UHGV-0019242 (vOTU-043103)

Viral Genome: UHGV-0019242

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0019242
vOTU ID	vOTU-043103
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_6_1152__NODE_2417_length_38500_cov_14.041928
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.16
Jumbo phage	No

Genome content
Genome length (bp)	38,477
GC content	58.55%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	94%
Average CDS length (bps)	685.76
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0019242_1	1519439.JPJG01000011_gene53	97.4	2.89e-17	N/A	N/A
Pfam	UHGV-0019242_1	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-0019242_2	1410650.JHWL01000003_gene2815	124.0	4.49e-29	N/A	N/A
KOfam	UHGV-0019242_3	K07584	53.2	0.0000000000000062	N/A	N/A
PHROG	UHGV-0019242_3	phrog_4478	51.4	0.000000000000014	peptidase	other
UniRef90	UHGV-0019242_3	UniRef90_R5J236	72.8	0.0000000000000303	Putative ribosomal protein	N/A
Pfam	UHGV-0019242_3	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0019242_3	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019242_3	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0019242_4	phrog_156	289.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0019242_4	1410650.JHWL01000003_gene2833	476.0	0	N/A	N/A
structural_annotation	UHGV-0019242_4	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0019242_5	K06909	142.3	4.19969e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0019242_5	phrog_979	144.9	2.66247e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0019242_5	UniRef90_A0A3C0NMI6	688.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0019242_5	1410650.JHWL01000003_gene2834	564.0	0	N/A	N/A
Pfam	UHGV-0019242_5	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0019242_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019242_5	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0019242_6	K07474	93.5	4.6e-27	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0019242_6	phrog_51	99.4	3.3e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0019242_6	UniRef90_A0A084JIB8	97.8	1.12e-23	Terminase	N/A
eggNOG-mapper	UHGV-0019242_6	318464.IO99_00540	97.8	1.88e-24	Terminase small subunit	N/A
Pfam	UHGV-0019242_6	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0019242_6	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0019242_6	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0019242_9	K07726	46.0	0.00000000000086	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0019242_9	phrog_2104	40.1	0.00000000006	N/A	unknown function
UniRef90	UHGV-0019242_9	UniRef90_X8K268	63.2	0.00000000000694	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0019242_9	888727.HMPREF9092_0491	63.2	0.00000000000116	Helix-turn-helix	N/A
Pfam	UHGV-0019242_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019242_9	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
PHROG	UHGV-0019242_13	phrog_3584	169.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0019242_13	1226322.HMPREF1545_03841	268.0	0	N/A	N/A
structural_annotation	UHGV-0019242_13	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0019242_18	phrog_23224	131.9	2.3e-39	DNA methyltransferase	other
UniRef90	UHGV-0019242_18	UniRef90_A0A2V2GM11	281.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0019242_18	718252.FP2_06750	280.0	0	DNA methylase	N/A
COG	UHGV-0019242_18	COG0863	N/A	N/A	DNA modification methylase	N/A
PHROG	UHGV-0019242_21	phrog_824	160.1	0	N/A	unknown function
UniRef90	UHGV-0019242_21	UniRef90_A0A6N8GXS9	157.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0019242_21	665956.HMPREF1032_00132	134.0	2.14e-38	VRR_NUC	N/A
Pfam	UHGV-0019242_21	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0019242_23	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019242_24	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0019242_30	K22300	52.9	0.000000000000009	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0019242_30	phrog_8	43.6	0.0000000000058	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019242_30	UniRef90_A0A1C6CFH8	105.0	1.71e-26	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
eggNOG-mapper	UHGV-0019242_30	903814.ELI_1263	97.1	4.81e-24	Helix-turn-helix domain	N/A
Pfam	UHGV-0019242_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019242_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0019242_30	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019242_32	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0019242_33	K14059	108.6	9.3e-32	int; integrase	N/A
