UHGV-0018565 (vOTU-023459)

Viral Genome: UHGV-0018565

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0018565
vOTU ID	vOTU-023459
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_L_21_1526__NODE_881_length_39402_cov_9.583242
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	62.73 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9244
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.64
Jumbo phage	No

Genome content
Genome length (bp)	39,325
GC content	54.04%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	93%
Average CDS length (bps)	570.09
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0018565_1	phrog_498	213.0	0	DNA methyltransferase	other
UniRef90	UHGV-0018565_1	UniRef90_UPI0009BB5737	245.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0018565_1	1121342.AUCO01000004_gene630	237.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0018565_1	MTase_II_00015	220.9	0	Type II methyltransferase	RM
Pfam	UHGV-0018565_1	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0018565_1	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0018565_1	PF02195,MF_02015,TIGR04285,COG5119	N/A	N/A	N/A	N/A
KOfam	UHGV-0018565_4	K14059	101.6	1.2e-29	int; integrase	N/A
PHROG	UHGV-0018565_4	phrog_1	105.3	7e-31	integrase	integration and excision
UniRef90	UHGV-0018565_4	UniRef90_A0A2N1RIZ7	231.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0018565_4	158189.SpiBuddy_1822	207.0	0	DNA integration	N/A
COG	UHGV-0018565_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0018565_4	PF00589,PF02899,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-0018565_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
COG	UHGV-0018565_7	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0018565_10	phrog_11717	150.9	5.60519e-45	N/A	unknown function
eggNOG-mapper	UHGV-0018565_10	1399942.U3PCT3_9CAUD	147.0	1.51004e-41	N/A	N/A
PHROG	UHGV-0018565_11	phrog_6244	66.6	3.6e-19	N/A	unknown function
UniRef90	UHGV-0018565_11	UniRef90_A0A0S3KFR4	67.0	0.00000000454	Endonuclease	N/A
eggNOG-mapper	UHGV-0018565_11	585502.HMPREF0645_2602	113.0	1.22e-26	N/A	N/A
structural_annotation	UHGV-0018565_11	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_12	phrog_140	94.1	1.5e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018565_12	UniRef90_A0A5C4TGH4	87.4	2.95e-19	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0018565_12	743719.PaelaDRAFT_5642	76.6	7.51e-16	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0018565_12	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0018565_12	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0018565_12	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_13	phrog_19658	104.4	1.1e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018565_13	UniRef90_A0A412VJE1	58.2	0.00000215	N/A	N/A
eggNOG-mapper	UHGV-0018565_13	1294142.CINTURNW_1664	72.8	0.00000000000471	DnaD domain protein	N/A
Pfam	UHGV-0018565_13	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0018565_13	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0018565_14	K02315	100.2	2.3e-29	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0018565_14	phrog_50	87.7	1.6e-25	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018565_14	UniRef90_A0A2N1RAG3	89.0	4.68e-18	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0018565_14	471881.PROPEN_02009	63.9	0.000000000526	DNA replication protein	N/A
Pfam	UHGV-0018565_14	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0018565_14	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0018565_14	PF01695,MF_01158,NF005992,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0018565_16	K03111	97.8	1.8e-28	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0018565_16	phrog_44	91.2	1.6e-26	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018565_16	UniRef90_A0A652ZYM5	105.0	1.49e-26	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0018565_16	869209.Tresu_1236	103.0	3.43e-26	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0018565_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0018565_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0018565_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0018565_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0018565_16	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018565_26	UniRef90_A0A1V8ZDR6	79.0	9.53e-17	Plasmid maintenance system killer protein	N/A
eggNOG-mapper	UHGV-0018565_26	387344.LVIS_A05	63.9	0.0000000000129	Plasmid maintenance system killer	N/A
COG	UHGV-0018565_26	COG3549	N/A	N/A	Plasmid maintenance system killer protein	N/A
KOfam	UHGV-0018565_27	K21498	41.5	0.000000000032	higA-1; antitoxin HigA-1	N/A
eggNOG-mapper	UHGV-0018565_27	1539298.JO41_06165	50.1	0.00000427	BrnA antitoxin of type II toxin-antitoxin system	N/A
Pfam	UHGV-0018565_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0018565_27	PF14384	N/A	N/A	BrnA antitoxin of type II toxin-antitoxin system	BrnA_antitoxin
COG	UHGV-0018565_27	COG3514	N/A	N/A	N/A	N/A
KOfam	UHGV-0018565_30	K24213	89.0	2.5e-26	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0018565_30	phrog_5073	129.9	2.4e-38	tail fiber protein	tail
Pfam	UHGV-0018565_30	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0018565_31	phrog_1533	159.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0018565_31	552396.HMPREF0863_00269	268.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0018565_31	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0018565_31	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0018565_31	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0018565_31	PF05537,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_32	phrog_706	86.2	4.1e-25	N/A	unknown function
