UHGV-0019896 (vOTU-043160)

Viral Genome: UHGV-0019896

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0019896
vOTU ID	vOTU-043160
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_15_1726__NODE_1724_length_44405_cov_21.346824
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9822
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.04
Jumbo phage	No

Genome content
Genome length (bp)	44,345
GC content	54.97%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	95%
Average CDS length (bps)	610.91
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0019896_3	phrog_22978	1365.8	0	N/A	unknown function
UniRef90	UHGV-0019896_3	UniRef90_A0A396KH15	517.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019896_3	1410650.JHWL01000003_gene2814	305.0	0	N/A	N/A
eggNOG-mapper	UHGV-0019896_4	1226322.HMPREF1545_00786	120.0	7.42e-27	N/A	N/A
PHROG	UHGV-0019896_5	phrog_511	246.7	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0019896_5	1226322.HMPREF1545_00785	541.0	0	N/A	N/A
structural_annotation	UHGV-0019896_5	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_6	phrog_1899	69.5	3.9e-31	N/A	unknown function
UniRef90	UHGV-0019896_6	UniRef90_A0A3D1LBG0	341.0	0	Gp58 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019896_6	1226322.HMPREF1545_00783	99.8	6.66e-21	Chaperone of endosialidase	N/A
Pfam	UHGV-0019896_6	PF07902	N/A	N/A	gp58-like protein	Gp58
structural_annotation	UHGV-0019896_6	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_7	phrog_937	51.1	0.000000000000024	hemolysin	other
eggNOG-mapper	UHGV-0019896_7	1519439.JPJG01000023_gene533	76.6	5.45e-17	N/A	N/A
KOfam	UHGV-0019896_8	K18454	45.0	0.0000000000014	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-0019896_8	phrog_30034	73.6	3.7e-21	N/A	unknown function
UniRef90	UHGV-0019896_8	UniRef90_A0A1C5VT90	144.0	6.45999e-42	Chitinase A1	N/A
eggNOG-mapper	UHGV-0019896_8	1235796.C815_00903	127.0	3.12e-35	N/A	N/A
Pfam	UHGV-0019896_8	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0019896_8	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_10	phrog_29409	46.1	0.00000000000078	N/A	unknown function
UniRef90	UHGV-0019896_10	UniRef90_UPI001C128253	70.5	0.000000000000448	isoaspartyl peptidase	N/A
PHROG	UHGV-0019896_11	phrog_37900	316.7	0	N/A	unknown function
UniRef90	UHGV-0019896_11	UniRef90_UPI001C3EA4DF	331.0	0	N/A	N/A
eggNOG-mapper	UHGV-0019896_11	552398.HMPREF0866_03098	241.0	0	N/A	N/A
Pfam	UHGV-0019896_11	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0019896_11	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0019896_11	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_12	phrog_6320	43.6	0.0000000000035	tail fiber protein	tail
Pfam	UHGV-0019896_12	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0019896_13	K16628	80.7	4.4e-24	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0019896_13	phrog_819	107.1	4.8e-38	tail protein	tail
eggNOG-mapper	UHGV-0019896_13	1232443.BAIA02000078_gene14	88.6	0.00000000000000185	nuclear chromosome segregation	N/A
Pfam	UHGV-0019896_13	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0019896_13	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0019896_14	phrog_15239	86.9	1.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0019896_14	1449126.JQKL01000003_gene1694	57.4	0.00000000273	N/A	N/A
PHROG	UHGV-0019896_15	phrog_1357	268.4	0	major head protein	head and packaging
UniRef90	UHGV-0019896_15	UniRef90_A0A8D9UH64	534.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0019896_15	1449126.JQKL01000003_gene1695	402.0	0	N/A	N/A
Pfam	UHGV-0019896_15	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0019896_15	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0019896_15	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_16	phrog_13908	290.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0019896_16	1203606.HMPREF1526_02747	59.7	0.000000127	N/A	N/A
PHROG	UHGV-0019896_17	phrog_4478	41.0	0.000000000026	peptidase	other
UniRef90	UHGV-0019896_17	UniRef90_UPI001D021C93	58.9	0.00000000284	ribosomal-processing cysteine protease Prp	N/A
COG	UHGV-0019896_17	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019896_17	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_18	phrog_156	326.6	0	portal protein	head and packaging
UniRef90	UHGV-0019896_18	UniRef90_A0A8D9UH10	790.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0019896_18	748224.HMPREF9436_01396	531.0	0	N/A	N/A
structural_annotation	UHGV-0019896_18	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0019896_19	K06909	110.8	1.4e-32	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0019896_19	phrog_979	204.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0019896_19	UniRef90_A0A3D1LE76	1009.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0019896_19	657322.FPR_02290	664.0	0	Terminase-like family	N/A
