UHGV-0018056 (vOTU-080266)

Viral Genome: UHGV-0018056

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0018056
vOTU ID	vOTU-080266
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_D_4_2182__NODE_2774_length_42620_cov_78.371107
Associated BioSample	SAMEA4766184
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.85
Jumbo phage	No

Genome content
Genome length (bp)	42,620
GC content	54.93%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	71
CDS density	91%
Average CDS length (bps)	547.73
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0018056_1	phrog_27197	91.3	2.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0018056_1	394503.Ccel_3068	57.0	0.000000058	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0018056_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0018056_1	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018056_3	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018056_4	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018056_6	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_7	phrog_674	145.2	4.59626e-43	N/A	unknown function
UniRef90	UHGV-0018056_7	UniRef90_A0A3A6E846	478.0	0	N/A	N/A
eggNOG-mapper	UHGV-0018056_7	1121441.AUCX01000014_gene537	89.4	1.28e-17	N/A	N/A
Pfam	UHGV-0018056_7	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0018056_7	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_8	phrog_2760	184.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018056_8	UniRef90_A0A3A6EAW6	478.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0018056_8	1235794.C811_01355	150.0	1.01e-40	RecT family	N/A
Pfam	UHGV-0018056_8	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0018056_8	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0018056_8	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0018056_8	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018056_9	UniRef90_UPI001CBB85F6	115.0	4.22e-29	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0018056_9	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0018056_10	K02086	58.0	1e-16	dnaD; DNA replication protein	N/A
PHROG	UHGV-0018056_10	phrog_186	70.6	2.6e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018056_10	UniRef90_A0A6N7TLH4	364.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0018056_10	877411.JMMA01000002_gene2052	63.5	0.00000000734	N/A	N/A
Pfam	UHGV-0018056_10	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0018056_10	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0018056_10	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0018056_10	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_12	phrog_757	180.4	0	DNA methyltransferase	other
UniRef90	UHGV-0018056_12	UniRef90_A0A417JTT5	304.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0018056_12	1095750.HMPREF9970_0173	226.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0018056_12	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0018056_12	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_13	phrog_3136	137.8	2.70002e-41	N/A	unknown function
UniRef90	UHGV-0018056_13	UniRef90_UPI001C02A61B	380.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0018056_13	1235792.C808_00630	63.9	0.0000000014	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0018056_13	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0018056_13	PF12961,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0018056_14	K01160	59.4	1.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0018056_14	phrog_34	61.9	1.3e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018056_14	UniRef90_A0A6N7TND6	217.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0018056_14	875454.BAEW01000002_gene491	135.0	1.8e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0018056_14	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0018056_14	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0018056_14	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_16	phrog_36	40.4	0.000000000049	transcriptional regulator	transcription regulation
UniRef90	UHGV-0018056_16	UniRef90_A0A6N7TNN9	72.0	0.000000000000594	N/A	N/A
structural_annotation	UHGV-0018056_16	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-0018056_17	K00571	110.7	1.8e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0018056_17	phrog_498	422.3	0	DNA methyltransferase	other
UniRef90	UHGV-0018056_17	UniRef90_R5AIZ8	481.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0018056_17	742823.HMPREF9465_00225	409.0	0	PFAM DNA methylase N-4 N-6	N/A
PADLOC	UHGV-0018056_17	MTase_II_00015	379.8	0	Type II methyltransferase	RM
Pfam	UHGV-0018056_17	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0018056_17	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0018056_17	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0018056_17	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_18	phrog_309	113.1	1.8e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0018056_18	UniRef90_UPI000AC737F1	96.7	1.8e-22	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0018056_18	748224.HMPREF9436_03342	176.0	0	transposase activity	N/A
COG	UHGV-0018056_18	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0018056_18	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0018056_19	K06909	142.5	3.69943e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0018056_19	phrog_10250	175.2	0	N/A	unknown function
UniRef90	UHGV-0018056_19	UniRef90_A0A844D8I4	843.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0018056_19	411490.ANACAC_00783	493.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0018056_19	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0018056_19	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0018056_19	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0018056_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0018056_19	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_20	phrog_64	126.9	7.3e-38	portal protein	head and packaging
UniRef90	UHGV-0018056_20	UniRef90_A0A6N7TNT3	875.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0018056_20	1042156.CXIVA_01850	85.5	0.00000000000000603	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0018056_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0018056_20	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_22	phrog_2468	80.0	2.3e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0018056_22	UniRef90_A0A6N7TLR7	618.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0018056_22	1504822.CCNO01000013_gene286	114.0	5.19e-25	cell adhesion	N/A
Pfam	UHGV-0018056_22	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0018056_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018056_22	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_24	phrog_5	50.2	0.000000000000058	tail completion or Neck1 protein	connector
