UHGV-0017668 (vOTU-030272)

Viral Genome: UHGV-0017668

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0017668
vOTU ID	vOTU-030272
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_H_5_1561__NODE_1483_length_32909_cov_12.544073
Associated BioSample	SAMEA4765851
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.72 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9741
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.89
Jumbo phage	No

Genome content
Genome length (bp)	32,909
GC content	54.36%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	89%
Average CDS length (bps)	554.94
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.72)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0017668_1	phrog_27197	82.6	3.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0017668_1	394503.Ccel_3068	54.3	0.000000311	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0017668_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0017668_1	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017668_3	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017668_4	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017668_6	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_8	phrog_7838	129.5	2.6e-38	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017668_8	UniRef90_A0A8D9UGW3	182.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0017668_8	742767.HMPREF9456_02052	152.0	9.94922e-44	N/A	N/A
structural_annotation	UHGV-0017668_8	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-0017668_9	K03111	133.8	1.8e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0017668_9	phrog_44	143.3	1.10002e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017668_9	UniRef90_A0A844DI52	215.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0017668_9	718252.FP2_06770	201.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0017668_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0017668_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0017668_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0017668_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0017668_9	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_10	phrog_15768	117.9	6.9e-35	N/A	unknown function
UniRef90	UHGV-0017668_10	UniRef90_E2ZNS6	161.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-0017668_10	748224.HMPREF9436_03357	161.0	0	N/A	N/A
Pfam	UHGV-0017668_10	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0017668_10	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017668_11	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_13	phrog_424	89.7	2.7e-26	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0017668_13	445972.ANACOL_01819	445.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0017668_13	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0017668_13	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0017668_14	K01160	45.7	0.0000000000016	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0017668_14	phrog_34	41.0	0.000000000034	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017668_14	UniRef90_A0A844DBG8	129.0	3.59e-37	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0017668_14	875454.BAEW01000002_gene491	92.0	2.95e-23	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0017668_14	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0017668_14	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0017668_16	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017668_17	PF17941,MF_01917,NF010490,COG3886	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_19	phrog_2412	48.0	0.00000000000019	N/A	unknown function
KOfam	UHGV-0017668_20	K06909	129.5	3.1e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0017668_20	phrog_10250	137.3	7.30006e-41	N/A	unknown function
UniRef90	UHGV-0017668_20	UniRef90_A0A3A6EEP8	670.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0017668_20	1226322.HMPREF1545_00043	461.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0017668_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0017668_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0017668_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0017668_20	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_21	phrog_533	352.8	0	portal protein	head and packaging
UniRef90	UHGV-0017668_21	UniRef90_A0A291T9A9	719.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0017668_21	748224.HMPREF9436_03340	714.0	0	N/A	N/A
structural_annotation	UHGV-0017668_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_22	phrog_581	347.4	0	minor head protein	head and packaging
UniRef90	UHGV-0017668_22	UniRef90_D4K446	590.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0017668_22	718252.FP2_06690	590.0	0	N/A	N/A
Pfam	UHGV-0017668_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0017668_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017668_22	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_23	phrog_194	55.3	6.7e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-0017668_23	UniRef90_A0A1C6FYX1	137.0	7.15e-38	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0017668_23	663278.Ethha_0497	139.0	2.11e-39	N/A	N/A
Pfam	UHGV-0017668_23	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0017668_23	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_24	phrog_10	189.9	0	major head protein	head and packaging
UniRef90	UHGV-0017668_24	UniRef90_A0A2A7AII3	520.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0017668_24	1120998.AUFC01000030_gene2236	405.0	0	Phage capsid family	N/A
