UHGV-0018009 (vOTU-011136)

Viral Genome: UHGV-0018009

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0018009
vOTU ID	vOTU-011136
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_6_1816__NODE_1251_length_38262_cov_24.446353
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.29 (High-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.28
Jumbo phage	No

Genome content
Genome length (bp)	38,262
GC content	56.16%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	94%
Average CDS length (bps)	642.80
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.29)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0018009_2	phrog_13256	78.7	3.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0018009_2	1226322.HMPREF1545_00132	68.9	0.0000000000000111	N/A	N/A
PHROG	UHGV-0018009_3	phrog_4105	79.6	3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0018009_3	742733.HMPREF9469_05011	58.5	0.00000000103	N/A	N/A
PHROG	UHGV-0018009_4	phrog_134	47.0	0.00000000000033	N/A	unknown function
eggNOG-mapper	UHGV-0018009_4	1151292.QEW_0674	48.9	0.00000015	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0018009_4	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0018009_4	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0018009_5	1226322.HMPREF1545_00128	68.9	0.000000000000109	N/A	N/A
UniRef90	UHGV-0018009_6	UniRef90_A0A4D7AHL6	73.2	0.0000000000208	Collagen-like protein	N/A
eggNOG-mapper	UHGV-0018009_6	1226322.HMPREF1545_00064	89.4	2.74e-17	N/A	N/A
structural_annotation	UHGV-0018009_7	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_9	phrog_1357	271.8	0	major head protein	head and packaging
UniRef90	UHGV-0018009_9	UniRef90_UPI001D02EBA7	470.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0018009_9	1203606.HMPREF1526_02746	360.0	0	N/A	N/A
Pfam	UHGV-0018009_9	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0018009_9	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0018009_9	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_10	phrog_13908	240.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0018009_10	1410650.JHWL01000003_gene2831	100.0	1.55e-21	N/A	N/A
KOfam	UHGV-0018009_11	K07584	55.6	7.2e-16	N/A	N/A
PHROG	UHGV-0018009_11	phrog_4478	51.6	0.0000000000000092	peptidase	other
UniRef90	UHGV-0018009_11	UniRef90_A0A117KW78	65.1	0.000000000023	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0018009_11	273068.TTE0914	65.1	0.00000000000385	Cysteine protease Prp	N/A
Pfam	UHGV-0018009_11	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0018009_11	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018009_11	PF04327,NF011125,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_12	phrog_156	320.0	0	portal protein	head and packaging
UniRef90	UHGV-0018009_12	UniRef90_A0A8D9UH10	619.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0018009_12	748224.HMPREF9436_02547	509.0	0	N/A	N/A
structural_annotation	UHGV-0018009_12	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0018009_13	K06909	99.9	2.8e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0018009_13	phrog_979	194.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0018009_13	UniRef90_UPI001BB47C17	806.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0018009_13	748224.HMPREF9436_01395	628.0	0	Terminase-like family	N/A
Pfam	UHGV-0018009_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0018009_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0018009_13	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_14	phrog_606	78.8	7.2e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0018009_14	UniRef90_UPI00195648BB	165.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0018009_14	397290.C810_05185	132.0	2.59e-37	DNA-packaging protein gp3	N/A
Pfam	UHGV-0018009_14	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0018009_14	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0018009_15	K22299	42.0	0.000000000018	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0018009_15	UniRef90_A0A1C6J963	107.0	7.05e-29	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0018009_15	1226322.HMPREF1545_00039	70.5	0.00000000000000361	sequence-specific DNA binding	N/A
Pfam	UHGV-0018009_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0018009_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0018009_16	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-0018009_17	K02647	56.3	4.2e-16	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-0018009_17	UniRef90_UPI00164DE10C	60.1	0.000000000139	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0018009_17	1301100.HG529387_gene5110	60.1	0.000000000847	Putative sugar diacid recognition	N/A
Pfam	UHGV-0018009_17	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-0018009_17	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-0018009_17	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0018009_19	K00390	55.4	9.7e-16	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0018009_19	phrog_424	63.0	4.8e-18	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0018009_19	UniRef90_UPI001D087498	252.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0018009_19	1121115.AXVN01000007_gene3560	166.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-0018009_19	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0018009_19	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0018009_19	PF01507,MF_00064,NF009214,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0018009_21	K00558	42.0	0.0000000000068	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0018009_21	phrog_757	120.1	1.3e-35	DNA methyltransferase	other
UniRef90	UHGV-0018009_21	UniRef90_A0A8D9PDD1	405.0	0	DNA (Cytosine 5) methyltransferase	N/A
eggNOG-mapper	UHGV-0018009_21	622312.ROSEINA2194_01264	367.0	0	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0018009_21	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0018009_21	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0018009_24	K01160	62.0	1.6e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0018009_24	phrog_140	114.2	9.6e-34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018009_24	UniRef90_K1T7H8	114.0	1.09e-30	Endodeoxyribonuclease RusA family protein	N/A
eggNOG-mapper	UHGV-0018009_24	857293.CAAU_0790	98.2	1.82e-24	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0018009_24	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0018009_24	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0018009_24	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_26	phrog_2149	72.2	7.8e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018009_26	UniRef90_A0A3M2DYE6	74.7	0.00000000000172	N/A	N/A