UniRef90	UHGV-0018565_32	UniRef90_U2UP44	58.2	0.000000599	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0018565_32	1321782.HMPREF1986_02275	58.2	0.0000001	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0018565_32	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0018565_32	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_34	phrog_3099	79.6	4.1e-23	N/A	unknown function
COG	UHGV-0018565_34	COG5297	N/A	N/A	Cellulase/cellobiase CelA1	N/A
structural_annotation	UHGV-0018565_34	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_36	phrog_556	75.3	7e-22	minor head protein	head and packaging
UniRef90	UHGV-0018565_36	UniRef90_UPI0008F9755C	57.4	0.0000000305	minor capsid protein	N/A
eggNOG-mapper	UHGV-0018565_36	665959.HMPREF1013_00196	51.2	0.00000119	Minor capsid protein	N/A
structural_annotation	UHGV-0018565_36	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_39	phrog_422	267.2	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0018565_39	658655.HMPREF0988_02560	201.0	0	N/A	N/A
structural_annotation	UHGV-0018565_39	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_40	phrog_194	110.0	2.5e-32	head scaffolding protein	head and packaging
UniRef90	UHGV-0018565_40	UniRef90_A0A173SF83	82.0	5.49e-16	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0018565_40	1334046.AYTB01000008_gene2312	63.5	0.000000000765	Phage minor structural protein GP20	N/A
Pfam	UHGV-0018565_40	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0018565_40	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_43	phrog_7445	57.4	2.5e-16	N/A	unknown function
UniRef90	UHGV-0018565_43	UniRef90_A0A318KCJ7	56.2	0.000000153	PcfK-like protein	N/A
eggNOG-mapper	UHGV-0018565_43	742766.HMPREF9455_01852	57.0	0.0000000122	PcfK-like protein	N/A
Pfam	UHGV-0018565_43	PF14058	N/A	N/A	PcfK-like protein	PcfK
PHROG	UHGV-0018565_44	phrog_8470	133.6	6.8e-40	N/A	unknown function
UniRef90	UHGV-0018565_44	UniRef90_UPI001C0192C2	73.9	0.000000000246	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0018565_44	1274374.CBLK010000060_gene542	90.9	4.62e-17	PcfJ-like protein	N/A
Pfam	UHGV-0018565_44	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0018565_44	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_54	phrog_1934	142.8	1.10002e-42	N/A	unknown function
UniRef90	UHGV-0018565_54	UniRef90_UPI001646AC4F	137.0	2.88e-39	zinc-finger-containing protein	N/A
eggNOG-mapper	UHGV-0018565_54	397290.C810_01488	141.0	1.27e-41	zinc-finger-containing domain	N/A
Pfam	UHGV-0018565_54	PF11672	N/A	N/A	zinc-finger-containing domain	DUF3268
structural_annotation	UHGV-0018565_54	PF11672	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_56	phrog_631	44.5	0.0000000000018	N/A	unknown function
COG	UHGV-0018565_57	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0018565_59	K11044	70.6	1.2e-20	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-0018565_59	phrog_581	205.1	0	minor head protein	head and packaging
UniRef90	UHGV-0018565_59	UniRef90_UPI0006885B69	161.0	4.31e-39	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0018565_59	1120998.AUFC01000030_gene2233	161.0	7.23e-40	N/A	N/A
Pfam	UHGV-0018565_59	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0018565_59	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0018565_59	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_60	phrog_533	279.8	0	portal protein	head and packaging
UniRef90	UHGV-0018565_60	UniRef90_A0A7V6NHH5	300.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0018565_60	883114.HMPREF9709_01198	164.0	2.32055e-42	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0018565_60	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0018565_61	K06909	158.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0018565_61	phrog_2	145.7	5.19882e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0018565_61	UniRef90_UPI0004AC7321	348.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0018565_61	1329516.JPST01000014_gene657	317.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-0018565_61	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0018565_61	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0018565_61	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0018565_61	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0018565_63	K07319	72.7	5.7e-21	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0018565_63	phrog_498	125.1	7.2e-37	DNA methyltransferase	other
UniRef90	UHGV-0018565_63	UniRef90_A0A7C6WAH1	129.0	4.95e-37	Site-specific DNA-methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0018565_63	1027273.GZ77_21170	127.0	7.73e-34	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0018565_63	MTase_II_00015	107.1	2.8e-31	Type II methyltransferase	RM
Pfam	UHGV-0018565_63	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0018565_63	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0018565_63	TIGR02469,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0018565_64	phrog_498	75.3	1.1e-21	DNA methyltransferase	other
UniRef90	UHGV-0018565_64	UniRef90_UPI000A77E282	106.0	1.07e-27	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0018565_64	521003.COLINT_02335	119.0	3.45e-31	DNA methylase	N/A
PADLOC	UHGV-0018565_64	MTase_II_00015	71.0	2.7e-20	Type II methyltransferase	RM
COG	UHGV-0018565_64	COG0863	N/A	N/A	DNA modification methylase	N/A