PHROG	UHGV-0019242_33	phrog_1	111.3	1.1e-32	integrase	integration and excision
UniRef90	UHGV-0019242_33	UniRef90_A0A3D2G173	342.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0019242_33	742738.HMPREF9460_01344	121.0	2.58e-28	Phage integrase family	N/A
Pfam	UHGV-0019242_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019242_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019242_33	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019242_34	1378168.N510_03079	104.0	1.07e-24	N/A	N/A
eggNOG-mapper	UHGV-0019242_35	1408437.JNJN01000043_gene802	150.0	2.8026e-45	N/A	N/A
PHROG	UHGV-0019242_36	phrog_16490	127.8	9e-38	N/A	unknown function
eggNOG-mapper	UHGV-0019242_36	1408437.JNJN01000043_gene803	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0019242_38	445972.ANACOL_01878	50.8	0.00000379	N/A	N/A
UniRef90	UHGV-0019242_39	UniRef90_A0A1C6JAI6	67.8	0.00000000000043	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0019242_39	PF16509,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0019242_40	phrog_881	67.3	1.6e-19	holin	lysis
UniRef90	UHGV-0019242_40	UniRef90_A0A8D9PDR9	79.0	6.76e-18	Holin	N/A
eggNOG-mapper	UHGV-0019242_40	476272.RUMHYD_01966	75.1	4.09e-17	Putative phage holin Dp-1	N/A
Pfam	UHGV-0019242_40	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0019242_40	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0019242_41	phrog_937	48.1	0.00000000000023	hemolysin	other
eggNOG-mapper	UHGV-0019242_41	1297617.JPJD01000099_gene2176	78.6	8.3e-18	N/A	N/A
PHROG	UHGV-0019242_42	phrog_20388	90.4	1.8e-26	endolysin	lysis
UniRef90	UHGV-0019242_42	UniRef90_A0A2I0N350	103.0	7.34e-22	N-acetylmuramoyl-L-alanine amidase domain protein	N/A
eggNOG-mapper	UHGV-0019242_42	1121296.JONJ01000026_gene2168	105.0	4.34e-23	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0019242_42	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0019242_42	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0019242_42	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0019242_42	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0019242_43	phrog_30034	114.6	1.1e-33	N/A	unknown function
UniRef90	UHGV-0019242_43	UniRef90_R6RWR8	149.0	7.8753e-43	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-0019242_43	552398.HMPREF0866_03095	108.0	9.25e-28	N/A	N/A
Pfam	UHGV-0019242_43	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0019242_43	PF14600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019242_45	PF07210,PF01404,TIGR03000,NF038128	N/A	N/A	N/A	N/A
PHROG	UHGV-0019242_46	phrog_25979	42.9	0.0000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0019242_46	1519439.JPJG01000060_gene1892	81.6	0.000000000000102	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0019242_46	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0019242_46	PF07353,COG3979	N/A	N/A	N/A	N/A
PHROG	UHGV-0019242_48	phrog_511	228.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0019242_48	1410650.JHWL01000003_gene2827	346.0	0	N/A	N/A
structural_annotation	UHGV-0019242_48	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0019242_49	phrog_12105	91.2	9.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-0019242_49	1226322.HMPREF1545_03850	66.6	0.00000000000243	N/A	N/A
PHROG	UHGV-0019242_50	phrog_15239	60.4	2.2e-17	N/A	unknown function
PHROG	UHGV-0019242_51	phrog_1357	221.9	0	major head protein	head and packaging
UniRef90	UHGV-0019242_51	UniRef90_A0A3C0NPN1	537.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0019242_51	1410650.JHWL01000003_gene2830	245.0	0	N/A	N/A
Pfam	UHGV-0019242_51	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0019242_51	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0019242_51	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0019242_52	phrog_13908	166.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0019242_52	748224.HMPREF9436_01398	58.2	0.00000165	Cysteine protease Prp	N/A
COG	UHGV-0019242_52	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0019242_53	phrog_22978	577.5	0	N/A	unknown function
UniRef90	UHGV-0019242_53	UniRef90_UPI001C019A6F	420.0	0	OmpH family outer membrane protein	N/A
eggNOG-mapper	UHGV-0019242_53	1410650.JHWL01000003_gene2814	334.0	0	N/A	N/A
Pfam	UHGV-0019242_53	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal