UHGV-0019213 (vOTU-005816)

Viral Genome: UHGV-0019213

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0019213
vOTU ID	vOTU-005816
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_J_22_1662__NODE_2788_length_38859_cov_87.572405
Associated BioSample	SAMEA4765942
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.04
Jumbo phage	No

Genome content
Genome length (bp)	38,782
GC content	54.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	93%
Average CDS length (bps)	614.29
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0019213_1	phrog_1194	48.9	0.000000000000086	N/A	unknown function
eggNOG-mapper	UHGV-0019213_1	411471.SUBVAR_06933	113.0	5.03e-31	N/A	N/A
PHROG	UHGV-0019213_2	phrog_1535	115.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0019213_2	1304866.K413DRAFT_3046	115.0	4.42e-23	N/A	N/A
COG	UHGV-0019213_2	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0019213_3	phrog_706	109.3	3.1e-32	N/A	unknown function
UniRef90	UHGV-0019213_3	UniRef90_UPI00195A437B	184.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0019213_3	1226322.HMPREF1545_00058	159.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0019213_3	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0019213_3	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_4	phrog_11299	55.0	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0019213_4	1226322.HMPREF1545_00057	100.0	2.58e-25	N/A	N/A
structural_annotation	UHGV-0019213_4	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_5	phrog_3099	133.4	1.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-0019213_5	33035.JPJF01000106_gene3126	213.0	0	N/A	N/A
structural_annotation	UHGV-0019213_5	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_6	phrog_3266	79.0	5.1e-23	tail completion	connector
eggNOG-mapper	UHGV-0019213_6	476272.RUMHYD_01781	139.0	7.66999e-40	N/A	N/A
structural_annotation	UHGV-0019213_6	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_7	phrog_556	48.8	0.000000000000013	minor head protein	head and packaging
UniRef90	UHGV-0019213_7	UniRef90_UPI0008B4CFF0	152.0	3.50325e-44	minor capsid protein	N/A
eggNOG-mapper	UHGV-0019213_7	476272.RUMHYD_01780	152.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0019213_7	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_8	phrog_3366	80.5	2.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0019213_8	476272.RUMHYD_01779	124.0	2.09e-34	N/A	N/A
structural_annotation	UHGV-0019213_8	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_9	phrog_541	70.2	2.5e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0019213_9	1235790.C805_00076	114.0	8.18e-30	N/A	N/A
PHROG	UHGV-0019213_10	phrog_544	181.6	0	major head protein	head and packaging
UniRef90	UHGV-0019213_10	UniRef90_A0A810PZM2	386.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0019213_10	1347392.CCEZ01000005_gene1236	244.0	0	N/A	N/A
structural_annotation	UHGV-0019213_10	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_11	phrog_194	71.8	1.3e-20	head scaffolding protein	head and packaging
UniRef90	UHGV-0019213_11	UniRef90_UPI001D14C9C8	128.0	1.31e-33	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0019213_11	476272.RUMHYD_01775	145.0	6.40001e-41	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0019213_11	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0019213_12	phrog_28802	69.1	7.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0019213_12	476272.RUMHYD_01772	75.9	0.00000000000000418	N/A	N/A
PHROG	UHGV-0019213_13	phrog_20016	181.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0019213_13	397290.C810_05214	115.0	5.14e-31	N/A	N/A
structural_annotation	UHGV-0019213_13	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_14	phrog_16490	175.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0019213_14	658655.HMPREF0988_00917	188.0	0	N/A	N/A
PHROG	UHGV-0019213_15	phrog_22984	103.0	1.6e-30	N/A	unknown function
PHROG	UHGV-0019213_16	phrog_21718	100.5	1.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-0019213_16	397290.C810_05210	96.7	3.23e-23	N/A	N/A
eggNOG-mapper	UHGV-0019213_17	1235790.C805_00057	55.8	0.00000000118	N/A	N/A
structural_annotation	UHGV-0019213_17	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_18	phrog_3754	102.1	3.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0019213_18	476272.RUMHYD_01764	161.0	0	N/A	N/A
PHROG	UHGV-0019213_19	phrog_3675	105.0	3.4e-31	N/A	unknown function
UniRef90	UHGV-0019213_19	UniRef90_UPI001C02868E	132.0	6.65e-38	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0019213_19	1235799.C818_04221	132.0	5.21e-39	YjcQ protein	N/A
