UHGV-0019104 (vOTU-031207)

Viral Genome: UHGV-0019104

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0019104
vOTU ID	vOTU-031207
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_6_1152__NODE_6005_length_17514_cov_6.022653
Associated BioSample	SAMEA4765612
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.32 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.34
Jumbo phage	No

Genome content
Genome length (bp)	17,514
GC content	43.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	20
CDS density	95%
Average CDS length (bps)	832.35
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0019104_1	phrog_443	49.7	0.000000000000099	holin	lysis
UniRef90	UHGV-0019104_1	UniRef90_UPI0009B98E42	77.8	9.02e-18	holin	N/A
eggNOG-mapper	UHGV-0019104_1	1469948.JPNB01000002_gene3855	71.6	3.96e-16	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0019104_1	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0019104_1	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0019104_2	K01448	69.1	3e-20	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0019104_2	phrog_435	85.6	1.8e-25	endolysin	lysis
UniRef90	UHGV-0019104_2	UniRef90_A0A810PUG7	83.2	0.00000000000000304	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0019104_2	1121087.AUCK01000031_gene3097	57.4	0.00000206	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-0019104_2	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0019104_2	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-0019104_3	phrog_1863	75.1	5.2e-23	N/A	unknown function
UniRef90	UHGV-0019104_3	UniRef90_UPI001F223E8B	110.0	5.75e-30	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0019104_3	1226322.HMPREF1545_04027	79.3	1.45e-18	N/A	N/A
PHROG	UHGV-0019104_4	phrog_9680	71.2	9e-21	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0019104_4	1262449.CP6013_3213	67.0	0.0000000306	Phage minor structural protein	N/A
COG	UHGV-0019104_4	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0019104_5	phrog_1194	44.2	0.000000000003	N/A	unknown function
PHROG	UHGV-0019104_6	phrog_31409	189.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0019104_6	562981.HMPREF0428_01811	151.0	1.46e-34	phage tail tape measure protein	N/A
COG	UHGV-0019104_6	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0019104_6	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0019104_7	phrog_706	93.4	2.6e-27	N/A	unknown function
UniRef90	UHGV-0019104_7	UniRef90_UPI00189B451E	137.0	2.03e-37	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0019104_7	411459.RUMOBE_01383	145.0	1.63994e-41	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0019104_7	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0019104_7	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019104_8	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0019104_9	phrog_3099	63.7	3.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0019104_9	665956.HMPREF1032_03060	139.0	1.11e-39	N/A	N/A
structural_annotation	UHGV-0019104_9	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
Pfam	UHGV-0019104_10	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0019104_10	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019104_11	PF16724	N/A	N/A	N/A	N/A
PHROG	UHGV-0019104_12	phrog_3366	49.6	0.000000000000076	N/A	unknown function
structural_annotation	UHGV-0019104_12	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0019104_13	phrog_541	58.5	1.2e-16	head-tail adaptor	connector
PHROG	UHGV-0019104_14	phrog_422	245.5	0	major head protein	head and packaging
UniRef90	UHGV-0019104_14	UniRef90_W0U896	408.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0019104_14	1160721.RBI_II00538	408.0	0	N/A	N/A
structural_annotation	UHGV-0019104_14	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0019104_17	phrog_581	156.9	0	minor head protein	head and packaging
UniRef90	UHGV-0019104_17	UniRef90_A0A136WBX5	200.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0019104_17	1449050.JNLE01000003_gene3892	152.0	5.74e-38	Phage minor capsid protein 2	N/A
Pfam	UHGV-0019104_17	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0019104_17	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019104_17	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0019104_18	phrog_533	86.0	2.8e-25	portal protein	head and packaging
structural_annotation	UHGV-0019104_18	PF05133,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0019104_19	K06909	88.9	6.8e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0019104_19	phrog_2	109.1	6.9e-32	terminase large subunit	head and packaging
UniRef90	UHGV-0019104_19	UniRef90_A0A0X8VA91	405.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0019104_19	1449050.JNLE01000003_gene3895	313.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0019104_19	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0019104_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019104_19	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A