UHGV-0017264 (vOTU-042947)

Viral Genome: UHGV-0017264

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0017264
vOTU ID	vOTU-042947
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_M_8_1180__NODE_1206_length_41721_cov_26.521684
Associated BioSample	SAMEA4765639
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.977
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.87
Jumbo phage	No

Genome content
Genome length (bp)	41,644
GC content	40.60%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	92%
Average CDS length (bps)	661.19
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0017264_1	phrog_19556	97.5	1.4e-28	tail fiber protein; host specificity	tail
UniRef90	UHGV-0017264_1	UniRef90_A0A352BLY8	407.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0017264_1	272623.L77514	138.0	1.22e-30	N/A	N/A
Pfam	UHGV-0017264_1	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-0017264_2	phrog_11105	52.0	0.00000000000001	N/A	unknown function
PHROG	UHGV-0017264_3	phrog_16164	130.7	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0017264_3	33035.JPJF01000093_gene2236	57.4	0.000000264	N/A	N/A
structural_annotation	UHGV-0017264_3	PF10651,NF032891	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017264_4	UniRef90_UPI001D075611	314.0	0	GDSL-type esterase/lipase family protein	N/A
PHROG	UHGV-0017264_6	phrog_4105	87.0	1.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0017264_6	411459.RUMOBE_00911	178.0	0	N/A	N/A
PHROG	UHGV-0017264_7	phrog_443	66.4	6.6e-19	holin	lysis
UniRef90	UHGV-0017264_7	UniRef90_UPI000E5CA950	122.0	4.33e-35	holin	N/A
eggNOG-mapper	UHGV-0017264_7	626523.GCWU000342_01012	90.5	6.86e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0017264_7	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0017264_7	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0017264_8	K01447	96.2	4.5e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0017264_8	phrog_3088	178.4	0	amidase	lysis
UniRef90	UHGV-0017264_8	UniRef90_A0A414EG98	771.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0017264_8	411459.RUMOBE_00909	731.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0017264_8	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0017264_8	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0017264_8	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0017264_8	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0017264_8	PF01832,NF008758,NF009354,COG5632,COG4193	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_9	phrog_1760	107.5	9.8e-32	anti-termination protein	transcription regulation
UniRef90	UHGV-0017264_9	UniRef90_UPI001C0ED555	335.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-0017264_9	476272.RUMHYD_02879	224.0	0	ORF6N domain	N/A
Pfam	UHGV-0017264_9	PF10543	N/A	N/A	ORF6N domain	ORF6N
structural_annotation	UHGV-0017264_9	PF10543,PF13058,TIGR02681,COG3646,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0017264_10	K14059	171.9	0	int; integrase	N/A
PHROG	UHGV-0017264_10	phrog_1	152.3	2.8026e-45	integrase	integration and excision
UniRef90	UHGV-0017264_10	UniRef90_A0A173WTB3	669.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0017264_10	1304866.K413DRAFT_1180	396.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0017264_10	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0017264_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0017264_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0017264_10	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_11	phrog_1847	351.2	0	N/A	unknown function
UniRef90	UHGV-0017264_11	UniRef90_A0A1C5Z1C0	707.0	0	T5orf172 domain	N/A
eggNOG-mapper	UHGV-0017264_11	1256908.HMPREF0373_00641	484.0	0	T5orf172	N/A
Pfam	UHGV-0017264_11	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0017264_11	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0017264_11	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_12	phrog_87	70.3	2.3e-20	metallo-protease	other
UniRef90	UHGV-0017264_12	UniRef90_UPI001D07A9BA	245.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0017264_12	457412.RSAG_00798	237.0	0	Zn peptidase	N/A
COG	UHGV-0017264_12	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0017264_12	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017264_13	UniRef90_UPI00156E1BAC	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017264_13	457412.RSAG_01052	171.0	0	N/A	N/A
Pfam	UHGV-0017264_13	PF13711	N/A	N/A	N/A	DUF4160
eggNOG-mapper	UHGV-0017264_14	457412.RSAG_01053	187.0	0	N/A	N/A
KOfam	UHGV-0017264_15	K22299	42.2	0.000000000015	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0017264_15	UniRef90_UPI000E46C786	328.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0017264_15	883156.HMPREF9282_01207	86.7	4.05e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0017264_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0017264_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0017264_15	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0017264_16	K07729	53.9	0.0000000000000037	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0017264_16	phrog_5823	54.6	0.0000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017264_16	UniRef90_A0A415L5I4	119.0	5.9e-34	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0017264_16	1120978.KB894087_gene408	59.7	0.0000000000299	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0017264_16	retron_type_VI_hth_cluster2_1	43.9	0.0000000000064	N/A	Retron
