UHGV-0019952 (vOTU-074382)

Viral Genome: UHGV-0019952

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0019952
vOTU ID	vOTU-074382
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_6_1152__NODE_1216_length_63915_cov_135.645791
Associated BioSample	SAMEA4765612
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.56 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.975
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.95
Jumbo phage	No

Genome content
Genome length (bp)	63,915
GC content	48.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	73
CDS density	93%
Average CDS length (bps)	818.43
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.56)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0019952_17	UniRef90_D4MWL6	75.1	0.0000000000000182	N/A	N/A
eggNOG-mapper	UHGV-0019952_17	1410676.JNKL01000004_gene671	81.3	1.05e-17	Protein conserved in bacteria	N/A
Pfam	UHGV-0019952_17	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0019952_17	COG4728	N/A	N/A	N/A	N/A
KOfam	UHGV-0019952_22	K03698	241.0	0	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
UniRef90	UHGV-0019952_22	UniRef90_A0A7X7BYC9	186.0	0	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-0019952_22	660470.Theba_0421	145.0	9.19e-38	nucleic acid binding OB-fold tRNA helicase-type	N/A
Pfam	UHGV-0019952_22	PF01966	N/A	N/A	HD domain	HD
NCBIFam	UHGV-0019952_22	TIGR00277.1	N/A	N/A	HDIG domain-containing protein	N/A
COG	UHGV-0019952_22	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0019952_22	PF13742,PF01966,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-0019952_23	phrog_6038	42.6	0.0000000000093	N/A	unknown function
KOfam	UHGV-0019952_24	K01449	57.6	2.6e-16	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0019952_24	phrog_14642	40.9	0.000000000017	endolysin	lysis
Pfam	UHGV-0019952_24	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0019952_24	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
KOfam	UHGV-0019952_28	K02335	338.6	0	polA; DNA polymerase I [EC:2.7.7.7]	N/A
PHROG	UHGV-0019952_28	phrog_17	331.6	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019952_28	UniRef90_A0A7X7H672	438.0	0	DNA polymerase I	N/A
eggNOG-mapper	UHGV-0019952_28	1270193.JARP01000002_gene1097	212.0	0	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	N/A
PADLOC	UHGV-0019952_28	drt-cluster58	61.5	1.6e-17	DRT	DRT
Pfam	UHGV-0019952_28	PF01612	N/A	N/A	3'-5' exonuclease	DNA_pol_A_exo1
Pfam	UHGV-0019952_28	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0019952_28	COG0258	N/A	N/A	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	N/A
structural_annotation	UHGV-0019952_28	PF00476,PF01612,MF_04101,NF011541,COG0749	N/A	N/A	N/A	N/A
KOfam	UHGV-0019952_30	K01493	85.3	8.3e-25	comEB; dCMP deaminase [EC:3.5.4.12]	N/A
PHROG	UHGV-0019952_30	phrog_174	104.7	5.7e-31	dCMP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019952_30	UniRef90_A0A7X7BY83	142.0	5.02001e-41	CMP/dCMP-type deaminase domain-containing protein	N/A
eggNOG-mapper	UHGV-0019952_30	643867.Ftrac_0923	77.4	5.92e-16	PFAM Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
PADLOC	UHGV-0019952_30	dCTPase	45.7	6.6e-17	N/A	N/A
Pfam	UHGV-0019952_30	PF00383	N/A	N/A	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
COG	UHGV-0019952_30	COG2131	N/A	N/A	Deoxycytidylate deaminase	N/A
PHROG	UHGV-0019952_32	phrog_761	72.7	4.3e-21	thymidylate kinase	other
UniRef90	UHGV-0019952_32	UniRef90_A0A7X7BY76	117.0	1.97e-30	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0019952_32	1003195.SCAT_2836	66.6	0.0000000000147	N/A	N/A
Pfam	UHGV-0019952_32	PF02223	N/A	N/A	Thymidylate kinase	Thymidylate_kin
Pfam	UHGV-0019952_32	PF01712	N/A	N/A	Deoxynucleoside kinase	dNK
structural_annotation	UHGV-0019952_32	PF03976,MF_00165,TIGR00041,COG1428	N/A	N/A	N/A	N/A
KOfam	UHGV-0019952_33	K03465	67.6	1.9e-19	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
UniRef90	UHGV-0019952_33	UniRef90_A0A413BDY8	263.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0019952_33	511680.BUTYVIB_00662	263.0	0	thymidylate synthase (FAD) activity	N/A
Pfam	UHGV-0019952_33	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
