UHGV-0020127 (vOTU-043196)

Viral Genome: UHGV-0020127

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0020127
vOTU ID	vOTU-043196
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_15_1726__NODE_2133_length_39095_cov_231.365344
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9738
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.8
Jumbo phage	No

Genome content
Genome length (bp)	39,060
GC content	57.24%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	91%
Average CDS length (bps)	623.26
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0020127_1	phrog_4433	181.4	0	N/A	unknown function
UniRef90	UHGV-0020127_1	UniRef90_A0A6M5C839	96.7	4.91e-22	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0020127_1	665950.HMPREF1025_01373	111.0	2.04e-27	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0020127_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
KOfam	UHGV-0020127_6	K22300	63.8	3.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0020127_6	phrog_4	50.8	0.000000000000042	transcriptional repressor	transcription regulation
UniRef90	UHGV-0020127_6	UniRef90_A0A174LY22	120.0	1.13e-32	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-0020127_6	445972.ANACOL_03315	119.0	2.69e-33	N/A	N/A
Pfam	UHGV-0020127_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020127_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020127_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0020127_9	PF02150	N/A	N/A	RNA polymerases M/15 Kd subunit	RNA_POL_M_15KD
KOfam	UHGV-0020127_11	K22300	40.7	0.00000000004	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0020127_11	UniRef90_A0A354UTE4	111.0	3.82e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0020127_11	748224.HMPREF9436_01444	87.4	3.33e-20	N/A	N/A
COG	UHGV-0020127_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020127_11	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0020127_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0020127_14	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0020127_15	K14059	132.3	5.1e-39	int; integrase	N/A
PHROG	UHGV-0020127_15	phrog_1	150.7	1.26117e-44	integrase	integration and excision
UniRef90	UHGV-0020127_15	UniRef90_A0A3D3Y0G6	493.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0020127_15	693746.OBV_41260	297.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0020127_15	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0020127_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0020127_15	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0020127_15	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0020127_16	phrog_15863	146.1	1.20512e-43	N/A	unknown function
UniRef90	UHGV-0020127_16	UniRef90_A0A1Y3R3M0	188.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0020127_16	693746.OBV_01780	176.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0020127_16	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-0020127_19	phrog_422	105.5	5.1e-31	major head protein	head and packaging
UniRef90	UHGV-0020127_19	UniRef90_A0A2V2DLC4	243.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0020127_19	1408437.JNJN01000001_gene1710	186.0	0	N/A	N/A
Pfam	UHGV-0020127_19	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0020127_19	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0020127_21	phrog_156	107.1	2e-32	portal protein	head and packaging
eggNOG-mapper	UHGV-0020127_21	693746.OBV_01670	522.0	0	N/A	N/A
structural_annotation	UHGV-0020127_21	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0020127_25	phrog_1863	61.8	6.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0020127_25	665956.HMPREF1032_03922	85.5	8.99e-21	N/A	N/A
PHROG	UHGV-0020127_26	phrog_881	89.0	2.4e-26	holin	lysis
UniRef90	UHGV-0020127_26	UniRef90_UPI001CF8C011	78.2	1.5e-17	phage holin	N/A
eggNOG-mapper	UHGV-0020127_26	476272.RUMHYD_01966	73.2	2.66e-16	Putative phage holin Dp-1	N/A
Pfam	UHGV-0020127_26	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0020127_26	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0020127_27	K07273	145.7	4.30199e-43	acm; lysozyme	N/A
PHROG	UHGV-0020127_27	phrog_291	133.0	2.6e-39	endolysin	lysis
UniRef90	UHGV-0020127_27	UniRef90_UPI00177FDC19	177.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0020127_27	411470.RUMGNA_00451	142.0	1.5e-37	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
Pfam	UHGV-0020127_27	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0020127_27	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0020127_27	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0020127_28	K06909	139.8	2.4e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0020127_28	phrog_979	130.0	1e-39	terminase large subunit	head and packaging
UniRef90	UHGV-0020127_28	UniRef90_A0A1Y3RJJ5	593.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020127_28	693746.OBV_01690	564.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0020127_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0020127_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0020127_28	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020127_29	UniRef90_A0A4D7ASB8	293.0	0	N/A	N/A
eggNOG-mapper	UHGV-0020127_29	693746.OBV_01680	329.0	0	N/A	N/A
structural_annotation	UHGV-0020127_29	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020127_30	1519439.JPJG01000011_gene57	119.0	1.05e-32	N/A	N/A
