UHGV-0020101 (vOTU-023803)

Viral Genome: UHGV-0020101

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0020101
vOTU ID	vOTU-023803
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_F_14_1634__NODE_401_length_39946_cov_23.844415
Associated BioSample	SAMEA4765914
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.84 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9685
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.11
Jumbo phage	No

Genome content
Genome length (bp)	39,946
GC content	39.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	94%
Average CDS length (bps)	614.80
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0020101_1	K06400	227.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0020101_1	phrog_95	238.3	0	integrase	integration and excision
UniRef90	UHGV-0020101_1	UniRef90_C7GC54	851.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0020101_1	1256908.HMPREF0373_00206	552.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0020101_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0020101_1	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0020101_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0020101_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_2	phrog_2158	192.3	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0020101_2	UniRef90_A0A1E3AYC4	376.0	0	Abi-like protein	N/A
eggNOG-mapper	UHGV-0020101_2	411490.ANACAC_00817	232.0	0	Abi-like protein	N/A
PADLOC	UHGV-0020101_2	AbiD	110.4	3.2e-32	AbiD	Abi
Pfam	UHGV-0020101_2	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0020101_2	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0020101_2	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-0020101_3	K07448	99.9	2.6e-29	mrr; restriction system protein	N/A
PHROG	UHGV-0020101_3	phrog_19856	51.4	0.000000000000011	N/A	unknown function
UniRef90	UHGV-0020101_3	UniRef90_A0A1C5ZNG9	271.0	0	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-0020101_3	1235790.C805_00010	145.0	1.33e-38	Restriction endonuclease	N/A
PADLOC	UHGV-0020101_3	ZorD1_00005	66.2	4.8e-19	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0020101_3	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0020101_3	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
KOfam	UHGV-0020101_4	K01356	80.4	3.3e-23	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0020101_4	phrog_4	120.7	1.2e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0020101_4	UniRef90_A0A7U9RXA8	244.0	0	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-0020101_4	1232446.BAIE02000002_gene795	192.0	0	N/A	N/A
Pfam	UHGV-0020101_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0020101_4	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0020101_4	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0020101_4	PF00717,PF01381,MF_00015,NF007621,NF041951,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020101_5	UniRef90_A0A1M7JMH1	80.1	3.12e-18	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0020101_5	1232446.BAIE02000002_gene796	60.8	0.0000000000222	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0020101_5	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0020101_5	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020101_8	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_10	phrog_750	79.5	2.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-0020101_10	742723.HMPREF9477_00931	83.2	1.96e-19	N/A	N/A
structural_annotation	UHGV-0020101_10	PF13835,NF040858	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020101_15	PF07408,MF_01560,TIGR00029,COG0268	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_18	phrog_3584	167.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0020101_18	411459.RUMOBE_00953	358.0	0	N/A	N/A
structural_annotation	UHGV-0020101_18	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-0020101_19	K03469	58.2	1.9e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0020101_19	phrog_531	54.1	0.0000000000000028	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020101_19	UniRef90_A0A1Q6KIM6	268.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020101_19	767817.Desgi_2105	60.8	0.00000000122	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0020101_19	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0020101_19	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0020101_19	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020101_20	1280698.AUJS01000007_gene1016	148.0	2.25609e-43	N/A	N/A
PHROG	UHGV-0020101_21	phrog_4433	84.8	8.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0020101_21	742738.HMPREF9460_01792	123.0	5.64e-33	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0020101_21	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0020101_21	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_22	phrog_8470	214.1	0	N/A	unknown function
