UHGV-0019928 (vOTU-023363)

Viral Genome: UHGV-0019928

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0019928
vOTU ID	vOTU-023363
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_K_24_1168__NODE_2388_length_40079_cov_5.574771
Associated BioSample	SAMEA4765628
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.13 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9768
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.33
Jumbo phage	No

Genome content
Genome length (bp)	40,079
GC content	40.70%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	87%
Average CDS length (bps)	506.65
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 74.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0019928_2	phrog_1281	98.6	5e-29	N/A	unknown function
UniRef90	UHGV-0019928_2	UniRef90_A0A268TNE3	97.1	5.18e-23	N/A	N/A
eggNOG-mapper	UHGV-0019928_2	1321815.HMPREF9193_02066	84.3	1.01e-18	N/A	N/A
Pfam	UHGV-0019928_2	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0019928_2	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019928_2	PF13274,COG3600	N/A	N/A	N/A	N/A
KOfam	UHGV-0019928_3	K22300	47.4	0.00000000000036	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0019928_3	phrog_3	42.2	0.000000000028	transcriptional repressor	transcription regulation
UniRef90	UHGV-0019928_3	UniRef90_A0A4R3YXE2	54.3	0.00000249	DNA-binding XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0019928_3	585506.HMPREF0877_1435	53.5	0.000000891	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0019928_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019928_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-0019928_5	UniRef90_A0A7X5IRY2	74.3	0.00000000000000624	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0019928_5	1378168.N510_01712	62.4	0.000000000451	N/A	N/A
structural_annotation	UHGV-0019928_5	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019928_6	UniRef90_UPI0018995761	78.2	9.58e-18	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0019928_6	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0019928_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
UniRef90	UHGV-0019928_8	UniRef90_UPI000B9C2802	55.1	0.00000338	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0019928_8	555088.DealDRAFT_1919	56.2	0.000000804	PFAM Helix-turn-helix	N/A
Pfam	UHGV-0019928_8	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
Pfam	UHGV-0019928_8	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0019928_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0019928_8	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019928_9	UniRef90_A0A7X5IT16	55.1	0.0000000123	XRE family transcriptional regulator (Fragment)	N/A
Pfam	UHGV-0019928_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019928_9	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0019928_9	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0019928_10	K07741	132.5	6.9e-39	antB; anti-repressor protein	N/A
PHROG	UHGV-0019928_10	phrog_130	245.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0019928_10	UniRef90_A0A1Q6R5B0	325.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0019928_10	1122146.AUHP01000010_gene1023	287.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0019928_10	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0019928_10	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0019928_10	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0019928_10	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_16	phrog_674	132.4	3.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-0019928_16	665956.HMPREF1032_03103	80.9	0.0000000000000107	N/A	N/A
Pfam	UHGV-0019928_16	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0019928_16	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0019928_17	K07455	179.7	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0019928_17	phrog_148	204.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019928_17	UniRef90_A0A355KWE4	325.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0019928_17	428127.EUBDOL_01509	314.0	0	RecT family	N/A
Pfam	UHGV-0019928_17	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0019928_17	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0019928_17	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0019928_17	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0019928_18	K06167	49.8	0.000000000000041	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0019928_18	phrog_392	126.9	1.9e-37	metal-dependent hydrolase	other
UniRef90	UHGV-0019928_18	UniRef90_UPI000990493D	261.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0019928_18	665956.HMPREF1032_03101	214.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0019928_18	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0019928_18	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0019928_18	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_24	phrog_8489	205.7	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019928_24	UniRef90_A0A414B588	176.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-0019928_24	411459.RUMOBE_01034	204.0	0	DnaD domain protein	N/A
COG	UHGV-0019928_24	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0019928_24	PF09681,TIGR01714	N/A	N/A	N/A	N/A
Pfam	UHGV-0019928_25	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
KOfam	UHGV-0019928_26	K01160	51.8	0.000000000000023	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0019928_26	phrog_1682	61.1	1.9e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019928_26	UniRef90_A0A1C5N534	93.6	4.19e-22	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0019928_26	1235790.C805_00029	95.1	1.7e-23	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0019928_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0019928_26	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019928_28	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019928_30	97139.C824_00147	66.2	0.000000000008	N/A	N/A
KOfam	UHGV-0019928_31	K07727	56.2	9.3e-16	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0019928_31	UniRef90_A0A358PSC0	122.0	3.77e-35	Cro/Cl family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0019928_31	411470.RUMGNA_00075	94.4	1.22e-24	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0019928_31	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0019928_31	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019928_32	PF19807,NF010256,COG4453	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_34	phrog_2059	58.9	1.2e-16	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0019928_34	UniRef90_A0A1V5DZ33	93.2	6.38e-21	Antirestriction protein (ArdA)	N/A
eggNOG-mapper	UHGV-0019928_34	709032.Sulku_R0042	64.3	0.00000000016	PFAM Antirestriction ArdA family protein	N/A
