504822.CCNO01000012_gene492	252.0	0	N/A	N/A
structural_annotation	UHGV-0017098_21	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_22	phrog_17405	47.7	0.00000000000023	head protein	head and packaging
UniRef90	UHGV-0017098_22	UniRef90_A0A415JI88	118.0	4.65e-32	N/A	N/A
structural_annotation	UHGV-0017098_22	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_23	phrog_17977	66.7	2.4e-19	N/A	unknown function
UniRef90	UHGV-0017098_23	UniRef90_A0A285PT57	102.0	7.79e-26	Phage head-tail joining protein	N/A
structural_annotation	UHGV-0017098_23	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_25	phrog_544	170.0	0	major head protein	head and packaging
UniRef90	UHGV-0017098_25	UniRef90_A0A810PZM2	639.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0017098_25	1347392.CCEZ01000005_gene1236	271.0	0	N/A	N/A
Pfam	UHGV-0017098_25	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0017098_25	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017098_26	UniRef90_A0A6B9SU02	105.0	8.63e-25	Fibronectin autolysin	N/A
structural_annotation	UHGV-0017098_26	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_27	phrog_5	81.1	1.5e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-0017098_27	UniRef90_A0A3A9EIF3	179.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0017098_27	1280685.AUKC01000004_gene1630	104.0	5.19e-27	N/A	N/A
Pfam	UHGV-0017098_27	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0017098_27	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0017098_27	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_30	phrog_115	120.0	1e-35	minor head protein	head and packaging
UniRef90	UHGV-0017098_30	UniRef90_A0A3D3Y165	496.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0017098_30	1504822.CCNO01000013_gene286	199.0	0	cell adhesion	N/A
Pfam	UHGV-0017098_30	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0017098_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017098_30	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_31	phrog_64	168.4	0	portal protein	head and packaging
UniRef90	UHGV-0017098_31	UniRef90_UPI0018A8A301	618.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0017098_31	673376.F2VHW1_9CAUD	214.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0017098_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0017098_31	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0017098_32	K06909	133.5	1.7e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0017098_32	phrog_10250	175.8	0	N/A	unknown function
UniRef90	UHGV-0017098_32	UniRef90_A0A3D3Y0N9	622.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0017098_32	1226322.HMPREF1545_00043	533.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0017098_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0017098_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0017098_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0017098_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_34	phrog_842	231.0	0	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UniRef90	UHGV-0017098_34	UniRef90_A0A516LJ12	258.0	0	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	N/A
eggNOG-mapper	UHGV-0017098_34	508419.F8J156_9CAUD	220.0	0	N/A	N/A
Pfam	UHGV-0017098_34	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
structural_annotation	UHGV-0017098_34	PF20691,NF041865,COG1216	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017098_35	1399942.U3PCR3_9CAUD	49.3	0.00000138	helicase activity	N/A
KOfam	UHGV-0017098_36	K03497	54.7	0.0000000000000024	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0017098_36	phrog_620	138.1	3.69999e-41	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017098_36	UniRef90_A0A810PZK9	176.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0017098_36	411459.RUMOBE_01044	173.0	0	N/A	N/A
PADLOC	UHGV-0017098_36	MTase_II_00015	93.0	4.8e-27	Type II methyltransferase	RM
Pfam	UHGV-0017098_36	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0017098_36	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0017098_36	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_37	phrog_36	44.5	0.0000000000027	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0017098_37	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_38	phrog_6721	274.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0017098_38	537007.BLAHAN_05521	264.0	0	N/A	N/A
structural_annotation	UHGV-0017098_38	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_40	phrog_13321	78.6	5.5e-23	N/A	unknown function
UniRef90	UHGV-0017098_40	UniRef90_A0A1I3I4Y8	420.0	0	DNA repair photolyase	N/A
eggNOG-mapper	UHGV-0017098_40	573061.Clocel_2653	397.0	0	DNA photolyase activity	N/A
Pfam	UHGV-0017098_40	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-0017098_40	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-0017098_40	PF20903,MF_00917,NF033668,COG4422	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_42	phrog_20532	52.1	0.0000000000000069	N/A	unknown function
Pfam	UHGV-0017098_42	PF00132	N/A	N/A	Bacterial transferase hexapeptide (six repeats)	Hexapep
COG	UHGV-0017098_42	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0017098_42	MF_00387,TIGR03992,COG2171	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_45	phrog_355	60.9	1.6e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017098_45	UniRef90_UPI001C3DAE12	104.0	5.87e-27	N/A	N/A
eggNOG-mapper	UHGV-0017098_45	97138.C820_00250	99.8	6.56e-26	N/A	N/A
Pfam	UHGV-0017098_45	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0017098_45	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0017098_47	K01160	41.6	0.00000000003	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0017098_47	phrog_1682	78.3	1.1e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017098_47	UniRef90_U2Q8K8	138.0	9.13001e-40	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0017098_47	1226322.HMPREF1545_04070	138.0	1.52999e-40	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0017098_47	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0017098_47	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_48	phrog_9474	107.3	1.4e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017098_48	UniRef90_A0A1F8UZU6	85.1	0.00000000000000131	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0017098_48	411483.FAEPRAA2165_01877	74.3	0.00000000000145	HNH endonuclease	N/A
COG	UHGV-0017098_48	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0017098_48	PF09681,PF07261,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0017098_49	K07455	176.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0017098_49	phrog_148	174.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017098_49	UniRef90_A0A354AUE2	366.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0017098_49	272626.lin0085	209.0	0	Recombinational DNA repair protein (RecE pathway)	N/A
Pfam	UHGV-0017098_49	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0017098_49	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0017098_49	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0017098_49	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_50	phrog_434	261.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017098_50	UniRef90_A0A7I8D1X6	315.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0017098_50	428125.CLOLEP_01823	306.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0017098_50	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0017098_50	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0017098_50	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0017098_50	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017098_51	945021.TEH_18470	49.3	0.00000948	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0017098_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0017098_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-0017098_53	PF02954	N/A	N/A	Bacterial regulatory protein, Fis family	HTH_8
KOfam	UHGV-0017098_57	K18830	64.1	2.8e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0017098_57	phrog_8	53.3	0.0000000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017098_57	UniRef90_A0A6N7WRP8	130.0	8.22e-37	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0017098_57	445972.ANACOL_03315	118.0	9.75e-33	N/A	N/A
Pfam	UHGV-0017098_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0017098_57	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0017098_57	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0017098_59	phrog_8	40.9	0.000000000029	transcriptional regulator	transcription regulation
Pfam	UHGV-0017098_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0017098_60	K14059	218.6	0	int; integrase	N/A
PHROG	UHGV-0017098_60	phrog_1	203.3	0	integrase	integration and excision
UniRef90	UHGV-0017098_60	UniRef90_A0A7I8D1X3	369.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0017098_60	1203606.HMPREF1526_02099	293.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0017098_60	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0017098_60	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0017098_60	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0017098_60	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A