UniRef90	UHGV-0020101_22	UniRef90_UPI000E4BB21C	651.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0020101_22	742733.HMPREF9469_00219	318.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0020101_22	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0020101_22	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_23	phrog_15077	102.5	7.6e-30	N/A	unknown function
UniRef90	UHGV-0020101_23	UniRef90_A0A174WLY0	253.0	0	N/A	N/A
eggNOG-mapper	UHGV-0020101_23	483218.BACPEC_01165	220.0	0	N/A	N/A
structural_annotation	UHGV-0020101_23	PF11300,NF033725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020101_24	UniRef90_UPI00164A90AD	121.0	5.8e-33	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0020101_24	1235800.C819_02254	109.0	7.26e-29	HNH nucleases	N/A
structural_annotation	UHGV-0020101_25	PF09889,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_27	phrog_986	105.9	2.6e-31	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020101_27	UniRef90_U2DIF7	92.0	1.32e-22	ASCH domain protein	N/A
eggNOG-mapper	UHGV-0020101_27	1204534.J9QD24_9CAUD	83.2	5.07e-20	N/A	N/A
Pfam	UHGV-0020101_27	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0020101_27	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_28	phrog_20730	114.4	4.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0020101_28	1235799.C818_02666	120.0	1.03e-32	N/A	N/A
KOfam	UHGV-0020101_29	K07451	40.7	0.000000000038	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0020101_29	phrog_2118	117.1	1.6e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020101_29	UniRef90_A0A3R6HC40	245.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0020101_29	742740.HMPREF9474_03129	234.0	0	HNH endonuclease	N/A
Pfam	UHGV-0020101_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0020101_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0020101_29	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_31	phrog_8680	260.3	0	N/A	unknown function
UniRef90	UHGV-0020101_31	UniRef90_A0A3R6K733	394.0	0	N/A	N/A
eggNOG-mapper	UHGV-0020101_31	411470.RUMGNA_02208	282.0	0	N/A	N/A
Pfam	UHGV-0020101_31	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0020101_31	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_33	phrog_9479	136.0	2e-40	N/A	unknown function
UniRef90	UHGV-0020101_33	UniRef90_A0A2N0UXN8	137.0	1.51e-39	Ntox24 domain-containing protein	N/A
structural_annotation	UHGV-0020101_33	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_35	phrog_33130	71.6	7.2e-21	N/A	unknown function
UniRef90	UHGV-0020101_35	UniRef90_A0A3B9CD52	68.6	0.000000000000225	S1-like domain-containing protein	N/A
structural_annotation	UHGV-0020101_35	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-0020101_36	K06909	372.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0020101_36	phrog_3717	149.7	1.26117e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0020101_36	UniRef90_UPI000E54849E	782.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0020101_36	33035.JPJF01000106_gene3136	680.0	0	Terminase small subunit	N/A
Pfam	UHGV-0020101_36	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0020101_36	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0020101_36	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0020101_36	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0020101_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0020101_36	PF04466,PF17288,PF06056,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_37	phrog_533	259.8	0	portal protein	head and packaging
UniRef90	UHGV-0020101_37	UniRef90_A0A1C6CDM8	391.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0020101_37	33035.JPJF01000106_gene3135	390.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0020101_37	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_38	phrog_581	255.1	0	minor head protein	head and packaging
UniRef90	UHGV-0020101_38	UniRef90_A0A412EKN3	299.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0020101_38	33035.JPJF01000106_gene3134	274.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0020101_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0020101_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020101_38	PF06152	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020101_39	UniRef90_A0A6L5YME3	61.2	0.0000000000276	Conjugal transfer protein	N/A
eggNOG-mapper	UHGV-0020101_39	1235835.C814_02704	50.8	0.0000000694	Cysteine-rich KTR	N/A
Pfam	UHGV-0020101_39	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0020101_39	PF14205,COG4416	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020101_40	UniRef90_UPI001C0EBA51	108.0	5.98e-26	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0020101_40	1125725.HMPREF1325_1331	59.3	0.0000000256	Phage minor structural protein GP20	N/A
