UHGV-0020215 (vOTU-078623)

Viral Genome: UHGV-0020215

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0020215
vOTU ID	vOTU-078623
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_J_22_1662__NODE_3193_length_34873_cov_9.825267
Associated BioSample	SAMEA4765942
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.49 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9763
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.36
Jumbo phage	No

Genome content
Genome length (bp)	34,873
GC content	47.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	94%
Average CDS length (bps)	562.19
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0020215_1	PF03540	N/A	N/A	Transcription initiation factor TFIID 23-30kDa subunit	TFIID_30kDa
NCBIFam	UHGV-0020215_1	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
PHROG	UHGV-0020215_3	phrog_428	115.0	8.9e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020215_3	UniRef90_UPI00016BD1EE	105.0	3.83e-25	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0020215_3	190478.Q8SBM0_9CAUD	106.0	7.62e-26	calcium ion binding	N/A
Pfam	UHGV-0020215_3	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0020215_3	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-0020215_5	PF07073,COG4568	N/A	N/A	N/A	N/A
KOfam	UHGV-0020215_11	K22300	58.1	1.8e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0020215_11	phrog_8	51.2	0.0000000000000059	transcriptional regulator	transcription regulation
UniRef90	UHGV-0020215_11	UniRef90_R5R2P6	103.0	9.07e-26	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0020215_11	903814.ELI_1263	92.0	3.98e-22	Helix-turn-helix domain	N/A
Pfam	UHGV-0020215_11	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0020215_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020215_11	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020215_12	471855.Shel_12440	75.5	0.00000000001	TM2 domain	N/A
COG	UHGV-0020215_12	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0020215_15	K15773	48.4	0.0000000000001	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0020215_15	phrog_29047	46.0	0.00000000000069	N/A	unknown function
UniRef90	UHGV-0020215_15	UniRef90_J9G4U5	79.0	4.9e-17	Protein containing Helix-turn-helix type 3 domain protein	N/A
eggNOG-mapper	UHGV-0020215_15	537013.CLOSTMETH_01694	69.7	0.0000000000000358	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0020215_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020215_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0020215_17	K15773	45.8	0.00000000000084	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0020215_17	phrog_1373	52.4	9.6e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0020215_17	1508644.SFBmNL_01554	57.8	0.000000431	N/A	N/A
Pfam	UHGV-0020215_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020215_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020215_19	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0020215_20	K06400	335.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0020215_20	phrog_95	314.1	0	integrase	integration and excision
UniRef90	UHGV-0020215_20	UniRef90_UPI00189960B8	378.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0020215_20	1235835.C814_03413	338.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0020215_20	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0020215_20	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0020215_20	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0020215_20	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0020215_20	PF00239,PF07508,PF19962,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020215_21	445972.ANACOL_01884	69.3	0.000000000000179	N/A	N/A
structural_annotation	UHGV-0020215_23	PF18573,NF033147	N/A	N/A	N/A	N/A
Pfam	UHGV-0020215_25	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0020215_25	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
KOfam	UHGV-0020215_27	K19304	104.0	1.9e-30	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0020215_27	phrog_7767	107.5	1.1e-31	metallo-endopeptidase	other
UniRef90	UHGV-0020215_27	UniRef90_A0A8A2VU94	158.0	1.4013e-45	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0020215_27	665956.HMPREF1032_00102	144.0	1.22e-39	heme binding	N/A
Pfam	UHGV-0020215_27	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0020215_27	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0020215_27	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0020215_27	PF01551,MF_00664,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0020215_28	phrog_4105	84.3	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0020215_28	397288.C806_00056	94.4	1.17e-23	N/A	N/A
PHROG	UHGV-0020215_31	phrog_38190	79.8	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0020215_31	762211.BSTEL_0610	80.5	0.00000000000000103	N/A	N/A
PHROG	UHGV-0020215_34	phrog_26795	117.1	6.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-0020215_34	1273742.M1IQS1_9CAUD	126.0	5.69e-31	N/A	N/A
structural_annotation	UHGV-0020215_34	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0020215_36	phrog_10613	77.3	1.1e-22	tail length tape measure protein	tail
UniRef90	UHGV-0020215_36	UniRef90_A0A174XMM8	63.5	0.000000678	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-0020215_36	498761.HM1_2873	82.0	0.000000000000226	nuclear chromosome segregation	N/A
COG	UHGV-0020215_36	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0020215_36	PF20155	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020215_38	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0020215_39	phrog_88	88.1	9.8e-26	major tail protein	tail
