UHGV-0019340 (vOTU-043111)

Viral Genome: UHGV-0019340

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0019340
vOTU ID	vOTU-043111
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_K_12_1156__NODE_1220_length_43164_cov_9.220206
Associated BioSample	SAMEA4765616
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9784
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.68
Jumbo phage	No

Genome content
Genome length (bp)	43,109
GC content	55.70%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	95%
Average CDS length (bps)	716.90
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0019340_1	phrog_22978	731.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0019340_1	1410650.JHWL01000003_gene2814	248.0	0	N/A	N/A
Pfam	UHGV-0019340_1	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
KOfam	UHGV-0019340_2	K08640	89.8	1.1e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0019340_2	phrog_2649	59.7	2.8e-19	endolysin	lysis
UniRef90	UHGV-0019340_2	UniRef90_UPI001C12323B	216.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0019340_2	903814.ELI_3889	67.8	0.0000000000229	Peptidase M15	N/A
Pfam	UHGV-0019340_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0019340_2	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0019340_2	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019340_2	PF08291,PF01471,TIGR02869,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_3	phrog_1863	58.7	5.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0019340_3	748224.HMPREF9436_00408	87.0	2.21e-21	N/A	N/A
PHROG	UHGV-0019340_4	phrog_1129	84.9	5.2e-25	holin	lysis
UniRef90	UHGV-0019340_4	UniRef90_UPI001F43F0BF	104.0	1.66e-27	phage holin family protein	N/A
eggNOG-mapper	UHGV-0019340_4	1256908.HMPREF0373_00463	94.7	1.99e-24	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0019340_4	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0019340_4	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019340_5	PF01047,MF_00620,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_6	phrog_3754	94.0	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0019340_6	476272.RUMHYD_01764	148.0	1.96182e-44	N/A	N/A
PHROG	UHGV-0019340_7	phrog_21718	76.5	3.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0019340_7	476272.RUMHYD_01768	81.3	5.33e-18	N/A	N/A
PHROG	UHGV-0019340_8	phrog_22984	66.1	4.9e-19	N/A	unknown function
PHROG	UHGV-0019340_9	phrog_16490	91.1	1.9e-27	N/A	unknown function
UniRef90	UHGV-0019340_9	UniRef90_A0A7M1RTU9	72.8	0.0000000000166	Spike protein/glycoprotein	N/A
eggNOG-mapper	UHGV-0019340_9	1408437.JNJN01000043_gene803	90.9	2.63e-19	N/A	N/A
PHROG	UHGV-0019340_10	phrog_20016	164.5	0	N/A	unknown function
UniRef90	UHGV-0019340_10	UniRef90_A0A345BPX4	147.0	1.05938e-42	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0019340_10	1226322.HMPREF1545_00077	142.0	1.76998e-41	N/A	N/A
structural_annotation	UHGV-0019340_10	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019340_11	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0019340_12	K14059	145.5	5.60519e-43	int; integrase	N/A
PHROG	UHGV-0019340_12	phrog_1	153.4	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0019340_12	UniRef90_A0A3D3Y0G6	309.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0019340_12	693746.OBV_41260	234.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0019340_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019340_12	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0019340_12	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019340_13	715451.ambt_14505	86.7	1.66e-17	N/A	N/A
Pfam	UHGV-0019340_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0019340_14	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0019340_16	K22300	44.2	0.0000000000037	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0019340_16	phrog_2967	40.5	0.000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019340_16	UniRef90_A0A3D3T8Y1	84.0	2.26e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0019340_16	1235790.C805_00012	79.7	1.44e-17	Helix-turn-helix domain	N/A
COG	UHGV-0019340_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0019340_16	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0019340_17	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0019340_17	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
KOfam	UHGV-0019340_21	K19171	78.5	2.9e-23	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0019340_21	phrog_77	216.5	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019340_21	UniRef90_A0A3A9HXV3	414.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019340_21	1203606.HMPREF1526_00309	322.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0019340_21	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0019340_21	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0019340_21	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_22	phrog_862	49.0	0.000000000000088	N/A	unknown function
eggNOG-mapper	UHGV-0019340_22	1203606.HMPREF1526_00310	126.0	1.15e-33	N/A	N/A
structural_annotation	UHGV-0019340_22	PF05037,COG2965	N/A	N/A	N/A	N/A
KOfam	UHGV-0019340_23	K06167	66.8	3e-19	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0019340_23	phrog_392	193.5	0	metal-dependent hydrolase	other
