UHGV-0018570 (vOTU-066292)

Viral Genome: UHGV-0018570

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0018570
vOTU ID	vOTU-066292
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_L_21_1526__NODE_835_length_41145_cov_26.826142
Associated BioSample	SAMEA4765817
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9824
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.6
Jumbo phage	No

Genome content
Genome length (bp)	41,145
GC content	54.66%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	71
CDS density	95%
Average CDS length (bps)	551.07
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0018570_1	phrog_4433	257.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0018570_1	33035.JPJF01000122_gene2458	119.0	2.4e-29	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0018570_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0018570_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-0018570_2	UniRef90_UPI001C01A488	182.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0018570_2	561177.ANHYDRO_01396	99.8	3.83e-25	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0018570_2	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0018570_2	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_3	phrog_15768	62.3	1.1e-17	N/A	unknown function
UniRef90	UHGV-0018570_3	UniRef90_A0A1C6J8D5	123.0	1.21e-30	N/A	N/A
Pfam	UHGV-0018570_3	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0018570_3	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0018570_3	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0018570_3	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0018570_3	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0018570_4	K03111	148.3	7.00649e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0018570_4	phrog_44	145.8	2.29813e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018570_4	UniRef90_A0A1C5QDM6	183.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0018570_4	1226322.HMPREF1545_04080	182.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0018570_4	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0018570_4	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0018570_4	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0018570_4	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0018570_4	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018570_5	UniRef90_A0A3D3Y4P7	107.0	1.28e-28	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0018570_5	1048339.KB913029_gene4935	49.3	0.00000682	PFAM HNH endonuclease	N/A
Pfam	UHGV-0018570_5	PF13391	N/A	N/A	HNH endonuclease	HNH_2
COG	UHGV-0018570_5	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0018570_6	phrog_72	57.1	1.8e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018570_6	UniRef90_A0A2Z4Q9W9	135.0	5.82e-37	NinB	N/A
eggNOG-mapper	UHGV-0018570_6	445972.ANACOL_01825	127.0	2.07e-34	N/A	N/A
structural_annotation	UHGV-0018570_6	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_7	phrog_7838	148.4	4.76441e-44	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0018570_7	UniRef90_A0A8D9UGW3	196.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0018570_7	742767.HMPREF9456_02052	163.0	0	N/A	N/A
structural_annotation	UHGV-0018570_7	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
Pfam	UHGV-0018570_11	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0018570_15	PF13601,NF041230,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018570_16	PF09639,TIGR04176	N/A	N/A	N/A	N/A
KOfam	UHGV-0018570_17	K22300	61.1	2.5e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0018570_17	phrog_8	52.1	0.000000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0018570_17	UniRef90_A0A844DFR0	119.0	2.29e-32	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0018570_17	748224.HMPREF9436_01444	113.0	2e-30	N/A	N/A
PADLOC	UHGV-0018570_17	retron_type_VI_hth_cluster2_1	47.1	0.00000000000045	N/A	Retron
Pfam	UHGV-0018570_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0018570_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0018570_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0018570_19	1410638.JHXJ01000015_gene2445	169.0	0	N/A	N/A
structural_annotation	UHGV-0018570_19	PF07718,PF02883,NF007398,COG3121	N/A	N/A	N/A	N/A
Pfam	UHGV-0018570_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0018570_21	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0018570_22	K06400	361.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0018570_22	phrog_95	347.6	0	integrase	integration and excision
UniRef90	UHGV-0018570_22	UniRef90_A0A1C6JCC5	545.0	0	Resolvase, N terminal domain	N/A
eggNOG-mapper	UHGV-0018570_22	1235835.C814_03413	421.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0018570_22	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0018570_22	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0018570_22	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0018570_22	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0018570_22	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018570_26	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_27	phrog_21357	106.6	1.9e-31	endolysin	lysis
UniRef90	UHGV-0018570_27	UniRef90_A0A4D7AVW6	241.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0018570_27	97139.C824_00684	242.0	0	lysozyme activity	N/A
Pfam	UHGV-0018570_27	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0018570_27	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0018570_27	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0018570_27	PF01471,PF10030,TIGR02594,NF038080,COG3409,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_28	phrog_30034	101.4	1.1e-29	N/A	unknown function
UniRef90	UHGV-0018570_28	UniRef90_A0A3D1XGA4	132.0	2.19e-36	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0018570_28	1226322.HMPREF1545_00129	59.7	0.00000000309	N/A	N/A
KOfam	UHGV-0018570_30	K24214	49.6	0.00000000000003	OTOL1; otolin-1	N/A
PHROG	UHGV-0018570_30	phrog_5073	56.2	3.6e-16	tail fiber protein	tail
Pfam	UHGV-0018570_30	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0018570_31	phrog_15594	73.2	2.8e-21	N/A	unknown function
structural_annotation	UHGV-0018570_31	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_32	phrog_881	85.2	4e-25	holin	lysis
UniRef90	UHGV-0018570_32	UniRef90_A0A4Q7P349	113.0	1.02e-31	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0018570_32	742740.HMPREF9474_02251	113.0	1.86e-32	Putative phage holin Dp-1	N/A
Pfam	UHGV-0018570_32	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0018570_32	PF16938	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0018570_33	1232443.BAIA02000106_gene3111	55.8	0.0000000196	N/A	N/A