Pfam	UHGV-0017668_24	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0017668_24	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0017668_24	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0017668_24	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_25	phrog_541	82.0	5.7e-24	head-tail adaptor	connector
PHROG	UHGV-0017668_26	phrog_3366	88.5	6.8e-26	N/A	unknown function
Pfam	UHGV-0017668_26	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0017668_26	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_27	phrog_556	93.1	1.8e-27	minor head protein	head and packaging
UniRef90	UHGV-0017668_27	UniRef90_D4K441	108.0	1.56e-27	Minor capsid	N/A
eggNOG-mapper	UHGV-0017668_27	718252.FP2_06630	108.0	2.62e-28	Minor capsid protein	N/A
Pfam	UHGV-0017668_27	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0017668_27	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_28	phrog_3266	116.0	1.7e-34	tail completion	connector
UniRef90	UHGV-0017668_28	UniRef90_UPI001F2730AA	117.0	8.47e-31	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0017668_28	545697.HMPREF0216_02854	109.0	1.54e-28	N/A	N/A
structural_annotation	UHGV-0017668_28	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017668_29	UniRef90_A0A174M1L1	100.0	1.08e-22	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0017668_29	748224.HMPREF9436_03330	152.0	7.00649e-45	N/A	N/A
structural_annotation	UHGV-0017668_29	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017668_30	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_31	phrog_706	115.6	3.2e-34	N/A	unknown function
UniRef90	UHGV-0017668_31	UniRef90_UPI0011AF1F88	122.0	3.87e-31	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0017668_31	663278.Ethha_0101	90.9	4.77e-20	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0017668_31	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0017668_31	PF06854	N/A	N/A	N/A	N/A
KOfam	UHGV-0017668_32	K10421	40.8	0.0000000000033	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0017668_32	phrog_9959	81.8	8.5e-27	tail length tape measure protein	tail
UniRef90	UHGV-0017668_32	UniRef90_UPI001C038824	341.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0017668_32	411470.RUMGNA_02228	130.0	1.8e-28	tape measure	N/A
Pfam	UHGV-0017668_32	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0017668_32	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0017668_32	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0017668_32	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_33	phrog_33	63.3	5.2e-18	distal tail protein Dit	tail
UniRef90	UHGV-0017668_33	UniRef90_A0A1C6G0J5	75.1	0.0000000000012	Phage tail protein	N/A
structural_annotation	UHGV-0017668_33	PF20753,PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_34	phrog_18110	61.1	1.1e-17	N/A	unknown function
UniRef90	UHGV-0017668_34	UniRef90_A0A1Y3TWK1	187.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0017668_34	871584.D9ZNF0_9CAUD	59.7	0.000000866	peptidoglycan catabolic process	N/A
Pfam	UHGV-0017668_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
structural_annotation	UHGV-0017668_34	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0017668_36	K07273	168.7	0	acm; lysozyme	N/A
PHROG	UHGV-0017668_36	phrog_291	133.2	2.1e-39	endolysin	lysis
UniRef90	UHGV-0017668_36	UniRef90_UPI001D0EE7D8	262.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0017668_36	748224.HMPREF9436_00154	245.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0017668_36	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0017668_36	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0017668_36	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_37	phrog_1863	76.0	2.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0017668_37	748224.HMPREF9436_00408	108.0	3.31e-30	N/A	N/A
PHROG	UHGV-0017668_38	phrog_263	83.8	1.1e-24	holin	lysis
UniRef90	UHGV-0017668_38	UniRef90_A0A329UCA4	110.0	4.46e-30	Phage holin	N/A
eggNOG-mapper	UHGV-0017668_38	411483.FAEPRAA2165_00003	105.0	7.18e-29	SPP1 phage holin	N/A
Pfam	UHGV-0017668_38	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0017668_38	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0017668_38	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_42	phrog_13890	58.7	7.1e-17	N/A	unknown function
UniRef90	UHGV-0017668_42	UniRef90_A0A1C7FKE8	59.3	0.000000000223	Arc domain-containing protein	N/A
eggNOG-mapper	UHGV-0017668_42	657322.FPR_28500	46.2	0.00000889	N/A	N/A
structural_annotation	UHGV-0017668_42	NF010256	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017668_43	UniRef90_A0A415ZLW7	64.7	0.0000000000378	DNA-binding response regulator	N/A
eggNOG-mapper	UHGV-0017668_43	411469.EUBHAL_02513	64.3	0.000000000082	N/A	N/A
Pfam	UHGV-0017668_43	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0017668_43	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0017668_48	phrog_16490	54.0	7.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0017668_48	476272.RUMHYD_01770	57.8	0.000000168	N/A	N/A
structural_annotation	UHGV-0017668_49	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0017668_51	K22300	62.7	7.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0017668_51	phrog_8	77.3	2.6e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017668_51	UniRef90_UPI0008FB6703	73.2	0.0000000000000124	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0017668_51	2325.TKV_c21810	73.6	0.00000000000000166	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0017668_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0017668_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0017668_51	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A