UniRef90	UHGV-0020215_39	UniRef90_UPI00189BD00F	120.0	6.84e-30	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0020215_39	509191.AEDB02000020_gene3252	80.1	4.99e-16	TIGRFAM phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0020215_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0020215_39	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020215_40	UniRef90_UPI0013D62C30	75.5	0.0000000000000446	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0020215_40	1121289.JHVL01000019_gene663	60.8	0.00000000214	TIGRFAM phage protein, HK97 gp10 family	N/A
Pfam	UHGV-0020215_40	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
eggNOG-mapper	UHGV-0020215_41	1232446.BAIE02000002_gene829	53.5	0.000000122	N/A	N/A
structural_annotation	UHGV-0020215_41	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0020215_42	phrog_19734	58.8	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0020215_42	349161.Dred_2602	68.9	0.000000000000166	N/A	N/A
structural_annotation	UHGV-0020215_42	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0020215_43	phrog_2550	45.6	0.00000000000083	N/A	unknown function
structural_annotation	UHGV-0020215_43	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0020215_44	phrog_10	166.6	0	major head protein	head and packaging
UniRef90	UHGV-0020215_44	UniRef90_A6XMJ6	314.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0020215_44	396034.A6XMJ6_9CAUD	314.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0020215_44	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0020215_44	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0020215_44	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0020215_45	K06904	129.9	2.6e-38	N/A	N/A
PHROG	UHGV-0020215_45	phrog_80	142.2	4.90034e-42	head maturation protease	head and packaging
UniRef90	UHGV-0020215_45	UniRef90_UPI0008716C68	173.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0020215_45	1033744.CAEL01000029_gene1283	156.0	1.4013e-45	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0020215_45	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0020215_45	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0020215_45	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0020215_45	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0020215_46	phrog_12	181.3	0	portal protein	head and packaging
UniRef90	UHGV-0020215_46	UniRef90_A0A0L6JH89	468.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0020215_46	398512.JQKC01000009_gene449	468.0	0	Phage portal protein	N/A
Pfam	UHGV-0020215_46	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0020215_46	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0020215_46	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0020215_46	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0020215_47	phrog_9	289.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0020215_47	UniRef90_A0A378XW79	701.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0020215_47	491915.Aflv_0661	687.0	0	Phage Terminase	N/A
Pfam	UHGV-0020215_47	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0020215_47	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0020215_47	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0020215_47	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0020215_48	phrog_21498	310.9	0	N/A	unknown function
UniRef90	UHGV-0020215_48	UniRef90_F0NXT0	236.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0020215_48	865938.Weevi_0265	236.0	0	DNA binding	N/A
COG	UHGV-0020215_48	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-0020215_49	phrog_361	64.7	1.5e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0020215_49	UniRef90_A0A1X2FVG6	66.2	0.00000000000923	Terminase	N/A
eggNOG-mapper	UHGV-0020215_49	1121105.ATXL01000027_gene741	57.0	0.00000000443	Phage terminase, small subunit	N/A
Pfam	UHGV-0020215_49	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0020215_49	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0020215_49	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0020215_50	K07451	48.1	0.0000000000002	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0020215_50	phrog_119	85.5	6.3e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020215_50	UniRef90_A0A2V2GQ57	119.0	2.12e-33	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0020215_50	1226322.HMPREF1545_00111	99.8	2.09e-26	HNH nucleases	N/A
Pfam	UHGV-0020215_50	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0020215_50	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0020215_51	UniRef90_UPI001009DF1D	52.0	0.00000383	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0020215_51	1121335.Clst_0383	54.3	0.0000000932	N/A	N/A
PHROG	UHGV-0020215_52	phrog_824	126.1	1.5e-37	N/A	unknown function
UniRef90	UHGV-0020215_52	UniRef90_A0A413FXK6	133.0	9.38e-38	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0020215_52	1232452.BAIB02000007_gene1645	120.0	5.15e-33	VRR_NUC	N/A
Pfam	UHGV-0020215_52	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0020215_53	phrog_3584	186.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0020215_53	1514668.JOOA01000001_gene223	139.0	6.35e-37	N/A	N/A
structural_annotation	UHGV-0020215_53	PF21578,NF033538	N/A	N/A	N/A	N/A
KOfam	UHGV-0020215_55	K03111	106.2	5.1e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0020215_55	phrog_44	103.1	3.7e-30	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020215_55	UniRef90_R7EVC4	125.0	5.84e-34	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020215_55	445972.ANACOL_04434	105.0	4.48e-27	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0020215_55	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0020215_55	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0020215_55	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0020215_55	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0020215_55	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0020215_58	PF03540	N/A	N/A	Transcription initiation factor TFIID 23-30kDa subunit	TFIID_30kDa
NCBIFam	UHGV-0020215_58	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A