UHGV-0017288 (vOTU-069368)

Viral Genome: UHGV-0017288

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0017288
vOTU ID	vOTU-069368
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_15_1726__NODE_2749_length_32997_cov_10.711817
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9759
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.97
Jumbo phage	No

Genome content
Genome length (bp)	32,997
GC content	56.29%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	93%
Average CDS length (bps)	733.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0017288_1	K14059	273.8	0	int; integrase	N/A
PHROG	UHGV-0017288_1	phrog_1	198.1	0	integrase	integration and excision
UniRef90	UHGV-0017288_1	UniRef90_UPI00095121BF	628.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0017288_1	1291050.JAGE01000002_gene3375	602.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0017288_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0017288_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0017288_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0017288_1	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017288_2	1449050.JNLE01000003_gene980	66.2	0.00000000175	N/A	N/A
PHROG	UHGV-0017288_3	phrog_1914	116.8	2e-34	N/A	unknown function
UniRef90	UHGV-0017288_3	UniRef90_UPI00195D1542	277.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0017288_3	1160721.RBI_I01604	114.0	3.28e-29	N/A	N/A
Pfam	UHGV-0017288_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0017288_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0017288_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0017288_4	K18830	65.1	1.2e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0017288_4	phrog_8	54.5	0.0000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017288_4	UniRef90_A0A3A9EYK4	108.0	2.47e-26	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0017288_4	525254.HMPREF0072_0267	94.4	1.19e-22	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-0017288_4	retron_type_VI_hth_cluster2_1	40.7	0.000000000045	N/A	Retron
Pfam	UHGV-0017288_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0017288_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0017288_6	UniRef90_UPI001C03922B	69.7	0.0000000000000346	excisionase family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0017288_6	1291050.JAGE01000002_gene3380	63.2	0.00000000000309	N/A	N/A
structural_annotation	UHGV-0017288_6	PF12728,TIGR01764	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017288_8	PF19607	N/A	N/A	N/A	N/A
KOfam	UHGV-0017288_9	K03546	63.9	2e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0017288_9	phrog_1499	445.1	0	N/A	unknown function
UniRef90	UHGV-0017288_9	UniRef90_UPI00195C90A1	473.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0017288_9	411462.DORLON_00812	459.0	0	AAA ATPase domain	N/A
Pfam	UHGV-0017288_9	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0017288_9	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0017288_9	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_10	phrog_124	221.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017288_10	UniRef90_F0SXE1	365.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017288_10	1232449.BAHV02000010_gene2697	367.0	0	AAA domain	N/A
Pfam	UHGV-0017288_10	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0017288_10	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_11	phrog_2698	157.5	0	N/A	unknown function
UniRef90	UHGV-0017288_11	UniRef90_UPI001B3C89FE	140.0	1.62e-39	N/A	N/A
eggNOG-mapper	UHGV-0017288_11	1321784.HMPREF1987_01110	128.0	1.35e-35	N/A	N/A
structural_annotation	UHGV-0017288_11	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-0017288_12	K17677	370.5	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0017288_12	phrog_16	280.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017288_12	UniRef90_A0A1I0J5V3	834.0	0	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-0017288_12	610130.Closa_1369	823.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0017288_12	mREase_IV_00005	128.8	5e-38	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0017288_12	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0017288_12	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0017288_12	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0017288_12	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0017288_13	K07505	370.0	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0017288_13	phrog_2597	1093.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017288_13	UniRef90_UPI001107534D	933.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0017288_13	552396.HMPREF0863_02435	917.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0017288_13	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0017288_13	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0017288_13	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0017288_13	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0017288_15	K01160	52.0	0.00000000000002	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0017288_15	phrog_140	98.4	6.9e-29	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017288_15	UniRef90_UPI00195E3E15	196.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0017288_15	742738.HMPREF9460_01358	196.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0017288_15	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0017288_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0017288_15	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0017288_17	K07726	42.4	0.000000000012	K07726; putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0017288_17	155864.EDL933_0960	50.4	0.00000803	helix-turn-helix	N/A
Pfam	UHGV-0017288_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0017288_17	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0017288_17	PF13560,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017288_19	742738.HMPREF9460_02503	50.4	0.00000387	N/A	N/A
structural_annotation	UHGV-0017288_19	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_20	phrog_1595	52.9	0.0000000000000031	terminase small subunit	head and packaging
