UHGV-0019359 (vOTU-043115)

Viral Genome: UHGV-0019359

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0019359
vOTU ID	vOTU-043115
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_K_12_1156__NODE_1269_length_42079_cov_35.246274
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.34
Jumbo phage	No

Genome content
Genome length (bp)	42,002
GC content	42.21%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	95%
Average CDS length (bps)	552.29
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0019359_4	K10421	41.1	0.000000000011	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
eggNOG-mapper	UHGV-0019359_4	1131462.DCF50_p1798	175.0	3.83998e-41	N/A	N/A
PHROG	UHGV-0019359_5	phrog_4105	80.0	2.1e-23	N/A	unknown function
UniRef90	UHGV-0019359_5	UniRef90_A0A8D9UHA9	67.8	0.00000000000153	Holin protein	N/A
eggNOG-mapper	UHGV-0019359_5	428125.CLOLEP_01431	76.3	1.63e-16	N/A	N/A
PHROG	UHGV-0019359_6	phrog_443	53.9	0.0000000000000047	holin	lysis
UniRef90	UHGV-0019359_6	UniRef90_A0A1I1Y2T2	89.7	2.43e-22	Phage r1t holin	N/A
eggNOG-mapper	UHGV-0019359_6	1469948.JPNB01000002_gene3855	86.3	9.62e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0019359_6	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0019359_6	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0019359_7	K01448	116.1	3.5e-34	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0019359_7	phrog_435	169.5	0	endolysin	lysis
UniRef90	UHGV-0019359_7	UniRef90_B0MAM2	205.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0019359_7	411490.ANACAC_00597	205.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-0019359_7	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0019359_7	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0019359_7	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019359_8	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_9	phrog_21718	56.5	4.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0019359_9	476272.RUMHYD_01768	68.2	0.000000000000653	N/A	N/A
structural_annotation	UHGV-0019359_12	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019359_13	1408437.JNJN01000043_gene801	59.3	0.00000001	N/A	N/A
KOfam	UHGV-0019359_14	K14059	201.9	0	int; integrase	N/A
PHROG	UHGV-0019359_14	phrog_1	196.7	0	integrase	integration and excision
UniRef90	UHGV-0019359_14	UniRef90_A0A858BPV1	271.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0019359_14	397290.C810_00805	260.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0019359_14	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0019359_14	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0019359_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019359_14	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019359_14	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-0019359_15	COG1404	N/A	N/A	Serine protease, subtilisin family	N/A
PHROG	UHGV-0019359_17	phrog_8	50.5	0.000000000000045	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019359_17	UniRef90_UPI000BA57F70	79.7	1.57e-16	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0019359_17	1285586.H131_11663	66.6	0.00000000000192	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0019359_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0019359_21	phrog_8	45.2	0.0000000000018	transcriptional regulator	transcription regulation
Pfam	UHGV-0019359_21	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0019359_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0019359_22	phrog_989	81.4	5.3e-24	N/A	unknown function
UniRef90	UHGV-0019359_22	UniRef90_A0A7V7UB01	73.9	3.37e-16	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0019359_22	1540257.JQMW01000013_gene708	70.1	0.00000000000000159	N/A	N/A
KOfam	UHGV-0019359_23	K08309	49.9	0.000000000000035	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-0019359_23	phrog_19349	148.6	2.66247e-44	N/A	unknown function
UniRef90	UHGV-0019359_23	UniRef90_UPI000DE563D6	139.0	2.77e-38	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0019359_23	1120746.CCNL01000011_gene1661	120.0	2.24e-31	lytic transglycosylase activity	N/A
Pfam	UHGV-0019359_23	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0019359_23	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0019359_23	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_26	phrog_8489	259.7	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019359_26	UniRef90_A0A174X4J3	237.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-0019359_26	1139219.I569_00860	195.0	0	DnaD domain protein	N/A
COG	UHGV-0019359_26	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0019359_26	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_27	phrog_9804	119.9	1.9e-35	N/A	unknown function
UniRef90	UHGV-0019359_27	UniRef90_A0A1C5T9U7	171.0	0	Loader and inhibitor of phage G40P	N/A
eggNOG-mapper	UHGV-0019359_27	585394.RHOM_14005	118.0	3.01e-31	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-0019359_27	cluster_137185	114.0	1.4e-34	NA	N/A
Pfam	UHGV-0019359_27	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0019359_27	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_28	phrog_2113	58.6	7e-17	N/A	unknown function
PHROG	UHGV-0019359_30	phrog_155	90.7	1.8e-26	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019359_30	UniRef90_UPI0018AC33A4	200.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0019359_30	1497679.EP56_08440	84.0	6.54e-17	ERF superfamily	N/A
Pfam	UHGV-0019359_30	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0019359_30	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_31	phrog_674	136.6	2.79993e-41	N/A	unknown function
UniRef90	UHGV-0019359_31	UniRef90_A0A6N7XHF2	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-0019359_31	1095750.HMPREF9970_1676	150.0	1.73004e-41	N/A	N/A
