UHGV-0019376 (vOTU-006988)

Viral Genome: UHGV-0019376

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0019376
vOTU ID	vOTU-006988
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_L_5_1538__NODE_1128_length_40388_cov_27.491702
Associated BioSample	SAMEA4765828
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9819
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.54
Jumbo phage	No

Genome content
Genome length (bp)	40,311
GC content	55.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	71
CDS density	92%
Average CDS length (bps)	523.65
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0019376_2	K00558	160.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0019376_2	phrog_363	244.5	0	DNA methyltransferase	other
UniRef90	UHGV-0019376_2	UniRef90_G4KRB8	350.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0019376_2	693746.OBV_01900	350.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0019376_2	MTase_II_00058	125.0	4.4e-37	Type II methyltransferase	RM
Pfam	UHGV-0019376_2	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0019376_2	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0019376_2	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0019376_2	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0019376_3	K00390	100.3	2e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0019376_3	phrog_424	114.8	6.3e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0019376_3	UniRef90_UPI001D087498	425.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0019376_3	1408437.JNJN01000032_gene2312	343.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0019376_3	BrxP_00001	63.5	3.6e-19	BrxP	BREX
Pfam	UHGV-0019376_3	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0019376_3	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0019376_3	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
Pfam	UHGV-0019376_4	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0019376_4	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_5	phrog_3136	128.8	2e-38	N/A	unknown function
UniRef90	UHGV-0019376_5	UniRef90_A0A3D0HBD2	106.0	2.24e-26	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0019376_5	642492.Clole_1416	73.6	0.00000000000000773	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0019376_5	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0019376_5	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0019376_5	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_6	phrog_38832	96.3	2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0019376_6	665956.HMPREF1032_00143	100.0	7.66e-24	N/A	N/A
PHROG	UHGV-0019376_9	phrog_190	102.0	5.6e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019376_9	UniRef90_UPI0006C2AC63	142.0	1.52999e-40	N/A	N/A
eggNOG-mapper	UHGV-0019376_9	693746.OBV_25250	119.0	3.28e-32	N/A	N/A
Pfam	UHGV-0019376_9	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0019376_9	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019376_11	PF10013	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019376_13	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_14	phrog_3584	110.2	1.6e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0019376_14	537013.CLOSTMETH_02141	63.9	0.00000000121	N/A	N/A
structural_annotation	UHGV-0019376_14	PF21578,MF_00360	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019376_17	UniRef90_A0A413FXL7	55.5	0.00000318	PLD phosphodiesterase domain-containing protein	N/A
eggNOG-mapper	UHGV-0019376_17	1166018.FAES_3645	54.7	0.00000121	N/A	N/A
structural_annotation	UHGV-0019376_17	PF17941,MF_01918,NF010490,COG3886	N/A	N/A	N/A	N/A
KOfam	UHGV-0019376_18	K06909	122.8	3.3e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0019376_18	phrog_10250	154.7	0	N/A	unknown function
UniRef90	UHGV-0019376_18	UniRef90_A0A3D3Y0N9	575.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0019376_18	1226322.HMPREF1545_00043	563.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0019376_18	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0019376_18	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0019376_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019376_18	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_19	phrog_64	151.5	1.4013e-45	portal protein	head and packaging
UniRef90	UHGV-0019376_19	UniRef90_UPI001AA0B7FF	500.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0019376_19	673376.F2VHW1_9CAUD	220.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0019376_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0019376_19	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0019376_20	K08131	70.8	6.1e-21	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-0019376_20	phrog_8745	76.9	8.1e-23	tail fiber protein	tail
eggNOG-mapper	UHGV-0019376_20	1519439.JPJG01000060_gene1892	58.2	0.00000605	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0019376_20	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0019376_20	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0019376_22	phrog_30034	87.8	1.5e-25	N/A	unknown function
UniRef90	UHGV-0019376_22	UniRef90_A0A3D1XGA4	187.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019376_22	1122971.BAME01000151_gene6566	95.1	8.96e-22	N/A	N/A
PHROG	UHGV-0019376_23	phrog_595	122.0	6.2e-36	head maturation protease	head and packaging
UniRef90	UHGV-0019376_23	UniRef90_A0A810PSD3	456.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0019376_23	1504822.CCNO01000013_gene286	210.0	0	cell adhesion	N/A
Pfam	UHGV-0019376_23	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0019376_23	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0019376_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019376_23	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_24	phrog_5	91.6	9.2e-27	tail completion or Neck1 protein	connector
UniRef90	UHGV-0019376_24	UniRef90_UPI0018AA0B5A	177.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0019376_24	1280685.AUKC01000004_gene1630	103.0	9.36e-27	N/A	N/A
Pfam	UHGV-0019376_24	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0019376_24	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0019376_24	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_25	phrog_194	51.8	0.000000000000015	head scaffolding protein	head and packaging
UniRef90	UHGV-0019376_25	UniRef90_A0A6B9SU02	147.0	4.49999e-41	Fibronectin autolysin	N/A
