UHGV-0017372 (vOTU-071540)

Viral Genome: UHGV-0017372

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0017372
vOTU ID	vOTU-071540
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_C_4_1831__NODE_1117_length_56486_cov_30.065433
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9731
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.43
Jumbo phage	No

Genome content
Genome length (bp)	56,486
GC content	26.50%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	101
CDS density	89%
Average CDS length (bps)	495.00
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0017372_4	phrog_23747	154.6	0	N/A	unknown function
UniRef90	UHGV-0017372_4	UniRef90_A0A7Y9A9N6	77.0	0.00000000000000159	Magnesium-transporting ATPase (P-type)	N/A
structural_annotation	UHGV-0017372_4	NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017372_11	PF09871,TIGR00739,COG4014	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_22	phrog_606	44.9	0.0000000000013	terminase small subunit	head and packaging
UniRef90	UHGV-0017372_22	UniRef90_UPI001D07B715	83.6	7.79e-17	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0017372_22	1280663.ATVR01000009_gene2143	67.4	0.0000000000144	N/A	N/A
Pfam	UHGV-0017372_22	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
PHROG	UHGV-0017372_25	phrog_4264	91.1	8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0017372_25	1500386.A0A060AF46_9CAUD	61.6	0.000000000177	N/A	N/A
PHROG	UHGV-0017372_27	phrog_374	163.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0017372_27	1460635.JCM19038_3433	153.0	2.03048e-42	N/A	N/A
structural_annotation	UHGV-0017372_27	PF12647	N/A	N/A	N/A	N/A
KOfam	UHGV-0017372_32	K01520	99.6	3.6e-29	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0017372_32	phrog_135	98.4	4.8e-29	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017372_32	UniRef90_R6N421	172.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0017372_32	226185.EF_0039	144.0	5.93996e-41	dUTPase	N/A
Pfam	UHGV-0017372_32	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0017372_32	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0017372_32	PF00692,PF01381,MF_00116,NF010561,NF041951,COG0756,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017372_38	NF041485	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_39	phrog_38	190.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0017372_39	UniRef90_A0A7G9WJY4	209.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0017372_39	1232453.BAIF02000058_gene1623	184.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0017372_39	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
COG	UHGV-0017372_39	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017372_39	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_41	phrog_64	187.1	0	portal protein	head and packaging
UniRef90	UHGV-0017372_41	UniRef90_A0A3D0LYK0	237.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0017372_41	1232453.BAIF02000058_gene1625	151.0	2.4e-37	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0017372_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0017372_41	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017372_42	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_43	phrog_909	56.5	4.9e-16	major head protein	head and packaging
UniRef90	UHGV-0017372_43	UniRef90_A0A098MDH2	68.2	0.00000000000454	N/A	N/A
eggNOG-mapper	UHGV-0017372_43	1158607.UAU_01759	73.9	0.00000000000000558	N/A	N/A
structural_annotation	UHGV-0017372_43	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_44	phrog_29	249.8	0	major head protein	head and packaging
UniRef90	UHGV-0017372_44	UniRef90_UPI00082C04A5	359.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0017372_44	1347368.HG964404_gene4993	297.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0017372_44	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0017372_44	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017372_48	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017372_49	PF17395,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017372_50	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_51	phrog_158	41.2	0.000000000025	major tail protein	tail
eggNOG-mapper	UHGV-0017372_51	1121333.JMLH01000047_gene1013	177.0	0	N/A	N/A
structural_annotation	UHGV-0017372_51	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017372_52	UniRef90_A0A1C0ADY7	88.6	1.26e-20	N/A	N/A
eggNOG-mapper	UHGV-0017372_52	469596.HMPREF9488_01311	83.6	1.92e-19	N/A	N/A
Pfam	UHGV-0017372_52	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0017372_52	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017372_53	1121333.JMLH01000047_gene1011	79.3	8.52e-17	N/A	N/A
PHROG	UHGV-0017372_54	phrog_1535	140.3	1.29998e-41	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0017372_54	1121866.AUGK01000003_gene1437	218.0	0	phage tail tape measure protein	N/A
COG	UHGV-0017372_54	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0017372_54	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_55	phrog_1194	58.1	1.4e-16	N/A	unknown function
Pfam	UHGV-0017372_55	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0017372_55	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_56	phrog_6616	96.2	2.6e-28	tail protein	tail
eggNOG-mapper	UHGV-0017372_56	1121333.JMLH01000047_gene1007	116.0	1.67e-23	N/A	N/A
structural_annotation	UHGV-0017372_56	PF01105,PF04862,NF033848,TIGR04362	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_57	phrog_372	141.7	2.20004e-42	tail protein	tail
UniRef90	UHGV-0017372_57	UniRef90_E9RT77	157.0	2.33e-36	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0017372_57	1042156.CXIVA_07170	80.5	0.000000000000748	tail collar domain protein	N/A
COG	UHGV-0017372_57	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0017372_57	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017372_58	UniRef90_A0A8I1VFF3	51.6	0.00000159	Hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0017372_58	632292.Calhy_0788	50.1	0.00000137	Haemolysin XhlA	N/A
Pfam	UHGV-0017372_60	PF04647	N/A	N/A	Accessory gene regulator B	AgrB
eggNOG-mapper	UHGV-0017372_61	658655.HMPREF0988_00919	58.2	0.0000000256	N/A	N/A
PHROG	UHGV-0017372_63	phrog_16490	146.2	5.60519e-45	N/A	unknown function
eggNOG-mapper	UHGV-0017372_63	476272.RUMHYD_01770	132.0	5.46e-35	N/A	N/A
structural_annotation	UHGV-0017372_64	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017372_65	476272.RUMHYD_01772	52.8	0.00000257	N/A	N/A