COG	UHGV-0019952_33	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0019952_33	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0019952_35	phrog_173	42.1	1.5e-18	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019952_35	UniRef90_A0A358AR33	57.4	0.0000000497	dUTPase	N/A
eggNOG-mapper	UHGV-0019952_35	278957.ABEA03000094_gene4751	60.8	0.00000000043	dUTPase	N/A
Pfam	UHGV-0019952_35	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0019952_35	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0019952_35	PF12643,MF_01020,NF001610,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0019952_36	phrog_434	202.8	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019952_36	UniRef90_UPI000C8293E6	133.0	1.36e-32	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0019952_36	1123034.JMKP01000004_gene1721	119.0	5.18e-28	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0019952_36	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0019952_36	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0019952_36	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0019952_36	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0019952_38	K02316	114.1	1e-33	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0019952_38	phrog_18685	373.1	0	N/A	unknown function
UniRef90	UHGV-0019952_38	UniRef90_A0A661MUG1	543.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0019952_38	360911.EAT1b_0006	350.0	0	DNA primase activity	N/A
Pfam	UHGV-0019952_38	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0019952_38	PF13155	N/A	N/A	Toprim-like	Toprim_2
Pfam	UHGV-0019952_38	PF00493	N/A	N/A	MCM P-loop domain	MCM
COG	UHGV-0019952_38	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
structural_annotation	UHGV-0019952_38	PF00493,PF01807,PF13155,PF14947,MF_00974,MF_01314,NF040949,TIGR01391,COG1241	N/A	N/A	N/A	N/A
PHROG	UHGV-0019952_39	phrog_2402	53.8	0.000000000000002	N/A	unknown function
structural_annotation	UHGV-0019952_39	PF18897	N/A	N/A	N/A	N/A
KOfam	UHGV-0019952_40	K03469	93.9	2.2e-27	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0019952_40	phrog_531	85.6	4.3e-25	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019952_40	UniRef90_A0A7X7H6F4	119.0	1.44e-29	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019952_40	35725.K2RU56	70.1	0.0000000000335	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-0019952_40	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0019952_40	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0019952_40	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-0019952_42	K18951	167.4	0	gp30; DNA ligase [EC:6.5.1.1]	N/A
PHROG	UHGV-0019952_42	phrog_114	160.0	0	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019952_42	UniRef90_UPI000F637511	211.0	0	ATP-dependent DNA ligase	N/A
eggNOG-mapper	UHGV-0019952_42	1308863.U5JA36_9CAUD	160.0	1.38995e-41	DNA ligase (ATP) activity	N/A
Pfam	UHGV-0019952_42	PF01068	N/A	N/A	ATP dependent DNA ligase domain	DNA_ligase_A_M
structural_annotation	UHGV-0019952_42	PF01068,PF04675,MF_00407,NF002868,COG1793	N/A	N/A	N/A	N/A
KOfam	UHGV-0019952_43	K03091	48.3	0.00000000000018	sigH; RNA polymerase sporulation-specific sigma factor	N/A
Pfam	UHGV-0019952_43	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
structural_annotation	UHGV-0019952_43	PF04542,PF08281,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0019952_44	phrog_93	45.6	0.00000000000087	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019952_44	UniRef90_A0A6M3L522	57.4	0.0000000311	Putative VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0019952_44	350688.Clos_1296	48.9	0.00000644	pfam vrr-nuc	N/A
COG	UHGV-0019952_44	COG1591	N/A	N/A	Holliday junction resolvase Hjc, archaeal type	N/A
KOfam	UHGV-0019952_45	K20098	40.8	0.0000000000017	ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]	N/A
PHROG	UHGV-0019952_45	phrog_62	203.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019952_45	UniRef90_A0A7X7BY88	336.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0019952_45	1280676.AUJO01000007_gene2148	151.0	1.38e-35	SNF2 family N-terminal domain	N/A
Pfam	UHGV-0019952_45	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0019952_45	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0019952_45	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0019952_45	PF04851,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-0019952_47	K01447	49.2	0.000000000000099	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0019952_47	phrog_20388	283.8	0	endolysin	lysis