UniRef90	UHGV-0017288_20	UniRef90_UPI001CF819B6	120.0	4.21e-32	terminase	N/A
eggNOG-mapper	UHGV-0017288_20	679192.HMPREF9013_1308	120.0	4.44e-33	N/A	N/A
KOfam	UHGV-0017288_21	K06909	118.0	1.1e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0017288_21	phrog_10250	197.5	0	N/A	unknown function
UniRef90	UHGV-0017288_21	UniRef90_A0A316PPL4	531.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0017288_21	877414.ATWA01000001_gene906	503.0	0	Terminase-like family	N/A
Pfam	UHGV-0017288_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0017288_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0017288_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0017288_21	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_22	phrog_64	358.9	0	portal protein	head and packaging
UniRef90	UHGV-0017288_22	UniRef90_A0A316PPQ6	601.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0017288_22	877414.ATWA01000001_gene907	552.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0017288_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0017288_22	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0017288_22	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_23	phrog_115	289.4	0	minor head protein	head and packaging
UniRef90	UHGV-0017288_23	UniRef90_R6J0C1	261.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0017288_23	742733.HMPREF9469_01825	216.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0017288_23	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0017288_23	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0017288_23	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_25	phrog_2657	195.9	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017288_25	UniRef90_UPI00164A231C	311.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0017288_25	411490.ANACAC_00702	276.0	0	phage regulatory protein, rha family	N/A
Pfam	UHGV-0017288_25	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0017288_25	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0017288_25	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0017288_25	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_26	phrog_172	116.1	3.4e-34	head scaffolding protein	head and packaging
UniRef90	UHGV-0017288_26	UniRef90_A0A316RQZ9	106.0	8.31e-25	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0017288_26	1499683.CCFF01000014_gene3909	93.6	1.16e-20	N/A	N/A
Pfam	UHGV-0017288_26	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0017288_26	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_27	phrog_283	292.7	0	major head protein	head and packaging
UniRef90	UHGV-0017288_27	UniRef90_A0A1I2NUB2	510.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0017288_27	1499683.CCFF01000014_gene3908	509.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0017288_27	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0017288_27	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017288_29	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_31	phrog_5	51.2	0.000000000000032	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0017288_31	1235800.C819_00481	69.3	0.00000000000173	N/A	N/A
Pfam	UHGV-0017288_31	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0017288_31	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_32	phrog_78	42.9	0.0000000000086	tail terminator	connector
structural_annotation	UHGV-0017288_32	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_33	phrog_158	49.9	0.00000000000006	major tail protein	tail
UniRef90	UHGV-0017288_33	UniRef90_R5YR40	181.0	0	Major tail protein putative	N/A
eggNOG-mapper	UHGV-0017288_33	1280692.AUJL01000025_gene2074	72.8	0.0000000000000209	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0017288_33	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0017288_33	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017288_34	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_36	phrog_1535	114.2	2.7e-39	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0017288_36	1232453.BAIF02000058_gene1637	71.6	0.0000000014	phage tail tape measure protein	N/A
COG	UHGV-0017288_36	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0017288_36	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_37	phrog_1194	87.3	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0017288_37	877414.ATWA01000001_gene917	143.0	1.24996e-42	N/A	N/A
structural_annotation	UHGV-0017288_37	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_38	phrog_6616	107.9	5e-32	tail protein	tail
eggNOG-mapper	UHGV-0017288_38	1262449.CP6013_3213	102.0	1.53e-19	Phage minor structural protein	N/A
COG	UHGV-0017288_38	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0017288_38	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0017288_39	phrog_4105	74.9	9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0017288_39	1394176.AWUO01000014_gene648	74.7	5.32e-16	N/A	N/A
PHROG	UHGV-0017288_40	phrog_443	55.3	0.0000000000000019	holin	lysis
UniRef90	UHGV-0017288_40	UniRef90_UPI001B3C9F75	75.5	1.19e-16	holin	N/A
eggNOG-mapper	UHGV-0017288_40	1298920.KI911353_gene2669	70.1	0.00000000000000286	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0017288_40	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0017288_40	PF16945	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017288_41	588581.Cpap_1521	79.3	7.75e-18	N/A	N/A
KOfam	UHGV-0017288_42	K01185	159.5	0	E3.2.1.17; lysozyme [EC:3.2.1.17]	N/A
PHROG	UHGV-0017288_42	phrog_7	182.4	0	endolysin	lysis
UniRef90	UHGV-0017288_42	UniRef90_A0A841WQ48	156.0	6.28062e-42	Lysozyme	N/A
eggNOG-mapper	UHGV-0017288_42	640513.Entas_4674	147.0	1.76999e-40	lysozyme	N/A
Pfam	UHGV-0017288_42	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme
Pfam	UHGV-0017288_42	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0017288_42	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
HAMAP	UHGV-0017288_42	MF_04110	N/A	N/A	Endolysin	N/A
structural_annotation	UHGV-0017288_42	PF01471,PF00959,MF_04110,COG3772,COG3409	N/A	N/A	N/A	N/A