Pfam	UHGV-0017264_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0017264_16	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_17	phrog_31760	41.2	0.000000000021	N/A	unknown function
UniRef90	UHGV-0017264_18	UniRef90_UPI001D0976C2	260.0	0	actin family protein	N/A
UniRef90	UHGV-0017264_20	UniRef90_UPI0015705952	94.4	8.92e-24	toxin HipA	N/A
eggNOG-mapper	UHGV-0017264_20	478749.BRYFOR_05417	63.5	0.00000000000241	N/A	N/A
PHROG	UHGV-0017264_24	phrog_3584	143.3	1.49939e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0017264_24	411459.RUMOBE_00953	478.0	0	N/A	N/A
structural_annotation	UHGV-0017264_24	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0017264_25	K03469	45.4	0.0000000000015	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0017264_25	phrog_531	54.6	0.000000000000002	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017264_25	UniRef90_A0A173WRS0	239.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0017264_25	411459.RUMOBE_00952	232.0	0	RNase H	N/A
Pfam	UHGV-0017264_25	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0017264_25	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0017264_25	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017264_26	411459.RUMOBE_00951	277.0	0	N/A	N/A
PHROG	UHGV-0017264_27	phrog_8470	342.5	0	N/A	unknown function
UniRef90	UHGV-0017264_27	UniRef90_UPI001D086F83	892.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0017264_27	411459.RUMOBE_00950	944.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0017264_27	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0017264_27	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_28	phrog_15982	134.8	8.20001e-40	N/A	unknown function
UniRef90	UHGV-0017264_28	UniRef90_A5ZPN2	662.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017264_28	411459.RUMOBE_00949	662.0	0	N/A	N/A
Pfam	UHGV-0017264_28	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0017264_28	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0017264_28	PF12961,PF11300,MF_00771,NF002615,COG2411	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_29	phrog_7566	95.3	3.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0017264_29	411459.RUMOBE_00948	192.0	0	N/A	N/A
PHROG	UHGV-0017264_30	phrog_23707	81.3	1.3e-23	N/A	unknown function
UniRef90	UHGV-0017264_30	UniRef90_UPI00156E1A02	134.0	2.09e-39	alanine racemase	N/A
eggNOG-mapper	UHGV-0017264_30	411483.FAEPRAA2165_01889	60.1	0.000000000632	N/A	N/A
UniRef90	UHGV-0017264_31	UniRef90_A0A1C5V846	64.3	0.00000000000271	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0017264_31	500632.CLONEX_03572	60.8	0.0000000000133	N/A	N/A
UniRef90	UHGV-0017264_33	UniRef90_A0A173WN74	142.0	4.49999e-41	Sigma-70, region 4	N/A
Pfam	UHGV-0017264_33	PF18024	N/A	N/A	Helix-turn-helix domain	HTH_50
Pfam	UHGV-0017264_33	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
PHROG	UHGV-0017264_34	phrog_6568	57.9	1.4e-16	N/A	unknown function
PHROG	UHGV-0017264_35	phrog_36	51.1	0.000000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017264_35	UniRef90_UPI000931D7F9	238.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0017264_35	411459.RUMOBE_00943	241.0	0	N/A	N/A
structural_annotation	UHGV-0017264_35	PF02996	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017264_36	PF09855,COG3478	N/A	N/A	N/A	N/A
Pfam	UHGV-0017264_37	PF20712	N/A	N/A	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
KOfam	UHGV-0017264_38	K07474	137.8	1.2e-40	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0017264_38	phrog_51	134.2	8.1e-40	terminase small subunit	head and packaging
UniRef90	UHGV-0017264_38	UniRef90_A0A417CPY2	308.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0017264_38	742740.HMPREF9474_03499	216.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-0017264_38	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0017264_38	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0017264_38	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0017264_39	K06909	97.9	1.4e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0017264_39	phrog_2	78.6	1.3e-22	terminase large subunit	head and packaging
UniRef90	UHGV-0017264_39	UniRef90_UPI0011DDB413	898.0	0	terminase	N/A
eggNOG-mapper	UHGV-0017264_39	1304866.K413DRAFT_0811	655.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0017264_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0017264_39	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_40	phrog_533	270.3	0	portal protein	head and packaging