Pfam	UHGV-0019213_19	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0019213_19	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019213_20	1064535.MELS_1696	79.7	1.06e-18	N/A	N/A
structural_annotation	UHGV-0019213_20	PF20111	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_21	phrog_581	318.1	0	minor head protein	head and packaging
UniRef90	UHGV-0019213_21	UniRef90_A0A412EKN3	380.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0019213_21	476272.RUMHYD_01761	331.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0019213_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0019213_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019213_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_22	phrog_533	269.4	0	portal protein	head and packaging
UniRef90	UHGV-0019213_22	UniRef90_A0A1C5MB20	558.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0019213_22	33035.JPJF01000106_gene3135	455.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0019213_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0019213_23	K06909	392.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0019213_23	phrog_3717	150.0	1.12104e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0019213_23	UniRef90_A0A416S378	659.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0019213_23	33035.JPJF01000106_gene3136	504.0	0	Terminase small subunit	N/A
Pfam	UHGV-0019213_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0019213_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0019213_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0019213_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019213_23	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019213_24	693746.OBV_25230	144.0	2.83062e-42	N/A	N/A
structural_annotation	UHGV-0019213_24	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_25	phrog_6568	60.6	2.1e-17	N/A	unknown function
PHROG	UHGV-0019213_26	phrog_5781	102.5	3.9e-30	N/A	unknown function
UniRef90	UHGV-0019213_26	UniRef90_A0A7G5NUL0	107.0	1.51e-28	N/A	N/A
eggNOG-mapper	UHGV-0019213_26	573061.Clocel_3558	95.9	2.12e-24	N/A	N/A
Pfam	UHGV-0019213_26	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0019213_26	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0019213_26	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_33	phrog_9298	75.2	4.2e-22	radical SAM domain protein	other
UniRef90	UHGV-0019213_33	UniRef90_A0A841L4D7	266.0	0	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	N/A
eggNOG-mapper	UHGV-0019213_33	742738.HMPREF9460_03770	250.0	0	radical SAM domain protein	N/A
COG	UHGV-0019213_33	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0019213_33	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_34	phrog_757	181.8	0	DNA methyltransferase	other
UniRef90	UHGV-0019213_34	UniRef90_A0A417JTT5	228.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0019213_34	1095750.HMPREF9970_0173	235.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0019213_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0019213_34	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_35	phrog_4433	86.5	3.5e-25	N/A	unknown function
UniRef90	UHGV-0019213_35	UniRef90_UPI001C00F934	65.5	0.000000000175	pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-0019213_35	445970.ALIPUT_01592	110.0	6.07e-26	DNA-templated transcription, initiation	N/A
COG	UHGV-0019213_35	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
PHROG	UHGV-0019213_36	phrog_8489	112.6	5.5e-33	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019213_36	UniRef90_UPI000AB3B1F8	103.0	5.59e-23	replisome organizer	N/A
eggNOG-mapper	UHGV-0019213_36	1391647.AVSV01000022_gene2531	99.8	8.89e-22	DnaD domain protein	N/A
COG	UHGV-0019213_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0019213_36	PF07261,PF09681,TIGR01446,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0019213_37	K06167	59.4	5.4e-17	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0019213_37	phrog_392	185.3	0	metal-dependent hydrolase	other
UniRef90	UHGV-0019213_37	UniRef90_UPI00195A5026	285.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0019213_37	1203606.HMPREF1526_00311	194.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0019213_37	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0019213_37	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0019213_37	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_38	phrog_862	51.7	0.000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0019213_38	1203606.HMPREF1526_00310	118.0	1.58e-30	N/A	N/A