Pfam	UHGV-0019896_19	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0019896_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019896_19	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_20	phrog_606	82.8	4.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0019896_20	UniRef90_UPI00195648BB	147.0	5.45105e-43	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0019896_20	397290.C810_05185	129.0	3.76e-36	DNA-packaging protein gp3	N/A
Pfam	UHGV-0019896_20	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0019896_20	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_24	phrog_801	80.1	3.1e-23	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0019896_24	UniRef90_A0A2K9P078	108.0	7.18e-29	N/A	N/A
Pfam	UHGV-0019896_24	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0019896_24	PF18909	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019896_28	UniRef90_A0A374AB28	181.0	0	Thymidylate synthase ThyX	N/A
eggNOG-mapper	UHGV-0019896_28	935948.KE386495_gene2250	90.5	1.7e-20	N/A	N/A
Pfam	UHGV-0019896_28	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0019896_28	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019896_30	UniRef90_A0A8D9PDT5	54.3	0.000000278	Hydrogenase/urease nickel incorporation protein	N/A
UniRef90	UHGV-0019896_31	UniRef90_R6QWY1	109.0	2.58e-29	28	N/A
dbAPIS	UHGV-0019896_31	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0019896_33	phrog_38832	78.1	1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0019896_33	665956.HMPREF1032_00143	73.9	0.0000000000000365	N/A	N/A
structural_annotation	UHGV-0019896_33	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_34	phrog_4019	75.4	5.5e-22	N/A	unknown function
PHROG	UHGV-0019896_35	phrog_3136	136.1	1.10001e-40	N/A	unknown function
UniRef90	UHGV-0019896_35	UniRef90_UPI001CBCD733	104.0	4.91e-25	ASCH domain-containing protein	N/A
COG	UHGV-0019896_35	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0019896_35	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
Pfam	UHGV-0019896_36	PF14359	N/A	N/A	N/A	DUF4406
PHROG	UHGV-0019896_37	phrog_924	42.8	0.0000000000013	N/A	unknown function
UniRef90	UHGV-0019896_37	UniRef90_A0A417H740	155.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0019896_37	1316932.MHH_c17560	51.6	0.00000717	N/A	N/A
Pfam	UHGV-0019896_37	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0019896_38	K00390	94.6	9.5e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0019896_38	phrog_424	104.2	1.3e-30	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0019896_38	UniRef90_A0A3D3Y454	588.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-0019896_38	1408437.JNJN01000032_gene2312	308.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0019896_38	BrxP_00001	64.9	6.2e-19	BrxP	BREX
Pfam	UHGV-0019896_38	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0019896_38	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0019896_38	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0019896_40	K01160	43.4	0.0000000000079	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
UniRef90	UHGV-0019896_40	UniRef90_A0A1V5ZUM0	109.0	4.02e-28	Endodeoxyribonuclease RusA	N/A
structural_annotation	UHGV-0019896_40	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0019896_42	K02315	110.1	2.5e-32	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0019896_42	phrog_50	101.2	1.2e-29	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019896_42	UniRef90_A0A4Z0Y679	232.0	0	DNA replication protein DnaC	N/A
eggNOG-mapper	UHGV-0019896_42	445972.ANACOL_01829	200.0	0	N/A	N/A
Pfam	UHGV-0019896_42	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0019896_42	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0019896_42	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_43	phrog_15768	124.7	9.4e-38	N/A	unknown function
UniRef90	UHGV-0019896_43	UniRef90_UPI001959E913	188.0	0	N/A	N/A
eggNOG-mapper	UHGV-0019896_43	929704.Myrod_0677	103.0	4.18e-24	N/A	N/A
AcrCatalog	UHGV-0019896_43	cluster_38323	100.0	4.27e-28	NA	N/A
Pfam	UHGV-0019896_43	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0019896_43	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0019896_44	K03111	133.1	3.1e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0019896_44	phrog_44	136.9	1.3e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019896_44	UniRef90_A0A2V2CEG7	192.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0019896_44	693746.OBV_12860	177.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0019896_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0019896_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0019896_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0019896_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0019896_44	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019896_46	UniRef90_A0A8D9PDS2	153.0	4.2039e-44	NinB protein	N/A
