UHGV-0018368 (vOTU-096239)

Viral Genome: UHGV-0018368

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0018368
vOTU ID	vOTU-096239
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_21_1706__NODE_2719_length_28461_cov_9.134054
Associated BioSample	SAMEA4765986
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.55 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.08
Jumbo phage	No

Genome content
Genome length (bp)	28,461
GC content	59.96%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	93%
Average CDS length (bps)	520.12
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0018368_1	693746.OBV_22720	57.0	0.000000329	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0018368_1	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
PHROG	UHGV-0018368_2	phrog_19111	40.0	6.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0018368_2	411471.SUBVAR_06929	305.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0018368_2	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0018368_3	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018368_4	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_5	phrog_26795	130.6	2.5e-39	N/A	unknown function
UniRef90	UHGV-0018368_5	UniRef90_A0A5J6T4K8	134.0	2.17e-32	Minor tail protein	N/A
eggNOG-mapper	UHGV-0018368_5	1382315.JPOI01000001_gene271	136.0	3.26e-34	N/A	N/A
structural_annotation	UHGV-0018368_5	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_6	phrog_37549	77.4	3.9e-26	virion structural protein	head and packaging
UniRef90	UHGV-0018368_6	UniRef90_A0A3D0W045	224.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0018368_6	1195236.CTER_5103	124.0	2.31e-27	N/A	N/A
structural_annotation	UHGV-0018368_6	PF02010,PF06199,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_7	phrog_33680	144.7	3.50325e-43	N/A	unknown function
UniRef90	UHGV-0018368_7	UniRef90_A0A1M6L1P7	223.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0018368_7	498761.HM1_2969	207.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0018368_7	PF08614	N/A	N/A	Autophagy protein 16 (ATG16)	ATG16
COG	UHGV-0018368_7	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0018368_7	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018368_9	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_10	phrog_88	83.1	3.3e-24	major tail protein	tail
UniRef90	UHGV-0018368_10	UniRef90_S0FUN2	115.0	4.73e-29	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0018368_10	1195236.CTER_5106	115.0	7.93e-30	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0018368_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0018368_10	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018368_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_11	phrog_5	47.0	0.00000000000054	tail completion or Neck1 protein	connector
structural_annotation	UHGV-0018368_11	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0018368_12	1487921.DP68_11350	60.8	0.00000000014	N/A	N/A
structural_annotation	UHGV-0018368_12	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_13	phrog_1951	73.1	2.8e-21	head-tail adaptor	connector
UniRef90	UHGV-0018368_13	UniRef90_A0A1F8UNT5	65.5	0.0000000000087	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0018368_13	1094508.Tsac_2422	51.2	0.000000631	Phage head-tail joining protein	N/A
Pfam	UHGV-0018368_13	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0018368_13	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0018368_13	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0018368_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_14	phrog_5223	44.8	0.0000000000016	neck protein	connector
UniRef90	UHGV-0018368_14	UniRef90_E6MGY0	59.3	0.00000000177	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0018368_14	887929.HMP0721_1264	59.3	0.000000000298	N/A	N/A
PHROG	UHGV-0018368_15	phrog_10	182.6	0	major head protein	head and packaging
UniRef90	UHGV-0018368_15	UniRef90_UPI00189AE5FE	417.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0018368_15	1280689.AUJC01000011_gene1521	387.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0018368_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0018368_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0018368_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0018368_15	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0018368_16	K01358	132.6	4.3e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0018368_16	phrog_94	200.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0018368_16	UniRef90_UPI0018979DC8	208.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0018368_16	1280689.AUJC01000011_gene1520	189.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0018368_16	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0018368_16	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0018368_16	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_17	phrog_12	177.4	0	portal protein	head and packaging
UniRef90	UHGV-0018368_17	UniRef90_C4GAS6	500.0	0	Putative phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0018368_17	626523.GCWU000342_01027	500.0	0	Portal protein	N/A
Pfam	UHGV-0018368_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0018368_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0018368_17	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_18	phrog_9	382.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0018368_18	UniRef90_A0A1Y3W5R1	788.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0018368_18	1203606.HMPREF1526_00981	736.0	0	Terminase	N/A
Pfam	UHGV-0018368_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0018368_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0018368_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0018368_18	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_19	phrog_1066	124.9	3e-37	N/A	unknown function