Pfam	UHGV-0019928_34	PF07275	N/A	N/A	Antirestriction protein (ArdA)	ArdA
dbAPIS	UHGV-0019928_34	APIS003	N/A	N/A	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	N/A
COG	UHGV-0019928_34	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0019928_34	PF07275,COG4734	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019928_35	PF08207,MF_00085,TIGR00037,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_36	phrog_13890	58.5	7.3e-17	N/A	unknown function
UniRef90	UHGV-0019928_36	UniRef90_U2QSH7	59.3	0.000000000309	Ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-0019928_36	1507.HMPREF0262_00298	65.9	0.000000000000167	N/A	N/A
structural_annotation	UHGV-0019928_36	PF03869,NF040976,COG4453	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_38	phrog_1281	116.8	1.1e-34	N/A	unknown function
UniRef90	UHGV-0019928_38	UniRef90_A0A1V0QCF7	152.0	1.96182e-44	N/A	N/A
eggNOG-mapper	UHGV-0019928_38	762211.BSTEL_0669	127.0	1.68e-35	N/A	N/A
Pfam	UHGV-0019928_38	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0019928_38	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019928_38	PF13274,COG3600	N/A	N/A	N/A	N/A
KOfam	UHGV-0019928_39	K06400	204.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0019928_39	phrog_95	199.4	0	integrase	integration and excision
UniRef90	UHGV-0019928_39	UniRef90_A0A3D4G6V8	326.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0019928_39	697329.Rumal_3466	229.0	0	resolvase	N/A
Pfam	UHGV-0019928_39	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0019928_39	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0019928_39	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0019928_39	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_41	phrog_125	42.8	0.0000000000079	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019928_41	UniRef90_UPI001D07734C	105.0	3.08e-25	recombinase family protein	N/A
eggNOG-mapper	UHGV-0019928_41	1294142.CINTURNW_1680	85.1	5.79e-18	Resolvase, N terminal domain	N/A
Pfam	UHGV-0019928_41	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0019928_41	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
PHROG	UHGV-0019928_42	phrog_38	200.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0019928_42	UniRef90_UPI001D063AE7	291.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0019928_42	1123263.AUKY01000015_gene1608	267.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0019928_42	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0019928_42	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019928_42	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_43	phrog_64	233.9	0	portal protein	head and packaging
UniRef90	UHGV-0019928_43	UniRef90_R6P563	378.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0019928_43	1121866.AUGK01000003_gene1429	338.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0019928_43	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0019928_43	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019928_44	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_45	phrog_544	280.9	0	major head protein	head and packaging
UniRef90	UHGV-0019928_45	UniRef90_A0A316P9D7	301.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0019928_45	397290.C810_01400	257.0	0	N/A	N/A
NCBIFam	UHGV-0019928_45	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0019928_45	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019928_46	UniRef90_UPI001D07B1DB	87.8	2e-20	phage head-tail connector protein	N/A
Pfam	UHGV-0019928_46	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0019928_46	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019928_47	1232453.BAIF02000058_gene1630	73.6	0.0000000000000047	N/A	N/A
structural_annotation	UHGV-0019928_47	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019928_49	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_50	phrog_158	40.2	0.000000000053	major tail protein	tail
UniRef90	UHGV-0019928_50	UniRef90_UPI001D087591	94.0	3.99e-22	phage tail protein	N/A
eggNOG-mapper	UHGV-0019928_50	1232453.BAIF02000058_gene1634	74.3	0.0000000000000032	N/A	N/A
structural_annotation	UHGV-0019928_50	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019928_51	1123263.AUKY01000015_gene1618	67.8	0.000000000000327	N/A	N/A
Pfam	UHGV-0019928_51	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0019928_51	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019928_52	1121333.JMLH01000047_gene1011	75.9	0.00000000000000131	N/A	N/A
PHROG	UHGV-0019928_53	phrog_1535	82.8	1.2e-32	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0019928_53	1298920.KI911353_gene2649	94.4	1.07e-16	tape measure	N/A
COG	UHGV-0019928_53	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0019928_54	phrog_1194	89.1	3.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0019928_54	1280689.AUJC01000003_gene977	54.3	0.0000000911	N/A	N/A
Pfam	UHGV-0019928_54	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0019928_54	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_55	phrog_13879	213.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0019928_55	665956.HMPREF1032_03055	96.3	4.05e-18	N/A	N/A
structural_annotation	UHGV-0019928_55	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_56	phrog_18725	66.7	8.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0019928_56	693746.OBV_18220	109.0	1.74e-28	N/A	N/A
structural_annotation	UHGV-0019928_58	PF21253,NF038128,COG5156	N/A	N/A	N/A	N/A
KOfam	UHGV-0019928_60	K07273	88.0	1.2e-25	acm; lysozyme	N/A
PHROG	UHGV-0019928_60	phrog_291	74.2	2.2e-21	endolysin	lysis
UniRef90	UHGV-0019928_60	UniRef90_A0A6B9SS82	80.9	0.000000000000129	Lysozyme	N/A
COG	UHGV-0019928_60	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
PHROG	UHGV-0019928_61	phrog_1863	49.8	0.000000000000028	N/A	unknown function
eggNOG-mapper	UHGV-0019928_61	66692.ABC2817	59.3	0.000000000286	N/A	N/A
PHROG	UHGV-0019928_64	phrog_22984	43.4	0.0000000000055	N/A	unknown function
structural_annotation	UHGV-0019928_66	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0019928_68	K14059	215.8	0	int; integrase	N/A
PHROG	UHGV-0019928_68	phrog_1	192.9	0	integrase	integration and excision
UniRef90	UHGV-0019928_68	UniRef90_A0A847CB94	337.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0019928_68	279010.BL03620	155.0	5.51999e-41	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0019928_68	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0019928_68	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019928_68	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019928_68	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0019928_69	phrog_5763	48.0	0.00000000000013	N/A	unknown function