structural_annotation	UHGV-0020127_30	PF11650	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020127_32	1519439.JPJG01000011_gene53	256.0	0	N/A	N/A
UniRef90	UHGV-0020127_33	UniRef90_U2R3E6	51.2	0.000000843	KORA domain-containing protein	N/A
structural_annotation	UHGV-0020127_33	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0020127_37	K01160	63.6	5e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0020127_37	phrog_140	110.4	1.4e-32	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020127_37	UniRef90_D4N1J6	136.0	2.14e-38	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0020127_37	545697.HMPREF0216_02819	110.0	8.18e-29	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0020127_37	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0020127_37	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0020127_37	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0020127_38	K03111	59.1	1.3e-16	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0020127_38	phrog_44	83.7	3.4e-24	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020127_38	UniRef90_A0A1C6GZX8	72.4	0.00000000000014	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020127_38	350688.Clos_1881	70.1	0.000000000000129	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0020127_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0020127_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0020127_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0020127_38	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0020127_41	phrog_38832	46.6	0.00000000000037	N/A	unknown function
eggNOG-mapper	UHGV-0020127_41	665956.HMPREF1032_03087	80.9	5.79e-17	N/A	N/A
Pfam	UHGV-0020127_42	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0020127_42	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0020127_43	phrog_954	193.8	0	DNA methyltransferase	other
UniRef90	UHGV-0020127_43	UniRef90_A0A810Q0N4	303.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0020127_43	411461.DORFOR_01143	279.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0020127_43	MTase_II_00074	199.1	0	Type II methyltransferase	RM
Pfam	UHGV-0020127_43	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0020127_43	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0020127_43	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0020127_44	phrog_24490	55.6	7.2e-16	N/A	unknown function
KOfam	UHGV-0020127_46	K22300	45.7	0.0000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0020127_46	UniRef90_A0A3C2EHS6	53.9	0.00000113	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0020127_46	1140002.I570_02606	53.9	0.000000383	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0020127_46	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0020127_46	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0020127_48	phrog_16304	82.0	7.6e-24	N/A	unknown function
UniRef90	UHGV-0020127_48	UniRef90_UPI001D074B07	120.0	1.32e-29	N/A	N/A
eggNOG-mapper	UHGV-0020127_48	445972.ANACOL_01828	110.0	8.97e-26	N/A	N/A
Pfam	UHGV-0020127_48	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0020127_48	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0020127_49	K03111	138.2	8.80001e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0020127_49	phrog_44	144.2	7.39886e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020127_49	UniRef90_R6LVK0	209.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020127_49	693746.OBV_12860	207.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0020127_49	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0020127_49	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0020127_49	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0020127_49	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0020127_49	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0020127_50	K07455	292.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0020127_50	phrog_148	275.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020127_50	UniRef90_A0A3D3Y007	452.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0020127_50	428125.CLOLEP_01822	345.0	0	RecT family	N/A
Pfam	UHGV-0020127_50	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0020127_50	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0020127_50	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0020127_50	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0020127_51	phrog_434	304.6	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020127_51	UniRef90_A0A3D3XZF3	449.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0020127_51	1121344.JHZO01000003_gene985	283.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0020127_51	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0020127_51	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0020127_51	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0020127_51	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0020127_54	phrog_4973	57.7	1.9e-16	N/A	unknown function
UniRef90	UHGV-0020127_54	UniRef90_UPI001D0904CC	69.7	0.0000000000000513	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0020127_54	880073.Calab_0752	47.4	0.00000466	Helix-turn-helix domain	N/A
Pfam	UHGV-0020127_54	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0020127_54	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020127_55	PF11112,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0020127_57	phrog_27197	65.1	1.1e-18	N/A	unknown function
COG	UHGV-0020127_57	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A