UHGV-0019185 (vOTU-137843)

Viral Genome: UHGV-0019185

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0019185
vOTU ID	vOTU-137843
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_C_4_1831__NODE_6512_length_17325_cov_9.045628
Associated BioSample	SAMEA4766064
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.74 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9831
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.58
Jumbo phage	No

Genome content
Genome length (bp)	17,325
GC content	61.32%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	21
CDS density	98%
Average CDS length (bps)	807.86
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0019185_1	K01448	51.9	0.000000000000011	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0019185_1	phrog_435	71.7	1.3e-20	endolysin	lysis
UniRef90	UHGV-0019185_1	UniRef90_A0A810PUG7	210.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0019185_1	411473.RUMCAL_02267	101.0	2.21e-23	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0019185_1	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0019185_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0019185_1	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_2	phrog_881	90.0	1.2e-26	holin	lysis
UniRef90	UHGV-0019185_2	UniRef90_UPI00189D3A4F	84.7	5.22e-20	phage holin	N/A
eggNOG-mapper	UHGV-0019185_2	742740.HMPREF9474_02251	82.0	1.13e-19	Putative phage holin Dp-1	N/A
Pfam	UHGV-0019185_2	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0019185_2	PF16938,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_3	phrog_4105	99.4	2.3e-29	N/A	unknown function
UniRef90	UHGV-0019185_3	UniRef90_A0A8D9UHA9	140.0	3.20001e-41	Holin protein	N/A
eggNOG-mapper	UHGV-0019185_3	742733.HMPREF9469_05011	117.0	5.98e-33	N/A	N/A
PHROG	UHGV-0019185_4	phrog_31398	40.2	0.000000000027	N/A	unknown function
eggNOG-mapper	UHGV-0019185_4	1408437.JNJN01000002_gene1389	63.2	0.0000000541	N/A	N/A
structural_annotation	UHGV-0019185_4	PF10651,TIGR02059	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_5	phrog_1067	275.5	0	minor head protein	head and packaging
UniRef90	UHGV-0019185_5	UniRef90_A0A316NPB5	389.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019185_5	1123263.AUKY01000068_gene489	296.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0019185_5	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0019185_5	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0019185_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0019185_5	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_6	phrog_33	72.4	1.1e-20	distal tail protein Dit	tail
UniRef90	UHGV-0019185_6	UniRef90_A0A173Z1X4	183.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0019185_6	536233.CLO_0897	90.1	4.1e-19	tail component	N/A
COG	UHGV-0019185_6	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0019185_6	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_7	phrog_6900	245.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0019185_7	1121334.KB911068_gene2299	298.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0019185_7	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0019185_7	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_10	phrog_88	89.9	2.9e-26	major tail protein	tail
UniRef90	UHGV-0019185_10	UniRef90_G9YSC5	124.0	3.6e-32	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0019185_10	33035.JPJF01000039_gene278	66.2	0.000000000109	N/A	N/A
NCBIFam	UHGV-0019185_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0019185_10	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_11	phrog_5	42.8	0.000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-0019185_11	UniRef90_R6UNR2	131.0	4.03e-36	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0019185_11	908340.HMPREF9406_2573	131.0	6.76e-37	N/A	N/A
NCBIFam	UHGV-0019185_11	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0019185_11	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019185_12	1235798.C817_04588	87.0	1.22e-20	N/A	N/A
structural_annotation	UHGV-0019185_12	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_13	phrog_19734	115.7	2.8e-34	N/A	unknown function
UniRef90	UHGV-0019185_13	UniRef90_A0A0D8I708	97.8	6.92e-24	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0019185_13	1235798.C817_04587	54.7	0.000000072	N/A	N/A
structural_annotation	UHGV-0019185_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_14	phrog_749	69.9	3.2e-20	N/A	unknown function
UniRef90	UHGV-0019185_14	UniRef90_UPI001C0FB8A8	52.8	0.000000786	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0019185_14	349161.Dred_2603	78.2	1.8e-17	N/A	N/A
PHROG	UHGV-0019185_15	phrog_10	150.4	9.80909e-45	major head protein	head and packaging
UniRef90	UHGV-0019185_15	UniRef90_G9YSC0	677.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0019185_15	1235792.C808_00086	428.0	0	Phage capsid family	N/A
Pfam	UHGV-0019185_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0019185_15	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0019185_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0019185_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0019185_15	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0019185_16	K01358	132.1	5.9e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0019185_16	phrog_94	246.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0019185_16	UniRef90_A0A1Y4BT12	354.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0019185_16	349161.Dred_2605	307.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0019185_16	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0019185_16	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0019185_16	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_17	phrog_12	119.6	1.2e-35	portal protein	head and packaging
UniRef90	UHGV-0019185_17	UniRef90_G9YSB8	508.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0019185_17	610130.Closa_0742	296.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0019185_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0019185_17	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0019185_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0019185_17	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_18	phrog_9	241.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0019185_18	UniRef90_A0A6I7GGF0	897.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0019185_18	1235792.C808_00083	603.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0019185_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0019185_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0019185_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0019185_18	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0019185_19	phrog_5110	60.8	1.5e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0019185_19	UniRef90_UPI00195E8788	124.0	3.43e-33	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0019185_19	1265845.PWEIH_00610	52.0	0.0000039	Phage terminase, small subunit	N/A
Pfam	UHGV-0019185_19	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0019185_19	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0019185_20	K07319	125.6	3.9e-37	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0019185_20	phrog_498	246.9	0	DNA methyltransferase	other
UniRef90	UHGV-0019185_20	UniRef90_A0A810Q3Z7	354.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0019185_20	742823.HMPREF9465_00225	256.0	0	PFAM DNA methylase N-4 N-6	N/A
PADLOC	UHGV-0019185_20	MTase_II_00015	218.3	0	Type II methyltransferase	RM
Pfam	UHGV-0019185_20	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0019185_20	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0019185_20	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0019185_21	K03497	46.9	0.00000000000057	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0019185_21	phrog_498	163.0	0	DNA methyltransferase	other
UniRef90	UHGV-0019185_21	UniRef90_A0A810PZK9	269.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0019185_21	1423758.BN55_01455	157.0	3.78351e-44	DNA methylase	N/A
PADLOC	UHGV-0019185_21	MTase_II_00015	113.6	2.1e-33	Type II methyltransferase	RM
Pfam	UHGV-0019185_21	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0019185_21	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0019185_21	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A