PHROG	UHGV-0017372_66	phrog_3754	76.1	3.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0017372_66	397290.C810_05204	67.4	0.000000000000935	N/A	N/A
structural_annotation	UHGV-0017372_67	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_68	phrog_21357	102.8	2.4e-30	endolysin	lysis
UniRef90	UHGV-0017372_68	UniRef90_A0A3D2KVT9	176.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0017372_68	1232453.BAIF02000039_gene3530	124.0	3.52e-31	CHAP domain	N/A
Pfam	UHGV-0017372_68	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0017372_68	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0017372_68	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0017372_68	PF00877,TIGR02594,COG3738	N/A	N/A	N/A	N/A
KOfam	UHGV-0017372_70	K02316	68.8	8.3e-20	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0017372_70	phrog_11992	108.0	1e-31	N/A	unknown function
UniRef90	UHGV-0017372_70	UniRef90_UPI0005D1C8EE	84.0	6.97e-17	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-0017372_70	1514668.JOOA01000002_gene2050	84.0	1.17e-17	CHC2 zinc finger domain protein	N/A
PADLOC	UHGV-0017372_70	drt-UG29	60.8	1.4e-17	DRT	DRT
Pfam	UHGV-0017372_70	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0017372_70	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0017372_70	PF01807,PF00401	N/A	N/A	N/A	N/A
Pfam	UHGV-0017372_71	PF00486	N/A	N/A	Transcriptional regulatory protein, C terminal	Trans_reg_C
structural_annotation	UHGV-0017372_72	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0017372_73	K18959	210.8	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-0017372_73	phrog_16	192.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017372_73	UniRef90_A0A174R105	378.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0017372_73	1449050.JNLE01000003_gene3908	347.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-0017372_73	mREase_IV_00004	56.3	3.4e-16	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0017372_73	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0017372_73	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0017372_73	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0017372_73	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017372_74	UniRef90_A0A5M8BQ18	79.0	4.56e-16	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0017372_74	1449050.JNLE01000003_gene3909	75.9	0.00000000000000162	Recombination protein U	N/A
structural_annotation	UHGV-0017372_74	PF03838,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0017372_75	K03111	133.8	1.9e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0017372_75	phrog_44	134.2	8.8e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017372_75	UniRef90_R7IS09	172.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0017372_75	398512.JQKC01000002_gene1869	155.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0017372_75	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0017372_75	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0017372_75	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0017372_75	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0017372_75	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_77	phrog_1227	203.7	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017372_77	UniRef90_A0A374HKI3	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017372_77	1120998.AUFC01000030_gene2216	226.0	0	N/A	N/A
Pfam	UHGV-0017372_77	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0017372_77	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0017372_77	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_82	phrog_1499	179.4	0	N/A	unknown function
UniRef90	UHGV-0017372_82	UniRef90_A0A1C6FNE5	367.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0017372_82	1120998.AUFC01000030_gene2215	371.0	0	DNA recombination	N/A
COG	UHGV-0017372_82	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
PHROG	UHGV-0017372_83	phrog_1499	50.1	0.000000000000047	N/A	unknown function
eggNOG-mapper	UHGV-0017372_83	887325.HMPREF0381_0099	87.4	1.97e-19	DNA recombination	N/A
Pfam	UHGV-0017372_83	PF13175	N/A	N/A	AAA ATPase domain	AAA_15
COG	UHGV-0017372_83	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
KOfam	UHGV-0017372_84	K04769	62.8	8e-18	spoVT; AbrB family transcriptional regulator, stage V sporulation protein T	N/A
PHROG	UHGV-0017372_84	phrog_4681	53.8	0.0000000000000026	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0017372_84	UniRef90_R7FI06	73.6	3.36e-16	MazG family protein	N/A
eggNOG-mapper	UHGV-0017372_84	1151292.QEW_4126	62.4	0.0000000000234	SpoVT / AbrB like domain	N/A
Pfam	UHGV-0017372_84	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0017372_84	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0017372_84	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
PHROG	UHGV-0017372_85	phrog_561	123.5	1.1e-36	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017372_85	UniRef90_UPI001EE8E2AA	173.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0017372_85	861454.HMPREF9099_00346	163.0	0	N/A	N/A
Pfam	UHGV-0017372_85	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0017372_94	PF10552	N/A	N/A	N/A	N/A
KOfam	UHGV-0017372_96	K00558	219.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0017372_96	phrog_116	230.4	0	DNA methyltransferase	other
UniRef90	UHGV-0017372_96	UniRef90_A0A3D0XYY2	455.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0017372_96	1121871.AUAT01000002_gene1371	226.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0017372_96	MTase_II_00058	204.8	0	Type II methyltransferase	RM
Pfam	UHGV-0017372_96	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0017372_96	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0017372_96	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0017372_96	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_97	phrog_864	256.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017372_97	UniRef90_R6HC20	367.0	0	Phage/plasmid primase P4 family C-terminal domain protein	N/A
eggNOG-mapper	UHGV-0017372_97	1111454.HMPREF1250_2060	322.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0017372_97	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0017372_97	PF19263	N/A	N/A	N/A	DUF5906
NCBIFam	UHGV-0017372_97	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0017372_97	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0017372_97	PF05272,PF02257,NF005477,COG3378	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017372_98	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0017372_99	phrog_2349	53.0	0.0000000000000062	N/A	unknown function