eggNOG-mapper	UHGV-0018368_19	1341151.ASZU01000004_gene265	124.0	4.64e-35	N/A	N/A
structural_annotation	UHGV-0018368_19	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_20	phrog_119	48.6	0.0000000000001	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018368_20	UniRef90_A0A174XSZ8	124.0	8.33e-35	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-0018368_20	1235793.C809_01915	119.0	7.01e-33	HNH endonuclease	N/A
COG	UHGV-0018368_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0018368_21	1297617.JPJD01000059_gene2640	86.3	9.04e-20	N/A	N/A
structural_annotation	UHGV-0018368_21	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_22	phrog_3584	113.2	2e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0018368_22	537013.CLOSTMETH_02141	79.7	0.00000000000000181	N/A	N/A
structural_annotation	UHGV-0018368_22	PF21578,MF_00360	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018368_23	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_26	phrog_374	56.0	7.7e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0018368_26	1423807.BACO01000037_gene1103	68.2	0.00000000000166	N/A	N/A
PHROG	UHGV-0018368_28	phrog_190	99.1	4.2e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018368_28	UniRef90_UPI0006C2AC63	126.0	2.48e-34	N/A	N/A
eggNOG-mapper	UHGV-0018368_28	693746.OBV_25250	119.0	2.32e-32	N/A	N/A
Pfam	UHGV-0018368_28	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0018368_28	PF06356	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0018368_30	665956.HMPREF1032_03087	47.8	0.00000516	N/A	N/A
PHROG	UHGV-0018368_31	phrog_5781	72.7	4.9e-21	N/A	unknown function
UniRef90	UHGV-0018368_31	UniRef90_A0A413FXK8	115.0	1.65e-31	N/A	N/A
eggNOG-mapper	UHGV-0018368_31	573061.Clocel_3558	87.4	3.55e-21	N/A	N/A
Pfam	UHGV-0018368_31	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0018368_31	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0018368_31	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_32	phrog_3136	135.8	1.3e-40	N/A	unknown function
UniRef90	UHGV-0018368_32	UniRef90_A0A3D0HBD2	166.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0018368_32	97139.C824_00742	70.1	0.00000000000116	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0018368_32	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0018368_32	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_33	phrog_954	192.9	0	DNA methyltransferase	other
UniRef90	UHGV-0018368_33	UniRef90_A0A810Q0N4	288.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0018368_33	1280698.AUJS01000007_gene1028	264.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0018368_33	MTase_II_00074	191.3	0	Type II methyltransferase	RM
Pfam	UHGV-0018368_33	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0018368_33	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0018368_33	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
Pfam	UHGV-0018368_34	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0018368_34	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018368_38	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018368_39	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018368_41	PF10548	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0018368_42	642492.Clole_0961	68.9	0.0000000000000152	N/A	N/A
structural_annotation	UHGV-0018368_42	PF12286	N/A	N/A	N/A	N/A
KOfam	UHGV-0018368_45	K18830	55.7	0.0000000000000011	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0018368_45	phrog_8	55.8	7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0018368_45	UniRef90_A0A2U1BEG8	126.0	3.51e-35	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0018368_45	445972.ANACOL_03315	112.0	1.4e-30	N/A	N/A
PADLOC	UHGV-0018368_45	retron_type_VI_hth_cluster2_1	41.4	0.000000000029	N/A	Retron
Pfam	UHGV-0018368_45	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0018368_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0018368_45	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0018368_47	585394.RHOM_06430	60.5	0.0000000229	Competence protein ComEC	N/A
COG	UHGV-0018368_47	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-0018368_47	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-0018368_48	phrog_10292	78.5	8.1e-23	N/A	unknown function
UniRef90	UHGV-0018368_48	UniRef90_A0A416W984	107.0	4.33e-27	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0018368_48	1033810.HLPCO_001631	90.9	1.45e-21	TM2 domain	N/A
Pfam	UHGV-0018368_48	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0018368_48	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0018368_48	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0018368_49	K22299	48.4	0.00000000000018	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
Pfam	UHGV-0018368_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0018368_49	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0018368_49	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0018368_50	K06400	250.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0018368_50	phrog_95	263.6	0	integrase	integration and excision
UniRef90	UHGV-0018368_50	UniRef90_G9YSD9	415.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0018368_50	1408437.JNJN01000002_gene1420	403.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0018368_50	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0018368_50	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0018368_50	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0018368_50	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0018368_50	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A