UniRef90	UHGV-0018056_24	UniRef90_A0A6N7TNP6	296.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0018056_24	1123309.AQYB01000018_gene814	94.0	1.41e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0018056_24	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0018056_24	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_27	phrog_544	155.5	0	major head protein	head and packaging
UniRef90	UHGV-0018056_27	UniRef90_R0BKA1	458.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0018056_27	476272.RUMHYD_01776	339.0	0	N/A	N/A
structural_annotation	UHGV-0018056_27	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_29	phrog_17977	42.0	0.000000000012	N/A	unknown function
UniRef90	UHGV-0018056_29	UniRef90_A0A844DHJ8	119.0	1.63e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0018056_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018056_30	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_31	phrog_885	68.4	8.6e-20	major tail protein	tail
eggNOG-mapper	UHGV-0018056_31	1111121.HMPREF1247_0789	153.0	1.54143e-44	N/A	N/A
structural_annotation	UHGV-0018056_31	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_34	phrog_9959	96.6	1.5e-28	tail length tape measure protein	tail
UniRef90	UHGV-0018056_34	UniRef90_A0A6N7TLD3	676.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0018056_34	663278.Ethha_0487	159.0	7.32e-37	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0018056_34	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0018056_34	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0018056_34	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0018056_34	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018056_35	UniRef90_A0A352P156	111.0	2.59e-26	MtfA protein	N/A
eggNOG-mapper	UHGV-0018056_35	1304866.K413DRAFT_1235	119.0	6.87e-30	PFAM Phage tail protein	N/A
COG	UHGV-0018056_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0018056_35	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_36	phrog_3558	192.6	0	tail protein	tail
eggNOG-mapper	UHGV-0018056_36	411460.RUMTOR_00484	139.0	5.63e-32	Prophage endopeptidase tail	N/A
Pfam	UHGV-0018056_36	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0018056_36	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0018056_36	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_38	phrog_10993	265.6	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0018056_38	UniRef90_UPI00082CBED4	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-0018056_38	1121334.KB911071_gene1970	214.0	0	N/A	N/A
Pfam	UHGV-0018056_38	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0018056_38	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0018056_39	K07273	157.4	0	acm; lysozyme	N/A
PHROG	UHGV-0018056_39	phrog_291	122.2	4.5e-36	endolysin	lysis
UniRef90	UHGV-0018056_39	UniRef90_A0A564U0D3	335.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0018056_39	718252.FP2_04890	290.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0018056_39	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0018056_39	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0018056_39	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_41	phrog_15303	79.1	4.4e-23	N/A	unknown function
structural_annotation	UHGV-0018056_42	PF07870,MF_01506	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_46	phrog_13890	49.2	0.000000000000067	N/A	unknown function
structural_annotation	UHGV-0018056_46	NF010256	N/A	N/A	N/A	N/A
KOfam	UHGV-0018056_49	K23779	48.3	0.00000000000022	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
Pfam	UHGV-0018056_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0018056_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0018056_49	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_50	phrog_3754	94.6	9.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-0018056_50	1235790.C805_00054	110.0	1.56e-29	N/A	N/A
PHROG	UHGV-0018056_51	phrog_21718	87.9	1.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0018056_51	397290.C810_05210	78.6	3.18e-16	N/A	N/A
PHROG	UHGV-0018056_52	phrog_22984	70.4	2.3e-20	N/A	unknown function
PHROG	UHGV-0018056_53	phrog_16490	191.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0018056_53	397290.C810_01328	152.0	2.07995e-41	N/A	N/A
PHROG	UHGV-0018056_54	phrog_20016	197.4	0	N/A	unknown function
UniRef90	UHGV-0018056_54	UniRef90_A0A285PT46	214.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0018056_54	1226322.HMPREF1545_00077	183.0	0	N/A	N/A
structural_annotation	UHGV-0018056_54	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018056_55	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0018056_57	K14059	140.1	2.50006e-41	int; integrase	N/A
PHROG	UHGV-0018056_57	phrog_1	179.0	0	integrase	integration and excision
UniRef90	UHGV-0018056_57	UniRef90_A0A174D176	513.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0018056_57	411471.SUBVAR_05137	254.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0018056_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0018056_57	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0018056_57	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0018056_58	K22300	40.4	0.000000000052	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0018056_58	UniRef90_A0A6N7TLT0	343.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0018056_58	266265.Bxe_A3948	55.1	0.0000000915	Helix-turn-helix domain	N/A
Pfam	UHGV-0018056_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0018056_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0018056_58	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018056_62	UniRef90_A0A3S9H8P5	132.0	1.17e-33	SAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0018056_62	1280696.ATVY01000034_gene3237	119.0	2.58e-29	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
Pfam	UHGV-0018056_62	PF08461	N/A	N/A	Ribonuclease R winged-helix domain	HTH_12
eggNOG-mapper	UHGV-0018056_63	641112.ACOK01000103_gene519	59.3	0.0000000329	N/A	N/A
KOfam	UHGV-0018056_65	K22300	47.4	0.00000000000039	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0018056_65	phrog_2967	49.7	0.000000000000064	transcriptional regulator	transcription regulation
UniRef90	UHGV-0018056_65	UniRef90_A0A844DFR0	188.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0018056_65	748224.HMPREF9436_01444	142.0	4.65932e-42	N/A	N/A
Pfam	UHGV-0018056_65	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0018056_65	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0018056_65	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0018056_69	760568.Desku_0919	95.9	1.02e-21	N/A	N/A
structural_annotation	UHGV-0018056_69	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0018056_70	1121865.OMW_01950	75.1	7.98e-17	N/A	N/A
structural_annotation	UHGV-0018056_70	PF17516,NF007197	N/A	N/A	N/A	N/A
PHROG	UHGV-0018056_71	phrog_4433	145.1	5.10073e-43	N/A	unknown function
eggNOG-mapper	UHGV-0018056_71	33035.JPJF01000122_gene2458	112.0	9.74e-28	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0018056_71	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0018056_71	NF000318	N/A	N/A	N/A	N/A