structural_annotation	UHGV-0019213_38	PF05037,COG2965	N/A	N/A	N/A	N/A
KOfam	UHGV-0019213_39	K19171	104.5	6.3e-31	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0019213_39	phrog_77	215.5	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019213_39	UniRef90_UPI001959E3D8	455.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0019213_39	1382358.JHVN01000024_gene1691	350.0	0	N/A	N/A
Pfam	UHGV-0019213_39	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0019213_39	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0019213_39	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_40	phrog_1029	157.6	0	N/A	unknown function
UniRef90	UHGV-0019213_40	UniRef90_A0A3D5WKT6	112.0	9.31e-27	Peptidase S59 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019213_40	552398.HMPREF0866_01625	132.0	6.04e-35	N/A	N/A
structural_annotation	UHGV-0019213_40	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_41	phrog_997	114.6	6e-34	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019213_41	UniRef90_R6MCS9	105.0	8.84e-27	N/A	N/A
eggNOG-mapper	UHGV-0019213_41	1203606.HMPREF1526_01889	134.0	3.29e-39	replication terminator protein, phage associated	N/A
structural_annotation	UHGV-0019213_44	PF20432,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0019213_47	K22300	49.2	0.00000000000011	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0019213_47	phrog_2328	45.0	0.0000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-0019213_47	UniRef90_UPI0013DE7A28	116.0	6.06e-31	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0019213_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019213_47	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0019213_47	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0019213_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0019213_50	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_51	phrog_9418	129.6	1.3e-38	N/A	unknown function
UniRef90	UHGV-0019213_51	UniRef90_A0A0K9GC48	148.0	9.10844e-44	Membrane protein	N/A
eggNOG-mapper	UHGV-0019213_51	357809.Cphy_0509	130.0	1.72e-37	N/A	N/A
KOfam	UHGV-0019213_52	K14059	151.4	9.80909e-45	int; integrase	N/A
PHROG	UHGV-0019213_52	phrog_1	150.9	9.80909e-45	integrase	integration and excision
UniRef90	UHGV-0019213_52	UniRef90_A0A3D2HVQ9	388.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0019213_52	1226322.HMPREF1545_00144	130.0	2.92e-32	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0019213_52	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019213_52	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019213_52	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_54	phrog_10091	101.4	7.1e-30	holin	lysis
UniRef90	UHGV-0019213_54	UniRef90_A0A1Y4C1U2	131.0	3.34e-38	Phage holin	N/A
eggNOG-mapper	UHGV-0019213_54	97139.C824_05950	119.0	2.9e-34	Bacteriophage holin	N/A
Pfam	UHGV-0019213_54	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0019213_54	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0019213_54	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019213_54	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_55	phrog_937	56.4	6.1e-16	hemolysin	other
KOfam	UHGV-0019213_56	K01448	80.3	2.6e-23	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0019213_56	phrog_435	103.2	3.4e-30	endolysin	lysis
UniRef90	UHGV-0019213_56	UniRef90_A0A810PUG7	202.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0019213_56	697281.Mahau_0598	116.0	8.57e-29	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0019213_56	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0019213_56	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0019213_56	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0019213_57	phrog_32311	54.0	0.0000000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0019213_57	478749.BRYFOR_08510	93.2	5.58e-18	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-0019213_57	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
COG	UHGV-0019213_57	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0019213_58	phrog_372	208.9	0	tail protein	tail
UniRef90	UHGV-0019213_58	UniRef90_R7FHU8	186.0	0	Tail protein	N/A
eggNOG-mapper	UHGV-0019213_58	1235802.C823_05263	107.0	1.94e-21	N/A	N/A
Pfam	UHGV-0019213_58	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0019213_58	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0019213_59	phrog_18190	76.9	8.2e-29	N/A	unknown function
UniRef90	UHGV-0019213_59	UniRef90_A0A2T3F0G0	87.4	0.0000000000000172	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019213_59	411471.SUBVAR_06932	230.0	0	N/A	N/A