PHROG	UHGV-0018570_34	phrog_372	229.7	0	tail protein	tail
UniRef90	UHGV-0018570_34	UniRef90_UPI001C253CAD	90.5	0.00000000000000445	N/A	N/A
eggNOG-mapper	UHGV-0018570_34	1211844.CBLM010000016_gene1479	96.3	5.28e-18	N/A	N/A
Pfam	UHGV-0018570_34	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0018570_34	PF05895,MF_00791,NF010681,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_35	phrog_6616	405.5	0	tail protein	tail
UniRef90	UHGV-0018570_35	UniRef90_A0A3D3U8S7	379.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0018570_35	33035.JPJF01000043_gene1002	293.0	0	N/A	N/A
PHROG	UHGV-0018570_36	phrog_1194	70.2	2.6e-20	N/A	unknown function
structural_annotation	UHGV-0018570_36	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_37	phrog_1535	136.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0018570_37	UniRef90_A0A1C5N853	194.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0018570_37	411459.RUMOBE_01384	140.0	3.48e-31	phage tail tape measure protein	N/A
COG	UHGV-0018570_37	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0018570_38	phrog_706	119.7	2.3e-35	N/A	unknown function
UniRef90	UHGV-0018570_38	UniRef90_A0A173TZF2	243.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0018570_38	411459.RUMOBE_01383	202.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0018570_38	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0018570_38	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_39	phrog_11299	96.7	2.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0018570_39	33035.JPJF01000106_gene3125	87.0	6.27e-20	N/A	N/A
structural_annotation	UHGV-0018570_39	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_40	phrog_3099	139.7	1.6e-41	N/A	unknown function
eggNOG-mapper	UHGV-0018570_40	1304866.K413DRAFT_3043	177.0	0	N/A	N/A
structural_annotation	UHGV-0018570_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_41	phrog_3266	63.7	2.6e-18	tail completion	connector
eggNOG-mapper	UHGV-0018570_41	693746.OBV_18140	176.0	0	N/A	N/A
structural_annotation	UHGV-0018570_41	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_42	phrog_556	51.4	0.000000000000016	minor head protein	head and packaging
UniRef90	UHGV-0018570_42	UniRef90_UPI001F06267A	68.9	0.00000000000715	minor capsid protein	N/A
eggNOG-mapper	UHGV-0018570_42	33035.JPJF01000106_gene3128	65.5	0.0000000000286	N/A	N/A
Pfam	UHGV-0018570_42	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0018570_42	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018570_43	PF20536,MF_01370,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_44	phrog_541	55.1	0.0000000000000013	head-tail adaptor	connector
eggNOG-mapper	UHGV-0018570_44	693746.OBV_18110	112.0	1.36e-30	N/A	N/A
PHROG	UHGV-0018570_45	phrog_544	298.2	0	major head protein	head and packaging
UniRef90	UHGV-0018570_45	UniRef90_UPI0019576143	367.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0018570_45	411471.SUBVAR_06940	368.0	0	N/A	N/A
NCBIFam	UHGV-0018570_45	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0018570_45	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_46	phrog_194	75.7	7.9e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-0018570_46	UniRef90_UPI00164D9F94	226.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0018570_46	693746.OBV_18080	169.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0018570_46	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0018570_46	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_48	phrog_581	231.2	0	minor head protein	head and packaging
UniRef90	UHGV-0018570_48	UniRef90_A0A1C6I982	571.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0018570_48	693746.OBV_18050	487.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0018570_48	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0018570_48	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018570_48	PF06152,PF12636	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_49	phrog_8680	222.9	0	N/A	unknown function
UniRef90	UHGV-0018570_49	UniRef90_A0A3R6D7I3	254.0	0	N/A	N/A
eggNOG-mapper	UHGV-0018570_49	411470.RUMGNA_02208	229.0	0	N/A	N/A
Pfam	UHGV-0018570_49	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0018570_49	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_51	phrog_533	194.2	0	portal protein	head and packaging
UniRef90	UHGV-0018570_51	UniRef90_UPI000680A1DB	548.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0018570_51	693746.OBV_18040	387.0	0	N/A	N/A
structural_annotation	UHGV-0018570_51	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0018570_53	K06909	121.9	6.7e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0018570_53	phrog_10250	167.7	0	N/A	unknown function
UniRef90	UHGV-0018570_53	UniRef90_A0A3D3Y0N9	591.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0018570_53	1226322.HMPREF1545_00043	567.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0018570_53	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0018570_53	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0018570_53	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0018570_53	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0018570_54	UniRef90_UPI0009523D83	134.0	6.61e-38	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0018570_54	1226322.HMPREF1545_00042	133.0	3.16e-38	N/A	N/A
structural_annotation	UHGV-0018570_54	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_55	phrog_36	60.4	3.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0018570_55	UniRef90_UPI001C10AB33	114.0	1.39e-29	N/A	N/A
eggNOG-mapper	UHGV-0018570_55	580331.Thit_1400	89.0	1.44e-20	N/A	N/A
structural_annotation	UHGV-0018570_55	PF07374,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018570_61	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_62	phrog_38832	62.4	1.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0018570_62	665956.HMPREF1032_00143	63.9	0.000000000108	N/A	N/A
structural_annotation	UHGV-0018570_62	PF11717	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_64	phrog_599	43.7	0.0000000000053	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0018570_64	UniRef90_A0A845MWR1	89.4	2.96e-22	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0018570_64	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0018570_64	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0018570_64	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0018570_67	phrog_8446	69.5	1.2e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0018570_67	1123024.AUII01000013_gene394	54.7	0.000000345	N/A	N/A
eggNOG-mapper	UHGV-0018570_68	1408324.JNJK01000014_gene1982	140.0	1.04e-38	N/A	N/A
eggNOG-mapper	UHGV-0018570_69	1235798.C817_02585	47.0	0.00000532	N/A	N/A