UHGV-0018256 (vOTU-079225)

Viral Genome: UHGV-0018256

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0018256
vOTU ID	vOTU-079225
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_17_1727__NODE_1745_length_58048_cov_11.102603
Associated BioSample	SAMEA4766007
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9752
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.57
Jumbo phage	No

Genome content
Genome length (bp)	58,048
GC content	49.35%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	85
CDS density	92%
Average CDS length (bps)	631.52
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0018256_1	phrog_270	97.4	2.1e-28	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0018256_1	941770.GL622178_gene367	90.5	2.57e-20	Replication initiation and membrane attachment	N/A
COG	UHGV-0018256_1	COG3756	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_2	phrog_9804	108.5	5.9e-32	N/A	unknown function
UniRef90	UHGV-0018256_2	UniRef90_A0A3D1LDS2	109.0	1.14e-26	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0018256_2	1499683.CCFF01000013_gene503	83.6	2.51e-17	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0018256_2	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0018256_2	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_15	phrog_1384	76.4	3.5e-22	Mom-like DNA modification protein	other
UniRef90	UHGV-0018256_15	UniRef90_A0A0K2CZB3	156.0	0	Acetyltransferase	N/A
eggNOG-mapper	UHGV-0018256_15	1121468.AUBR01000007_gene285	84.3	2.37e-18	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0018256_15	PF11039,MF_02210,NF040503,COG1247	N/A	N/A	N/A	N/A
Pfam	UHGV-0018256_17	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0018256_19	K01520	129.7	2.4e-38	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0018256_19	phrog_135	122.0	3.6e-36	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018256_19	UniRef90_A0A3D3Y5Q7	150.0	3.22299e-44	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0018256_19	1282887.AUJG01000016_gene1113	141.0	3.19e-40	N/A	N/A
Pfam	UHGV-0018256_19	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0018256_19	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0018256_19	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0018256_19	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018256_20	PF08207	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_21	phrog_474	97.1	2.7e-28	phosphofructokinase	other
UniRef90	UHGV-0018256_21	UniRef90_UPI00103054B4	93.6	1.2e-22	N/A	N/A
eggNOG-mapper	UHGV-0018256_21	1095750.HMPREF9970_1026	87.0	8.02e-21	N/A	N/A
Pfam	UHGV-0018256_21	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0018256_21	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0018256_22	K01160	46.7	0.00000000000081	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0018256_22	phrog_4632	52.1	4e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018256_22	UniRef90_A0A7X8IB41	117.0	1.9e-31	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0018256_22	469604.HMPREF0946_00819	57.0	0.0000000103	N/A	N/A
structural_annotation	UHGV-0018256_22	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0018256_23	K03111	137.5	1.4e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0018256_23	phrog_44	133.7	6e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018256_23	UniRef90_A0A316RPH6	140.0	8.67999e-40	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0018256_23	445972.ANACOL_04434	124.0	8.84e-34	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0018256_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0018256_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0018256_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0018256_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0018256_23	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_27	phrog_22978	353.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0018256_27	1321782.HMPREF1986_00356	237.0	0	N/A	N/A
Pfam	UHGV-0018256_27	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
Pfam	UHGV-0018256_27	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0018256_27	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
Pfam	UHGV-0018256_30	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
PHROG	UHGV-0018256_32	phrog_2172	134.2	6.4e-40	N/A	unknown function
UniRef90	UHGV-0018256_32	UniRef90_W1I4H7	171.0	0	Uncultured bacterium plasmid pRGI00071	N/A
eggNOG-mapper	UHGV-0018256_32	1408311.JNJM01000024_gene619	147.0	3.38e-40	Initiator Replication protein	N/A
Pfam	UHGV-0018256_32	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-0018256_32	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-0018256_32	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-0018256_32	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
KOfam	UHGV-0018256_33	K14060	117.6	1.2e-34	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0018256_33	phrog_125	160.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018256_33	UniRef90_A0A1G5B3B6	169.0	0	Site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-0018256_33	877420.ATVW01000008_gene521	172.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0018256_33	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0018256_33	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0018256_33	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018256_35	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_36	phrog_20016	193.9	0	N/A	unknown function
UniRef90	UHGV-0018256_36	UniRef90_A0A2Z4QB67	171.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0018256_36	1226322.HMPREF1545_00077	169.0	0	N/A	N/A
structural_annotation	UHGV-0018256_36	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_37	phrog_16490	118.7	7.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-0018256_37	397290.C810_01328	79.3	0.0000000000000214	N/A	N/A
PHROG	UHGV-0018256_38	phrog_22984	74.8	9.4e-22	N/A	unknown function
PHROG	UHGV-0018256_39	phrog_21718	117.9	6.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-0018256_39	397290.C810_05210	92.0	2.09e-21	N/A	N/A