Pfam	UHGV-0019359_31	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0019359_31	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_32	phrog_7370	69.3	4.3e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019359_32	UniRef90_A0A498CPV0	135.0	3.74e-39	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0019359_32	358681.BBR47_35660	55.1	0.0000000323	HNH endonuclease	N/A
Pfam	UHGV-0019359_32	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0019359_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0019359_33	phrog_72	69.6	3.4e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019359_33	UniRef90_A0A8D9PDS2	124.0	1.1e-32	NinB protein	N/A
eggNOG-mapper	UHGV-0019359_33	1507.HMPREF0262_00432	115.0	2.45e-30	N/A	N/A
structural_annotation	UHGV-0019359_33	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_35	phrog_25385	52.5	0.0000000000000073	N/A	unknown function
eggNOG-mapper	UHGV-0019359_35	718252.FP2_16450	52.4	0.000000389	N/A	N/A
KOfam	UHGV-0019359_36	K03111	135.9	4.2e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0019359_36	phrog_44	127.3	1.2e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019359_36	UniRef90_A0A645FRU2	167.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0019359_36	1321814.HMPREF9089_01469	160.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0019359_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0019359_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0019359_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0019359_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0019359_36	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_40	phrog_21026	56.8	4.2e-16	N/A	unknown function
structural_annotation	UHGV-0019359_40	NF037951	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_41	phrog_21026	43.9	0.0000000000031	N/A	unknown function
PHROG	UHGV-0019359_45	phrog_20593	47.1	0.00000000000032	N/A	unknown function
structural_annotation	UHGV-0019359_45	PF07870,TIGR02501	N/A	N/A	N/A	N/A
Pfam	UHGV-0019359_47	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0019359_48	phrog_10714	49.7	0.000000000000054	N/A	unknown function
PHROG	UHGV-0019359_49	phrog_1770	110.1	1.7e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019359_49	UniRef90_A0A7V9HWC2	98.2	3.05e-23	Crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0019359_49	1115515.EV102420_06_00190	80.9	2.66e-17	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-0019359_49	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-0019359_49	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_51	phrog_36	52.6	0.000000000000008	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0019359_51	PF05263,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019359_52	UniRef90_W1I7V7	48.5	0.00000647	Uncultured bacterium plasmid pRGF00143	N/A
structural_annotation	UHGV-0019359_54	PF09392	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_57	phrog_38	349.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0019359_57	UniRef90_A0A845QMQ7	588.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0019359_57	755731.Clo1100_2438	443.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0019359_57	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0019359_57	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0019359_57	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0019359_57	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019359_57	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_59	phrog_156	104.0	2.7e-31	portal protein	head and packaging
eggNOG-mapper	UHGV-0019359_59	1232449.BAHV02000016_gene1822	394.0	0	N/A	N/A
structural_annotation	UHGV-0019359_59	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_61	phrog_267	101.2	1e-29	major head protein	head and packaging
UniRef90	UHGV-0019359_61	UniRef90_A0A4R3KBP0	150.0	1.48e-40	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0019359_61	665956.HMPREF1032_03906	251.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-0019359_61	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019359_62	PF07100,COG4288	N/A	N/A	N/A	N/A
PHROG	UHGV-0019359_64	phrog_3287	98.6	4.4e-29	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0019359_64	1232449.BAHV02000016_gene1816	279.0	0	N/A	N/A
structural_annotation	UHGV-0019359_64	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019359_65	397290.C810_05240	64.7	0.0000000135	N/A	N/A
PHROG	UHGV-0019359_66	phrog_2824	82.1	3.3e-24	virion structural protein	head and packaging
UniRef90	UHGV-0019359_66	UniRef90_A0A1C6GKY2	328.0	0	Mtd_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0019359_66	696281.Desru_3489	205.0	0	exo-alpha-(2->6)-sialidase activity	N/A
Pfam	UHGV-0019359_66	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
COG	UHGV-0019359_66	COG4409	N/A	N/A	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	N/A
structural_annotation	UHGV-0019359_66	PF18454	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019359_67	768710.DesyoDRAFT_5195	55.1	0.000000154	N/A	N/A
Pfam	UHGV-0019359_67	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
PHROG	UHGV-0019359_68	phrog_37900	44.1	0.000000000000047	N/A	unknown function
UniRef90	UHGV-0019359_68	UniRef90_A0A2V2GNJ9	140.0	2.83e-34	N/A	N/A
eggNOG-mapper	UHGV-0019359_68	693746.OBV_22720	166.0	8.40779e-45	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-0019359_68	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0019359_68	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0019359_68	PF19789	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0019359_70	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0019359_70	NF040910	N/A	N/A	N/A	N/A