PHROG	UHGV-0020101_41	phrog_283	256.1	0	major head protein	head and packaging
UniRef90	UHGV-0020101_41	UniRef90_A0A316RCU2	410.0	0	P22 coat protein	N/A
eggNOG-mapper	UHGV-0020101_41	1297617.JPJD01000059_gene2633	399.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0020101_41	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0020101_41	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_42	phrog_541	93.9	1.3e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0020101_42	476272.RUMHYD_01778	63.2	0.000000000145	N/A	N/A
PHROG	UHGV-0020101_43	phrog_3366	88.8	5.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0020101_43	33035.JPJF01000106_gene3129	89.0	6.43e-21	N/A	N/A
structural_annotation	UHGV-0020101_43	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_44	phrog_556	66.7	2.8e-19	minor head protein	head and packaging
UniRef90	UHGV-0020101_44	UniRef90_UPI000E4989EB	124.0	1.57e-33	minor capsid protein	N/A
eggNOG-mapper	UHGV-0020101_44	476272.RUMHYD_01780	148.0	1.02295e-43	N/A	N/A
Pfam	UHGV-0020101_44	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0020101_44	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_45	phrog_3266	73.1	3.1e-21	tail completion	connector
eggNOG-mapper	UHGV-0020101_45	476272.RUMHYD_01781	153.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0020101_45	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_46	phrog_3099	116.6	1.8e-34	N/A	unknown function
eggNOG-mapper	UHGV-0020101_46	1160721.RBI_II00532	142.0	4.06993e-41	N/A	N/A
structural_annotation	UHGV-0020101_46	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_47	phrog_11299	88.3	6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0020101_47	1449050.JNLE01000003_gene3883	72.8	0.0000000000000378	N/A	N/A
structural_annotation	UHGV-0020101_47	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_48	phrog_706	143.7	9.69699e-43	N/A	unknown function
UniRef90	UHGV-0020101_48	UniRef90_UPI0011DC8B0C	219.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0020101_48	411902.CLOBOL_00127	193.0	0	N/A	N/A
Pfam	UHGV-0020101_48	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0020101_48	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_49	phrog_1535	193.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0020101_49	UniRef90_A0A173WM72	230.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0020101_49	33035.JPJF01000043_gene1003	187.0	0	phage tail tape measure protein	N/A
COG	UHGV-0020101_49	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020101_50	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_51	phrog_13879	268.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0020101_51	1232449.BAHV02000010_gene2725	159.0	1.65e-39	N/A	N/A
structural_annotation	UHGV-0020101_51	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
KOfam	UHGV-0020101_53	K13276	64.7	2e-19	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0020101_53	phrog_11157	221.0	0	N/A	unknown function
UniRef90	UHGV-0020101_53	UniRef90_A0A416HMQ3	347.0	0	Big_13 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020101_53	1286171.EAL2_c11220	292.0	0	amine dehydrogenase activity	N/A
Pfam	UHGV-0020101_53	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
COG	UHGV-0020101_53	COG3391	N/A	N/A	DNA-binding beta-propeller fold protein YncE	N/A
structural_annotation	UHGV-0020101_53	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_54	phrog_18725	94.6	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0020101_54	1120746.CCNL01000014_gene2212	80.1	2.33e-16	N/A	N/A
structural_annotation	UHGV-0020101_54	PF13754,COG2372	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020101_55	PF00386	N/A	N/A	N/A	N/A
PHROG	UHGV-0020101_57	phrog_4105	99.1	2.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0020101_57	411459.RUMOBE_00911	152.0	0	N/A	N/A
PHROG	UHGV-0020101_58	phrog_1129	90.4	1e-26	holin	lysis
UniRef90	UHGV-0020101_58	UniRef90_A0A412KF76	183.0	0	Holin	N/A
eggNOG-mapper	UHGV-0020101_58	1256908.HMPREF0373_00463	159.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0020101_58	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0020101_58	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0020101_59	K01448	103.0	3.4e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0020101_59	phrog_435	156.4	0	endolysin	lysis
UniRef90	UHGV-0020101_59	UniRef90_UPI000E552B56	438.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0020101_59	1235800.C819_02218	194.0	0	PFAM Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0020101_59	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0020101_59	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0020101_59	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A