PHROG	UHGV-0018256_40	phrog_3754	107.4	1.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0018256_40	476272.RUMHYD_01764	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-0018256_42	1121334.KB911071_gene1966	53.9	0.0000000167	N/A	N/A
KOfam	UHGV-0018256_44	K19304	111.8	7.7e-33	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0018256_44	phrog_7767	107.7	6.5e-32	metallo-endopeptidase	other
UniRef90	UHGV-0018256_44	UniRef90_A0A2E4G218	75.1	0.0000000000222	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0018256_44	665956.HMPREF1032_00102	111.0	3.43e-25	heme binding	N/A
Pfam	UHGV-0018256_44	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0018256_44	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0018256_44	PF01551,PF09992,NF040883,COG0739,COG3698	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_45	phrog_4105	77.3	1.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0018256_45	537013.CLOSTMETH_01753	57.0	0.00000000358	N/A	N/A
KOfam	UHGV-0018256_47	K19721	41.8	0.0000000000037	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0018256_47	phrog_5073	50.0	0.00000000000003	tail fiber protein	tail
Pfam	UHGV-0018256_47	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
eggNOG-mapper	UHGV-0018256_53	1449126.JQKL01000002_gene1688	84.7	0.00000000000000966	N/A	N/A
structural_annotation	UHGV-0018256_53	PF11134,NF038128,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018256_54	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_56	phrog_14242	93.9	1.1e-27	major head protein	head and packaging
UniRef90	UHGV-0018256_56	UniRef90_A0A3D2CI53	317.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0018256_56	935948.KE386495_gene2267	56.2	0.000009	N/A	N/A
NCBIFam	UHGV-0018256_56	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0018256_56	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_58	phrog_156	107.0	1.6e-31	portal protein	head and packaging
eggNOG-mapper	UHGV-0018256_58	588581.Cpap_1526	281.0	0	N/A	N/A
structural_annotation	UHGV-0018256_58	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0018256_61	K06909	288.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0018256_61	phrog_3717	200.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0018256_61	UniRef90_A0A329MU22	430.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0018256_61	696281.Desru_1088	414.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0018256_61	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0018256_61	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0018256_61	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0018256_61	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_62	phrog_606	55.7	8.9e-16	terminase small subunit	head and packaging
UniRef90	UHGV-0018256_62	UniRef90_UPI001D088AD3	69.3	0.0000000000042	DNA-packaging protein	N/A
Pfam	UHGV-0018256_62	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0018256_62	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_66	phrog_16123	90.7	1.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0018256_66	1273103.NM10_00919	83.6	2e-18	N/A	N/A
COG	UHGV-0018256_67	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0018256_67	PF01381,NF040522,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_68	phrog_3292	47.7	0.00000000000021	N/A	unknown function
UniRef90	UHGV-0018256_68	UniRef90_M1WWV3	61.6	0.000000000164	KTSC domain-containing protein	N/A
eggNOG-mapper	UHGV-0018256_68	1117319.PSPO_09654	65.1	0.0000000000733	KTSC domain	N/A
Pfam	UHGV-0018256_68	PF13619	N/A	N/A	KTSC domain	KTSC
COG	UHGV-0018256_68	COG1190	N/A	N/A	Lysyl-tRNA synthetase (class II)	N/A
structural_annotation	UHGV-0018256_68	PF13619	N/A	N/A	N/A	N/A
KOfam	UHGV-0018256_73	K07729	55.4	0.0000000000000012	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0018256_73	phrog_3	50.8	0.000000000000064	transcriptional repressor	transcription regulation
UniRef90	UHGV-0018256_73	UniRef90_UPI000E31F980	55.8	0.000000205	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0018256_73	1316408.HSISM1_2145	50.4	0.00000306	Transcriptional	N/A
PADLOC	UHGV-0018256_73	retron_type_VI_hth_cluster2_1	44.1	0.0000000000047	N/A	Retron
Pfam	UHGV-0018256_73	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0018256_73	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0018256_73	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0018256_74	K22300	63.2	5.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0018256_74	phrog_8	51.6	0.000000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0018256_74	UniRef90_R6HTL1	100.0	9.08e-25	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0018256_74	397290.C810_05152	99.8	1.93e-25	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0018256_74	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0018256_74	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0018256_74	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_82	phrog_14970	240.7	0	N/A	unknown function
UniRef90	UHGV-0018256_82	UniRef90_UPI00164BFA28	217.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0018256_82	697329.Rumal_1121	189.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0018256_82	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0018256_82	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
PHROG	UHGV-0018256_83	phrog_2205	112.1	3.2e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018256_83	UniRef90_UPI001E2B9DFF	74.7	0.000000000000138	host-nuclease inhibitor Gam family protein	N/A
eggNOG-mapper	UHGV-0018256_83	1519439.JPJG01000051_gene723	72.4	0.000000000000371	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-0018256_83	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
structural_annotation	UHGV-0018256_83	PF07352	N/A	N/A	N/A	N/A
PHROG	UHGV-0018256_84	phrog_72	52.1	0.0000000000000046	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018256_84	UniRef90_A0A8D9PDS2	162.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0018256_84	445972.ANACOL_01825	127.0	7.93e-35	N/A	N/A
structural_annotation	UHGV-0018256_84	PF05772	N/A	N/A	N/A	N/A