UHGV-0019039 (vOTU-076597)

Viral Genome: UHGV-0019039

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0019039
vOTU ID	vOTU-076597
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_1_1719__NODE_1815_length_43092_cov_42.084901
Associated BioSample	SAMEA4765999
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.58
Jumbo phage	No

Genome content
Genome length (bp)	43,092
GC content	53.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	91%
Average CDS length (bps)	565.74
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0019039_1	phrog_4433	133.7	1.5e-39	N/A	unknown function
UniRef90	UHGV-0019039_1	UniRef90_A0A6M5C839	97.1	1.99e-22	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0019039_1	33035.JPJF01000122_gene2458	102.0	6.36e-24	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0019039_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0019039_1	PF12120,NF000066	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019039_3	1121865.OMW_01950	72.0	0.00000000000000131	N/A	N/A
structural_annotation	UHGV-0019039_3	PF17516,NF007197	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019039_4	760568.Desku_0919	100.0	1.75e-23	N/A	N/A
structural_annotation	UHGV-0019039_4	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0019039_5	K07741	140.9	1.99993e-41	antB; anti-repressor protein	N/A
PHROG	UHGV-0019039_5	phrog_63	125.2	6e-37	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0019039_5	UniRef90_A0A6N7TLD1	284.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0019039_5	1216932.CM240_0604	216.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0019039_5	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0019039_5	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0019039_5	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0019039_5	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019039_6	UniRef90_UPI0018995761	53.5	0.0000000347	helix-turn-helix transcriptional regulator	N/A
UniRef90	UHGV-0019039_8	UniRef90_A0A7X1LWA7	92.4	4.1e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0019039_8	428125.CLOLEP_02737	63.9	0.00000000000124	N/A	N/A
KOfam	UHGV-0019039_9	K07727	41.7	0.000000000027	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0019039_9	phrog_8	53.3	0.0000000000000061	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019039_9	UniRef90_A0A373XY93	91.3	3.39e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0019039_9	1321372.AQQB01000060_gene35	53.9	0.0000000432	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0019039_9	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0019039_9	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019039_10	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019039_13	321955.AAGP01000017_gene2211	65.1	0.000000000115	N/A	N/A
structural_annotation	UHGV-0019039_13	PF16900,NF040991	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019039_16	UniRef90_A0A6N7TLT0	207.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0019039_16	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0019039_16	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0019039_17	K14059	137.6	1.6e-40	int; integrase	N/A
PHROG	UHGV-0019039_17	phrog_1	164.3	0	integrase	integration and excision
UniRef90	UHGV-0019039_17	UniRef90_A0A6N7TNQ4	712.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0019039_17	411471.SUBVAR_05137	265.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0019039_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019039_17	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0019039_17	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019039_19	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_20	phrog_20016	206.3	0	N/A	unknown function
UniRef90	UHGV-0019039_20	UniRef90_A0A285PT46	215.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0019039_20	1226322.HMPREF1545_00077	181.0	0	N/A	N/A
structural_annotation	UHGV-0019039_20	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_21	phrog_16490	154.1	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0019039_21	397290.C810_05212	131.0	2.9e-34	N/A	N/A
PHROG	UHGV-0019039_22	phrog_22984	81.0	8e-24	N/A	unknown function
PHROG	UHGV-0019039_23	phrog_21718	125.2	4e-37	N/A	unknown function
eggNOG-mapper	UHGV-0019039_23	397290.C810_05210	101.0	3.76e-25	N/A	N/A
PHROG	UHGV-0019039_24	phrog_3754	96.2	3.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0019039_24	476272.RUMHYD_01764	150.0	2.8026e-45	N/A	N/A
UniRef90	UHGV-0019039_26	UniRef90_A0A174XWS3	79.0	8.46e-17	Bacterial regulatory proteins, luxR family	N/A
eggNOG-mapper	UHGV-0019039_26	689781.AUJX01000009_gene401	75.5	0.00000000000000577	N/A	N/A
Pfam	UHGV-0019039_26	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0019039_26	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_27	phrog_13890	62.2	5.8e-18	N/A	unknown function
UniRef90	UHGV-0019039_27	UniRef90_UPI0008F8D321	52.4	0.000000159	N/A	N/A
eggNOG-mapper	UHGV-0019039_27	742741.HMPREF9475_00396	53.9	0.0000000139	N/A	N/A
structural_annotation	UHGV-0019039_27	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019039_29	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_32	phrog_15303	78.2	8.5e-23	N/A	unknown function
PHROG	UHGV-0019039_33	phrog_1863	78.3	4.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0019039_33	718252.FP2_04900	134.0	4.79999e-40	N/A	N/A
KOfam	UHGV-0019039_34	K07273	148.2	7.14662e-44	acm; lysozyme	N/A
PHROG	UHGV-0019039_34	phrog_291	103.5	2.2e-30	endolysin	lysis
UniRef90	UHGV-0019039_34	UniRef90_A0A564U0D3	372.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0019039_34	718252.FP2_04890	232.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0019039_34	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0019039_34	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0019039_34	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_36	phrog_3558	182.6	0	tail protein	tail
UniRef90	UHGV-0019039_36	UniRef90_UPI001C01D15B	174.0	1.28919e-43	phage tail protein	N/A
eggNOG-mapper	UHGV-0019039_36	1304866.K413DRAFT_1236	87.8	0.00000000000000247	Phage minor structural protein, N-terminal	N/A
Pfam	UHGV-0019039_36	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0019039_36	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0019039_36	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019039_37	UniRef90_A0A415UCK7	86.7	1.02e-17	MtfA protein	N/A
eggNOG-mapper	UHGV-0019039_37	1111121.HMPREF1247_1241	99.4	2.73e-23	N/A	N/A
structural_annotation	UHGV-0019039_37	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_38	phrog_9959	95.2	3.9e-28	tail length tape measure protein	tail
UniRef90	UHGV-0019039_38	UniRef90_UPI001C038824	431.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0019039_38	411470.RUMGNA_02228	158.0	1.27e-37	tape measure	N/A
Pfam	UHGV-0019039_38	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0019039_38	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0019039_38	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0019039_38	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_41	phrog_885	68.7	6.9e-20	major tail protein	tail