eggNOG-mapper	UHGV-0019896_46	445972.ANACOL_01825	128.0	4.24e-35	N/A	N/A
structural_annotation	UHGV-0019896_46	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_47	phrog_155	140.2	1.29998e-41	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019896_47	UniRef90_UPI00130EB09C	200.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0019896_47	748224.HMPREF9436_03360	171.0	0	ERF superfamily	N/A
Pfam	UHGV-0019896_47	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0019896_47	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_50	phrog_4973	61.8	9.3e-18	N/A	unknown function
UniRef90	UHGV-0019896_50	UniRef90_A0A3D3Y5F2	83.2	2.72e-19	DNA-binding protein	N/A
Pfam	UHGV-0019896_50	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0019896_50	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019896_53	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019896_54	UniRef90_A0A5B6P9C0	72.4	0.00000000000000536	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0019896_54	428125.CLOLEP_02737	70.5	0.00000000000000684	N/A	N/A
PHROG	UHGV-0019896_55	phrog_8	55.9	0.0000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019896_55	UniRef90_A0A1Y3RHT3	97.1	1.28e-23	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0019896_55	742740.HMPREF9474_03481	62.8	0.0000000000841	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0019896_55	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0019896_55	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0019896_55	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
COG	UHGV-0019896_56	COG0484	N/A	N/A	DnaJ-class molecular chaperone with C-terminal Zn finger domain	N/A
UniRef90	UHGV-0019896_59	UniRef90_A0A3D3Y4M8	194.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0019896_59	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0019896_59	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0019896_60	K14059	162.6	0	int; integrase	N/A
PHROG	UHGV-0019896_60	phrog_1	168.0	0	integrase	integration and excision
UniRef90	UHGV-0019896_60	UniRef90_A0A2Z4QB94	293.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0019896_60	1226322.HMPREF1545_00144	135.0	1.92e-34	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0019896_60	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019896_60	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019896_60	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019896_61	UniRef90_A0A7M1RRU0	78.2	0.00000000000000756	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0019896_61	1378168.N510_03079	67.4	0.0000000000309	N/A	N/A
KOfam	UHGV-0019896_64	K19167	109.7	3.9e-32	abiQ; protein AbiQ	N/A
PHROG	UHGV-0019896_64	phrog_9764	119.5	2.3e-35	N/A	unknown function
UniRef90	UHGV-0019896_64	UniRef90_A0A845R8D8	216.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-0019896_64	1519439.JPJG01000060_gene1906	172.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-0019896_64	AbiQ	137.6	1.3e-40	AbiQ	Abi
Pfam	UHGV-0019896_64	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-0019896_64	PF13958	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019896_65	PF16509,MF_00245,NF008895,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019896_66	UniRef90_A0A357JC47	53.5	0.0000000405	RHH_5 domain-containing protein	N/A
Pfam	UHGV-0019896_66	PF08681	N/A	N/A	N/A	DUF1778
COG	UHGV-0019896_66	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
structural_annotation	UHGV-0019896_67	PF19923	N/A	N/A	N/A	N/A
KOfam	UHGV-0019896_68	K01447	96.6	3.6e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0019896_68	phrog_670	117.7	4.5e-35	endolysin	lysis
UniRef90	UHGV-0019896_68	UniRef90_A0A3D4VSU2	150.0	5.25067e-42	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0019896_68	1203606.HMPREF1526_00589	84.7	3.36e-17	Ami_2	N/A
Pfam	UHGV-0019896_68	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0019896_68	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0019896_68	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0019896_69	phrog_6918	59.7	4.7e-17	holin	lysis
UniRef90	UHGV-0019896_69	UniRef90_G9YP36	78.6	4.05e-17	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-0019896_69	552398.HMPREF0866_03092	57.8	0.00000000112	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0019896_69	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1