UniRef90	UHGV-0017264_40	UniRef90_UPI001C0F908C	842.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0017264_40	394503.Ccel_3296	524.0	0	N/A	N/A
structural_annotation	UHGV-0017264_40	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_41	phrog_25639	119.6	7.7e-36	N/A	unknown function
eggNOG-mapper	UHGV-0017264_41	742740.HMPREF9474_03502	90.1	6.4e-23	N/A	N/A
PHROG	UHGV-0017264_42	phrog_581	232.2	0	minor head protein	head and packaging
UniRef90	UHGV-0017264_42	UniRef90_A0A414W2X3	989.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0017264_42	33035.JPJF01000093_gene2255	515.0	0	N/A	N/A
Pfam	UHGV-0017264_42	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0017264_42	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0017264_42	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0017264_42	PF06152,PF01129,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_43	phrog_1048	170.9	0	N/A	unknown function
UniRef90	UHGV-0017264_43	UniRef90_A0A373P4J3	295.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017264_43	457412.RSAG_01107	268.0	0	N/A	N/A
Pfam	UHGV-0017264_43	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0017264_43	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0017264_43	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_44	phrog_478	118.7	2.6e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0017264_44	UniRef90_R6R5K5	136.0	8.1e-39	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0017264_44	1111121.HMPREF1247_0834	136.0	1.08e-39	N/A	N/A
PHROG	UHGV-0017264_46	phrog_194	169.8	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0017264_46	UniRef90_UPI001D02A5C9	285.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0017264_46	1262449.CP6013_3198	172.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0017264_46	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0017264_46	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_47	phrog_212	291.8	0	major head protein	head and packaging
UniRef90	UHGV-0017264_47	UniRef90_A0A416Q289	583.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0017264_47	1294142.CINTURNW_1029	496.0	0	N/A	N/A
Pfam	UHGV-0017264_47	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0017264_47	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_48	phrog_15682	58.2	1.3e-16	N/A	unknown function
UniRef90	UHGV-0017264_48	UniRef90_J5WK97	68.9	0.000000000000114	Rho termination factor, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0017264_48	469618.FVAG_01311	69.3	0.000000000000027	N/A	N/A
PHROG	UHGV-0017264_49	phrog_541	93.5	1.8e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0017264_49	1298920.KI911353_gene4848	211.0	0	N/A	N/A
PHROG	UHGV-0017264_50	phrog_8710	153.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0017264_50	742740.HMPREF9474_03508	152.0	0	N/A	N/A
structural_annotation	UHGV-0017264_50	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017264_51	483218.BACPEC_01151	142.0	8.89965e-42	N/A	N/A
PHROG	UHGV-0017264_52	phrog_2595	91.3	8.6e-27	head-tail connector protein	connector
UniRef90	UHGV-0017264_52	UniRef90_UPI001C0EB705	246.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0017264_52	483218.BACPEC_01150	125.0	4.47e-35	N/A	N/A
Pfam	UHGV-0017264_52	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0017264_52	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_53	phrog_820	112.0	3.4e-33	major tail protein	tail
eggNOG-mapper	UHGV-0017264_53	33035.JPJF01000093_gene2246	187.0	0	N/A	N/A
Pfam	UHGV-0017264_53	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
structural_annotation	UHGV-0017264_53	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_54	phrog_8300	78.7	6.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0017264_54	742740.HMPREF9474_03512	98.2	2.12e-25	N/A	N/A
structural_annotation	UHGV-0017264_54	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_55	phrog_8355	81.7	4.6e-24	N/A	unknown function
UniRef90	UHGV-0017264_55	UniRef90_UPI001F2CFAB2	130.0	1.21e-37	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0017264_55	33035.JPJF01000093_gene2244	67.0	0.0000000000000996	N/A	N/A
PHROG	UHGV-0017264_56	phrog_1535	522.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0017264_56	UniRef90_A0A1C5RGR7	739.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0017264_56	33035.JPJF01000093_gene2243	572.0	0	phage tail tape measure protein	N/A
COG	UHGV-0017264_56	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0017264_56	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_57	phrog_1194	57.5	2.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0017264_57	33035.JPJF01000093_gene2242	156.0	0	N/A	N/A
structural_annotation	UHGV-0017264_57	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0017264_58	phrog_6616	653.2	0	tail protein	tail
UniRef90	UHGV-0017264_58	UniRef90_R5QUN9	700.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0017264_58	476272.RUMHYD_01992	181.0	1.26117e-44	N/A	N/A
structural_annotation	UHGV-0017264_58	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A