eggNOG-mapper	UHGV-0019039_41	1111121.HMPREF1247_0789	149.0	6.45999e-43	N/A	N/A
structural_annotation	UHGV-0019039_41	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019039_42	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_43	phrog_17977	44.9	0.0000000000017	N/A	unknown function
UniRef90	UHGV-0019039_43	UniRef90_A0A844DHJ8	125.0	6.04e-35	Phage head closure protein	N/A
structural_annotation	UHGV-0019039_43	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_45	phrog_544	152.4	2.8026e-45	major head protein	head and packaging
UniRef90	UHGV-0019039_45	UniRef90_R0BKA1	455.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0019039_45	476272.RUMHYD_01776	337.0	0	N/A	N/A
structural_annotation	UHGV-0019039_45	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019039_46	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_47	phrog_478	126.8	9e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0019039_47	UniRef90_A0A373Q857	165.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0019039_47	1111121.HMPREF1247_0834	98.6	9.79e-25	N/A	N/A
PHROG	UHGV-0019039_48	phrog_5	49.3	0.00000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-0019039_48	UniRef90_A0A844DDB3	290.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0019039_48	1123309.AQYB01000018_gene814	94.4	9.95e-23	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0019039_48	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0019039_48	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_50	phrog_2468	79.7	1.3e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0019039_50	UniRef90_A0A6N7TLR7	595.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0019039_50	1504822.CCNO01000013_gene286	112.0	3.54e-24	cell adhesion	N/A
Pfam	UHGV-0019039_50	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0019039_50	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019039_50	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0019039_51	K03427	154.7	1.4013e-45	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0019039_51	phrog_6380	358.3	0	DNA methyltransferase	other
UniRef90	UHGV-0019039_51	UniRef90_UPI0011DC86C4	566.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0019039_51	1444306.JFZC01000034_gene2643	338.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0019039_51	MTase_I_00005	104.1	1.5e-30	Type I methyltransferase	RM
Pfam	UHGV-0019039_51	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0019039_51	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0019039_51	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_52	phrog_64	123.9	4.6e-37	portal protein	head and packaging
UniRef90	UHGV-0019039_52	UniRef90_A0A6N7TNT3	508.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0019039_52	1423754.BALY01000011_gene289	76.6	0.00000000000396	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0019039_52	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0019039_52	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0019039_53	K06909	336.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0019039_53	phrog_3717	130.3	1.2e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0019039_53	UniRef90_A0A1Y4ES07	497.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0019039_53	665956.HMPREF1032_02957	461.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0019039_53	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
Pfam	UHGV-0019039_53	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0019039_53	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0019039_53	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0019039_53	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019039_53	PF04466,PF16677,PF17289,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_54	phrog_36	56.3	5.7e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0019039_54	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_55	phrog_9298	315.2	0	radical SAM domain protein	other
UniRef90	UHGV-0019039_55	UniRef90_A0A6L5TFB3	590.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-0019039_55	1235798.C817_03186	332.0	0	N/A	N/A
COG	UHGV-0019039_55	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0019039_55	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
KOfam	UHGV-0019039_56	K01160	60.4	5.4e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0019039_56	phrog_34	62.2	1e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019039_56	UniRef90_A0A6N7TND6	214.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0019039_56	796940.HMPREF9628_00163	133.0	1.99e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0019039_56	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0019039_56	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0019039_56	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_57	phrog_424	87.8	1.1e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0019039_57	445972.ANACOL_01819	438.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0019039_57	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0019039_57	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019039_59	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019039_60	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0019039_61	K02086	65.3	7.5e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-0019039_61	phrog_186	73.0	3.3e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019039_61	UniRef90_A0A6N7TLH4	254.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0019039_61	877411.JMMA01000002_gene2292	68.9	0.0000000000739	N/A	N/A
Pfam	UHGV-0019039_61	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0019039_61	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0019039_61	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0019039_61	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0019039_62	K03111	148.6	6.02558e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0019039_62	phrog_44	145.4	2.60642e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019039_62	UniRef90_D4K451	269.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0019039_62	718252.FP2_06770	269.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0019039_62	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0019039_62	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0019039_62	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0019039_62	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0019039_62	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_63	phrog_561	113.5	1.8e-33	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019039_63	UniRef90_UPI0011C8A287	147.0	1.28e-40	recombinase RecT	N/A
eggNOG-mapper	UHGV-0019039_63	33035.JPJF01000071_gene4462	146.0	4.54007e-41	N/A	N/A
structural_annotation	UHGV-0019039_63	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019039_68	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0019039_69	phrog_27197	88.5	2.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0019039_69	394503.Ccel_3068	64.3	0.0000000000327	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0019039_69	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0019039_69	NF007410	N/A	N/A	N/A	N/A