eggNOG-mapper	UHGV-0018009_26	1095750.HMPREF9970_1674	191.0	0	N/A	N/A
structural_annotation	UHGV-0018009_26	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0018009_27	K03111	142.0	5.89947e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0018009_27	phrog_44	141.3	5.5001e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018009_27	UniRef90_A0A1Q6RGI0	189.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0018009_27	1226322.HMPREF1545_04080	184.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0018009_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0018009_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0018009_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0018009_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0018009_27	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0018009_28	K07451	42.1	0.000000000015	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0018009_28	phrog_7370	60.8	1.9e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018009_28	UniRef90_UPI001C122365	136.0	2.17e-39	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0018009_28	1235800.C819_02254	72.4	0.00000000000000703	HNH nucleases	N/A
Pfam	UHGV-0018009_28	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0018009_29	phrog_72	67.3	1.8e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018009_29	UniRef90_A0A8D9PDS2	173.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0018009_29	445972.ANACOL_01825	159.0	0	N/A	N/A
structural_annotation	UHGV-0018009_29	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_30	phrog_434	44.3	0.0000000000024	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018009_30	UniRef90_B0PAM4	150.0	1.26958e-42	YqaJ domain-containing protein	N/A
Pfam	UHGV-0018009_30	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-0018009_30	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_31	phrog_659	40.1	0.00000000004	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018009_31	UniRef90_A0A845QLQ8	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-0018009_31	1462526.BN990_01807	91.7	5.11e-20	N/A	N/A
Pfam	UHGV-0018009_31	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0018009_31	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_32	phrog_4973	50.8	0.000000000000024	N/A	unknown function
UniRef90	UHGV-0018009_32	UniRef90_A0A3D3Y5F2	65.1	0.00000000000272	DNA-binding protein	N/A
Pfam	UHGV-0018009_32	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0018009_32	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018009_34	PF14354,TIGR03655	N/A	N/A	N/A	N/A
Pfam	UHGV-0018009_37	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0018009_37	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018009_39	UniRef90_UPI0018A07F89	52.8	0.000000347	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0018009_39	411473.RUMCAL_01355	52.4	0.00000039	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0018009_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0018009_39	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_42	phrog_8	42.6	0.000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0018009_42	UniRef90_UPI0006850BB0	94.4	1.47e-22	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0018009_42	411460.RUMTOR_02056	53.1	0.000000381	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0018009_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0018009_42	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
Pfam	UHGV-0018009_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0018009_44	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0018009_45	K14059	228.0	0	int; integrase	N/A
PHROG	UHGV-0018009_45	phrog_1	200.4	0	integrase	integration and excision
UniRef90	UHGV-0018009_45	UniRef90_UPI001C124E9B	400.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0018009_45	1226322.HMPREF1545_00144	358.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0018009_45	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0018009_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0018009_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0018009_45	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018009_49	UniRef90_A0A8D9PDQ3	78.2	1.78e-17	ECF sigma factor	N/A
structural_annotation	UHGV-0018009_49	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_50	phrog_22978	961.6	0	N/A	unknown function
UniRef90	UHGV-0018009_50	UniRef90_A0A1Y4WLF7	1040.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0018009_50	1410650.JHWL01000003_gene2814	524.0	0	N/A	N/A
Pfam	UHGV-0018009_50	PF13699	N/A	N/A	N/A	DUF4157
Pfam	UHGV-0018009_50	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
eggNOG-mapper	UHGV-0018009_51	1226322.HMPREF1545_00786	91.7	1.15e-16	N/A	N/A
Pfam	UHGV-0018009_52	PF07889	N/A	N/A	N/A	DUF1664
Pfam	UHGV-0018009_52	PF05377	N/A	N/A	Flagella accessory protein C (FlaC)	FlaC_arch
PHROG	UHGV-0018009_53	phrog_511	234.6	0	internal virion protein	head and packaging
UniRef90	UHGV-0018009_53	UniRef90_A0A8D9UH72	539.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0018009_53	1226322.HMPREF1545_00785	348.0	0	N/A	N/A
structural_annotation	UHGV-0018009_53	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_54	phrog_12105	106.2	2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0018009_54	1226322.HMPREF1545_03850	68.9	0.000000000000254	N/A	N/A
KOfam	UHGV-0018009_55	K08640	97.8	1.7e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0018009_55	phrog_18955	145.0	3.29305e-43	N/A	unknown function
UniRef90	UHGV-0018009_55	UniRef90_UPI001C035E39	633.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0018009_55	1235797.C816_04171	311.0	0	Peptidase M15	N/A
Pfam	UHGV-0018009_55	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0018009_55	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0018009_55	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018009_55	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0018009_56	phrog_16802	52.5	0.0000000000000073	N/A	unknown function
UniRef90	UHGV-0018009_56	UniRef90_K1UL76	158.0	0	Holin, toxin secretion/phage lysis	N/A
eggNOG-mapper	UHGV-0018009_56	796940.HMPREF9628_00128	80.1	3.58e-18	Toxin secretion phage lysis holin	N/A
Pfam	UHGV-0018009_56	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0018009_56	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0018009_56	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A