eggNOG-mapper	UHGV-0019376_25	476272.RUMHYD_01775	61.2	0.00000000693	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-0019376_25	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_26	phrog_544	131.4	7.8e-39	major head protein	head and packaging
UniRef90	UHGV-0019376_26	UniRef90_A0A1C6B5R0	595.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0019376_26	1232453.BAIF02000011_gene3359	363.0	0	N/A	N/A
Pfam	UHGV-0019376_26	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0019376_26	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_28	phrog_17977	79.7	2.4e-23	N/A	unknown function
UniRef90	UHGV-0019376_28	UniRef90_UPI00141211AB	114.0	9.97e-31	head-tail adaptor protein	N/A
Pfam	UHGV-0019376_28	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0019376_28	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019376_29	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_30	phrog_885	70.3	2.2e-20	major tail protein	tail
UniRef90	UHGV-0019376_30	UniRef90_A0A843J9F0	204.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0019376_30	1504822.CCNO01000012_gene492	233.0	0	N/A	N/A
structural_annotation	UHGV-0019376_30	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_31	phrog_18646	64.7	1.4e-18	N/A	unknown function
UniRef90	UHGV-0019376_31	UniRef90_B6CXF0	74.7	0.0000000000000066	Peptidase-colicin	N/A
PHROG	UHGV-0019376_33	phrog_6900	273.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0019376_33	1123312.KB904569_gene357	323.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0019376_33	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0019376_33	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_35	phrog_13879	175.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0019376_35	1122919.KB905559_gene1344	158.0	7.37e-40	N/A	N/A
structural_annotation	UHGV-0019376_35	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_36	phrog_18725	102.3	3.8e-30	N/A	unknown function
eggNOG-mapper	UHGV-0019376_36	693746.OBV_18220	132.0	2.2e-37	N/A	N/A
Pfam	UHGV-0019376_37	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-0019376_37	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
Pfam	UHGV-0019376_38	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-0019376_38	PF07484	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_41	phrog_6918	95.1	4.3e-28	holin	lysis
UniRef90	UHGV-0019376_41	UniRef90_A0A316QCY7	100.0	2e-25	Holin	N/A
eggNOG-mapper	UHGV-0019376_41	1297617.JPJD01000020_gene301	99.0	1.4e-25	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0019376_41	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0019376_41	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019376_42	UniRef90_A0A137SQ04	232.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
eggNOG-mapper	UHGV-0019376_42	525254.HMPREF0072_1273	227.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0019376_42	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0019376_42	NF033743	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019376_43	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_46	phrog_25567	40.6	0.00000000003	N/A	unknown function
eggNOG-mapper	UHGV-0019376_46	1235798.C817_04600	62.0	0.0000000000646	N/A	N/A
structural_annotation	UHGV-0019376_46	PF13560,NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_47	phrog_3754	95.8	4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0019376_47	476272.RUMHYD_01764	163.0	0	N/A	N/A
PHROG	UHGV-0019376_48	phrog_21718	88.5	4.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0019376_48	476272.RUMHYD_01768	60.8	0.00000000142	N/A	N/A
PHROG	UHGV-0019376_49	phrog_22984	68.4	2.7e-20	N/A	unknown function
PHROG	UHGV-0019376_50	phrog_16490	154.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0019376_50	397290.C810_01328	108.0	3.21e-25	N/A	N/A
PHROG	UHGV-0019376_52	phrog_20016	184.0	0	N/A	unknown function
UniRef90	UHGV-0019376_52	UniRef90_A0A285PT46	189.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0019376_52	1226322.HMPREF1545_00077	167.0	0	N/A	N/A
structural_annotation	UHGV-0019376_52	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019376_53	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019376_54	1226322.HMPREF1545_00079	110.0	1.42e-29	N/A	N/A
Pfam	UHGV-0019376_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0019376_55	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0019376_59	K06400	252.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0019376_59	phrog_95	267.9	0	integrase	integration and excision
UniRef90	UHGV-0019376_59	UniRef90_UPI001959E5F7	415.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0019376_59	693746.OBV_17430	398.0	0	resolvase	N/A
Pfam	UHGV-0019376_59	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0019376_59	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0019376_59	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0019376_59	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0019376_59	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019376_60	1280682.AUKA01000018_gene2337	143.0	4.46e-38	N/A	N/A
Pfam	UHGV-0019376_60	PF12773	N/A	N/A	Double zinc ribbon	DZR
Pfam	UHGV-0019376_60	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
structural_annotation	UHGV-0019376_60	PF02805	N/A	N/A	N/A	N/A
KOfam	UHGV-0019376_61	K22300	59.0	1.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0019376_61	phrog_8	56.0	8.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019376_61	UniRef90_E2ZIF0	129.0	6.92e-36	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0019376_61	748224.HMPREF9436_01444	129.0	1.16e-36	N/A	N/A
PADLOC	UHGV-0019376_61	retron_type_VI_hth_cluster2_1	44.5	0.0000000000038	N/A	Retron
Pfam	UHGV-0019376_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019376_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0019376_61	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019376_63	PF15188,NF010673	N/A	N/A	N/A	N/A
PHROG	UHGV-0019376_66	phrog_478	133.0	1e-39	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0019376_66	UniRef90_A0A373Q857	166.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0019376_66	1111121.HMPREF1247_0834	97.4	3.95e-24	N/A	N/A
structural_annotation	UHGV-0019376_67	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019376_70	PF05082	N/A	N/A	N/A	N/A