UHGV-0020164 (vOTU-079951)

Viral Genome: UHGV-0020164

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0020164
vOTU ID	vOTU-079951
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_O_4_1196__NODE_2527_length_38939_cov_17.880706
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91 (High-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9793
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.57
Jumbo phage	No

Genome content
Genome length (bp)	38,939
GC content	54.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	95%
Average CDS length (bps)	725.94
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0020164_1	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0020164_5	K06909	137.1	1.50001e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0020164_5	phrog_979	131.5	9.10003e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0020164_5	UniRef90_A0A3D5TIM8	630.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0020164_5	1410650.JHWL01000003_gene2834	604.0	0	N/A	N/A
Pfam	UHGV-0020164_5	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0020164_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0020164_5	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_6	phrog_156	324.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0020164_6	1410650.JHWL01000003_gene2833	571.0	0	N/A	N/A
structural_annotation	UHGV-0020164_6	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0020164_7	K07584	42.9	0.0000000000082	N/A	N/A
PHROG	UHGV-0020164_7	phrog_4478	54.4	0.0000000000000015	peptidase	other
Pfam	UHGV-0020164_7	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0020164_7	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020164_7	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_8	phrog_13908	212.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0020164_8	1410650.JHWL01000003_gene2831	97.4	1.12e-20	N/A	N/A
PHROG	UHGV-0020164_9	phrog_1357	275.2	0	major head protein	head and packaging
UniRef90	UHGV-0020164_9	UniRef90_UPI001CF8B373	378.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0020164_9	748224.HMPREF9436_01399	344.0	0	N/A	N/A
NCBIFam	UHGV-0020164_9	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0020164_9	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_10	phrog_15239	51.3	0.000000000000018	N/A	unknown function
PHROG	UHGV-0020164_11	phrog_12105	125.8	1.9e-37	N/A	unknown function
eggNOG-mapper	UHGV-0020164_11	1226322.HMPREF1545_03850	66.2	0.00000000000302	N/A	N/A
PHROG	UHGV-0020164_12	phrog_511	191.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0020164_12	1519439.JPJG01000060_gene1903	306.0	0	N/A	N/A
structural_annotation	UHGV-0020164_12	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_15	phrog_15594	42.5	0.000000000011	N/A	unknown function
structural_annotation	UHGV-0020164_15	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_17	phrog_24103	73.8	2.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0020164_17	665956.HMPREF1032_02937	83.6	6.67e-16	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0020164_17	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0020164_19	PF03425,NF038128,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_21	phrog_2310	54.3	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0020164_21	1151292.QEW_0364	49.7	0.000000268	N/A	N/A
eggNOG-mapper	UHGV-0020164_22	1410650.JHWL01000003_gene2815	112.0	2.02e-25	N/A	N/A
PHROG	UHGV-0020164_23	phrog_22978	726.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0020164_23	1226322.HMPREF1545_00787	99.8	1.94e-17	N/A	N/A
Pfam	UHGV-0020164_23	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
Pfam	UHGV-0020164_23	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
KOfam	UHGV-0020164_24	K08640	83.2	1.9e-24	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0020164_24	phrog_2649	58.4	1.9e-18	endolysin	lysis
UniRef90	UHGV-0020164_24	UniRef90_UPI001C12323B	238.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0020164_24	931626.Awo_c26840	108.0	6.82e-27	Peptidase M15	N/A
Pfam	UHGV-0020164_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0020164_24	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0020164_24	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020164_24	PF08291,PF01471,TIGR02869,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_25	phrog_4105	102.6	2.3e-30	N/A	unknown function
UniRef90	UHGV-0020164_25	UniRef90_A0A8D9UHA9	130.0	1.38e-37	Holin protein	N/A
eggNOG-mapper	UHGV-0020164_25	742733.HMPREF9469_05011	139.0	1.19993e-41	N/A	N/A