UniRef90	UHGV-0019340_23	UniRef90_UPI00195A5026	242.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0019340_23	218284.CCDN010000001_gene822	192.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0019340_23	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0019340_23	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0019340_23	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_24	phrog_8489	101.4	1.4e-29	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0019340_24	1140001.I571_01717	92.0	3.06e-20	DnaD domain protein	N/A
COG	UHGV-0019340_24	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0019340_24	PF07261,PF09681,TIGR01446,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_27	phrog_757	51.2	0.000000000000016	DNA methyltransferase	other
UniRef90	UHGV-0019340_27	UniRef90_A0A7J2R6L5	67.4	0.0000000000000607	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0019340_27	748224.HMPREF9436_03069	101.0	3.74e-26	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0019340_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0019340_28	phrog_757	94.6	8.8e-28	DNA methyltransferase	other
UniRef90	UHGV-0019340_28	UniRef90_A0A413KZI1	162.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0019340_28	742733.HMPREF9469_01835	158.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0019340_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0019340_29	phrog_9298	67.7	1.3e-19	radical SAM domain protein	other
UniRef90	UHGV-0019340_29	UniRef90_A0A1C5YXG3	283.0	0	Radical SAM superfamily	N/A
eggNOG-mapper	UHGV-0019340_29	742817.HMPREF9449_01796	275.0	0	radical SAM domain protein	N/A
COG	UHGV-0019340_29	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0019340_29	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_33	phrog_997	107.9	6.9e-32	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019340_33	UniRef90_R6MCS9	103.0	4.88e-26	N/A	N/A
eggNOG-mapper	UHGV-0019340_33	1519439.JPJG01000059_gene1910	129.0	4.52e-37	N/A	N/A
PHROG	UHGV-0019340_34	phrog_1029	235.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0019340_34	1203606.HMPREF1526_01890	228.0	0	N/A	N/A
structural_annotation	UHGV-0019340_34	PF10065,COG5532	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019340_35	UniRef90_A0A847E3M6	50.1	0.000000377	Ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-0019340_35	PF07878	N/A	N/A	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
COG	UHGV-0019340_35	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
KOfam	UHGV-0019340_39	K06909	134.6	8.5e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0019340_39	phrog_979	131.4	8.69996e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0019340_39	UniRef90_A0A3D5TIM8	622.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0019340_39	1410650.JHWL01000003_gene2834	599.0	0	N/A	N/A
Pfam	UHGV-0019340_39	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0019340_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019340_39	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_40	phrog_156	326.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0019340_40	1410650.JHWL01000003_gene2833	571.0	0	N/A	N/A
structural_annotation	UHGV-0019340_40	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0019340_41	K07584	44.7	0.0000000000022	N/A	N/A
PHROG	UHGV-0019340_41	phrog_4478	53.5	0.0000000000000028	peptidase	other
eggNOG-mapper	UHGV-0019340_41	1231377.C426_1790	55.1	0.000000046	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0019340_41	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0019340_41	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019340_41	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_42	phrog_13908	232.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0019340_42	1410650.JHWL01000003_gene2831	99.8	1.53e-21	N/A	N/A
PHROG	UHGV-0019340_43	phrog_1357	269.4	0	major head protein	head and packaging
UniRef90	UHGV-0019340_43	UniRef90_A0A2V2GQW4	380.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0019340_43	748224.HMPREF9436_02545	350.0	0	N/A	N/A
NCBIFam	UHGV-0019340_43	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0019340_43	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_44	phrog_15239	48.3	0.00000000000014	N/A	unknown function
PHROG	UHGV-0019340_45	phrog_12105	123.3	1.1e-36	N/A	unknown function
eggNOG-mapper	UHGV-0019340_45	1226322.HMPREF1545_03850	64.7	0.0000000000119	N/A	N/A
PHROG	UHGV-0019340_46	phrog_511	204.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0019340_46	1519439.JPJG01000060_gene1903	317.0	0	N/A	N/A
structural_annotation	UHGV-0019340_46	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_49	phrog_15594	44.9	0.0000000000018	N/A	unknown function
structural_annotation	UHGV-0019340_49	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_51	phrog_24103	76.8	3.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0019340_51	1118055.CAGU01000013_gene761	84.7	2.8e-17	N/A	N/A
PHROG	UHGV-0019340_52	phrog_38190	70.2	3.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0019340_52	665956.HMPREF1032_02936	127.0	5.75e-35	N/A	N/A
structural_annotation	UHGV-0019340_53	PF03425,NF038128,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0019340_55	phrog_2310	52.2	0.000000000000005	N/A	unknown function
eggNOG-mapper	UHGV-0019340_55	1151292.QEW_0364	48.5	0.000000766	N/A	N/A
UniRef90	UHGV-0019340_56	UniRef90_R5DCX9	134.0	3.62e-33	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019340_56	1203606.HMPREF1526_02741	82.0	0.00000000000000506	N/A	N/A
PHROG	UHGV-0019340_57	phrog_22978	64.4	4.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-0019340_57	1226322.HMPREF1545_00787	99.8	6.7e-18	N/A	N/A
Pfam	UHGV-0019340_57	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C