UniRef90	UHGV-0019952_47	UniRef90_A0A1C6D6B1	352.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0019952_47	665956.HMPREF1032_00684	289.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0019952_47	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0019952_47	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0019952_47	PF01510,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-0019952_50	phrog_37604	147.3	4.2039e-44	N/A	unknown function
eggNOG-mapper	UHGV-0019952_50	1232443.BAIA02000078_gene10	114.0	7.04e-30	N/A	N/A
UniRef90	UHGV-0019952_53	UniRef90_I4AEK8	95.9	1.04e-18	Na+/H+ antiporter NhaD-like permease	N/A
Pfam	UHGV-0019952_53	PF03600	N/A	N/A	Citrate transporter	CitMHS
KOfam	UHGV-0019952_54	K06871	64.1	2e-18	N/A	N/A
COG	UHGV-0019952_54	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
PHROG	UHGV-0019952_58	phrog_13879	275.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0019952_58	1122919.KB905559_gene1344	126.0	1.72e-27	N/A	N/A
PHROG	UHGV-0019952_59	phrog_1194	58.6	9.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0019952_59	1280692.AUJL01000027_gene2149	53.1	0.000000268	N/A	N/A
structural_annotation	UHGV-0019952_59	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019952_60	697281.Mahau_0585	126.0	1.48e-25	tape measure	N/A
Pfam	UHGV-0019952_60	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0019952_60	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0019952_60	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0019952_62	phrog_88	163.5	0	major tail protein	tail
UniRef90	UHGV-0019952_62	UniRef90_A0A7X7BYA3	199.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0019952_62	1329516.JPST01000016_gene403	144.0	1.54e-39	Phage major tail protein phi13	N/A
Pfam	UHGV-0019952_62	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0019952_62	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0019952_62	COG5184	N/A	N/A	Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins	N/A
structural_annotation	UHGV-0019952_62	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
Pfam	UHGV-0019952_63	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0019952_65	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0019952_66	phrog_1732	58.7	1.5e-16	N/A	unknown function
PHROG	UHGV-0019952_68	phrog_1005	288.5	0	major head protein	head and packaging
UniRef90	UHGV-0019952_68	UniRef90_A0A316D4V5	283.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0019952_68	1499967.BAYZ01000197_gene3056	125.0	1.23e-30	N/A	N/A
Pfam	UHGV-0019952_68	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0019952_68	PF03864,MF_04133,NF041162,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-0019952_69	phrog_673	51.0	0.000000000000025	head scaffolding protein	head and packaging
Pfam	UHGV-0019952_69	PF09956	N/A	N/A	N/A	DUF2190
PHROG	UHGV-0019952_71	phrog_1530	92.5	6.2e-27	DNA methyltransferase	other
UniRef90	UHGV-0019952_71	UniRef90_A0A7X7BY63	154.0	9.80909e-45	Peptidase_S78_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019952_71	478749.BRYFOR_07609	124.0	1.69e-33	Putative phage serine protease XkdF	N/A
Pfam	UHGV-0019952_71	PF14550	N/A	N/A	Putative phage serine protease XkdF	Peptidase_S78_2
PHROG	UHGV-0019952_72	phrog_113	181.0	0	portal protein	head and packaging
UniRef90	UHGV-0019952_72	UniRef90_A0A448W1F8	304.0	0	Mu-like prophage protein gp29	N/A
eggNOG-mapper	UHGV-0019952_72	1235793.C809_02225	315.0	0	Mu-like prophage protein gp29	N/A
Pfam	UHGV-0019952_72	PF06074	N/A	N/A	N/A	DUF935
COG	UHGV-0019952_72	COG4383	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019952_72	PF06074,MF_04135,TIGR01537,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-0019952_73	phrog_979	294.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0019952_73	UniRef90_A0A7X7BY57	485.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0019952_73	1444711.CCJF01000003_gene10	159.0	3.09995e-41	N/A	N/A
Pfam	UHGV-0019952_73	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0019952_73	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0019952_73	COG5362	N/A	N/A	Phage terminase large subunit	N/A