PHROG	UHGV-0020164_26	phrog_1129	84.3	8.3e-25	holin	lysis
UniRef90	UHGV-0020164_26	UniRef90_UPI001F43F0BF	105.0	5.79e-28	phage holin family protein	N/A
eggNOG-mapper	UHGV-0020164_26	1256908.HMPREF0373_00463	95.9	6.97e-25	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0020164_26	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0020164_26	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020164_27	PF01047,MF_00620,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_28	phrog_3754	94.8	8.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-0020164_28	476272.RUMHYD_01764	152.0	0	N/A	N/A
PHROG	UHGV-0020164_29	phrog_21718	76.8	2.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0020164_29	476272.RUMHYD_01768	79.7	2.12e-17	N/A	N/A
PHROG	UHGV-0020164_30	phrog_22984	64.5	1.6e-18	N/A	unknown function
PHROG	UHGV-0020164_31	phrog_16490	92.1	9.9e-28	N/A	unknown function
UniRef90	UHGV-0020164_31	UniRef90_A0A7M1RTU9	72.4	0.0000000000228	Spike protein/glycoprotein	N/A
eggNOG-mapper	UHGV-0020164_31	1408437.JNJN01000043_gene803	90.5	3.67e-19	N/A	N/A
PHROG	UHGV-0020164_32	phrog_20016	166.5	0	N/A	unknown function
UniRef90	UHGV-0020164_32	UniRef90_A0A345BPX4	150.0	6.44597e-44	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0020164_32	1226322.HMPREF1545_00077	142.0	1.24996e-41	N/A	N/A
structural_annotation	UHGV-0020164_32	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020164_33	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0020164_34	K14059	147.2	1.79366e-43	int; integrase	N/A
PHROG	UHGV-0020164_34	phrog_1	154.3	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0020164_34	UniRef90_A0A3D3Y0G6	308.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0020164_34	693746.OBV_41260	232.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0020164_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0020164_34	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0020164_34	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0020164_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0020164_36	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0020164_38	K22300	52.1	0.000000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0020164_38	phrog_2967	41.0	0.000000000035	transcriptional regulator	transcription regulation
UniRef90	UHGV-0020164_38	UniRef90_A0A1Y4L0A2	109.0	1.79e-28	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0020164_38	903814.ELI_3237	68.9	0.000000000000269	sequence-specific DNA binding	N/A
Pfam	UHGV-0020164_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020164_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020164_38	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0020164_39	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0020164_39	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
structural_annotation	UHGV-0020164_43	COG2888	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_44	phrog_253	118.7	4.2e-35	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020164_44	UniRef90_A0A7G9G713	117.0	2.62e-30	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0020164_44	397290.C810_05162	127.0	4.81e-35	Siphovirus Gp157	N/A
Pfam	UHGV-0020164_44	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0020164_44	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_46	phrog_2872	219.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020164_46	UniRef90_A0A843H8D6	278.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0020164_46	1415774.U728_1119	271.0	0	AAA domain	N/A
structural_annotation	UHGV-0020164_46	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_47	phrog_18107	97.7	1.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0020164_47	476272.RUMHYD_02831	166.0	0	N/A	N/A
structural_annotation	UHGV-0020164_47	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_48	phrog_190	111.6	6.1e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020164_48	UniRef90_A0A3R6WN18	147.0	3.36312e-43	N/A	N/A
eggNOG-mapper	UHGV-0020164_48	106648.BBLJ01000054_gene3803	90.9	1.08e-21	N/A	N/A
Pfam	UHGV-0020164_48	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0020164_48	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0020164_49	phrog_16304	129.0	4.2e-38	N/A	unknown function
UniRef90	UHGV-0020164_49	UniRef90_UPI0011C97B10	99.0	1.41e-21	N/A	N/A
eggNOG-mapper	UHGV-0020164_49	629265.PMA4326_09935	84.7	1.06e-16	N/A	N/A
Pfam	UHGV-0020164_49	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0020164_49	COG3756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020164_49	PF19808	N/A	N/A	N/A	N/A