UHGV-0020228 (vOTU-043204)

Viral Genome: UHGV-0020228

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0020228
vOTU ID	vOTU-043204
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_G_6_1094__NODE_1655_length_37219_cov_29.991869
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.49
Jumbo phage	No

Genome content
Genome length (bp)	37,142
GC content	57.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	93%
Average CDS length (bps)	586.37
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0020228_4	PF01381,NF040522,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020228_7	1378168.N510_03079	84.7	3.12e-17	N/A	N/A
eggNOG-mapper	UHGV-0020228_8	1408437.JNJN01000043_gene802	149.0	5.60519e-45	N/A	N/A
PHROG	UHGV-0020228_9	phrog_16490	76.2	2e-38	N/A	unknown function
eggNOG-mapper	UHGV-0020228_9	1408437.JNJN01000043_gene803	133.0	4.06e-35	N/A	N/A
eggNOG-mapper	UHGV-0020228_13	693746.OBV_19020	60.8	0.0000000000351	N/A	N/A
KOfam	UHGV-0020228_15	K19304	116.1	4e-34	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0020228_15	phrog_7767	103.5	1.3e-30	metallo-endopeptidase	other
UniRef90	UHGV-0020228_15	UniRef90_R7HKN3	80.9	0.000000000000361	Peptidase M23	N/A
eggNOG-mapper	UHGV-0020228_15	1121864.OMO_01118	110.0	2.69e-23	Peptidase family M23	N/A
Pfam	UHGV-0020228_15	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0020228_15	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0020228_15	PF01551,PF09992,NF040883,COG0739,COG3698	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_16	phrog_4105	73.4	2.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0020228_16	610130.Closa_0762	74.7	5.3e-16	N/A	N/A
PHROG	UHGV-0020228_19	phrog_26795	107.6	5.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-0020228_19	796940.HMPREF9628_00133	117.0	2.75e-27	N/A	N/A
structural_annotation	UHGV-0020228_19	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020228_20	PF06995,PF02010,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0020228_21	K12478	46.6	0.000000000000086	EEA1; early endosome antigen 1	N/A
PHROG	UHGV-0020228_21	phrog_10613	68.0	1.7e-35	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0020228_21	1123263.AUKY01000046_gene477	69.3	0.00000000229	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0020228_21	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0020228_23	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_24	phrog_88	91.5	9.5e-27	major tail protein	tail
UniRef90	UHGV-0020228_24	UniRef90_S0FUN2	132.0	1.19e-35	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0020228_24	1195236.CTER_5106	132.0	2e-36	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0020228_24	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0020228_24	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020228_24	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020228_25	908340.HMPREF9406_2573	56.6	0.0000000802	N/A	N/A
structural_annotation	UHGV-0020228_25	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020228_26	908340.HMPREF9406_2574	67.8	0.000000000000526	N/A	N/A
structural_annotation	UHGV-0020228_26	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_27	phrog_19734	61.3	1.9e-17	N/A	unknown function
UniRef90	UHGV-0020228_27	UniRef90_A0A316NL63	78.2	2.18e-16	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0020228_27	349161.Dred_2602	58.2	0.00000000282	N/A	N/A
structural_annotation	UHGV-0020228_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_28	phrog_2550	53.5	0.0000000000000027	N/A	unknown function
eggNOG-mapper	UHGV-0020228_28	365048.Q0H259_9CAUD	53.9	0.0000000252	Phage gp6-like head-tail connector protein	N/A
structural_annotation	UHGV-0020228_28	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_29	phrog_10	153.4	0	major head protein	head and packaging
UniRef90	UHGV-0020228_29	UniRef90_A0A1S2M036	305.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0020228_29	396034.A6XMJ6_9CAUD	294.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0020228_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0020228_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0020228_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0020228_30	K06904	146.3	2.60642e-43	N/A	N/A
PHROG	UHGV-0020228_30	phrog_80	161.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0020228_30	UniRef90_A0A7C6PUY5	211.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0020228_30	913865.DOT_5634	206.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0020228_30	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0020228_30	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0020228_30	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0020228_30	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_31	phrog_12	148.8	2.66247e-44	portal protein	head and packaging
UniRef90	UHGV-0020228_31	UniRef90_A0A0L6JH89	425.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0020228_31	398512.JQKC01000009_gene449	425.0	0	Phage portal protein	N/A
Pfam	UHGV-0020228_31	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0020228_31	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0020228_31	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0020228_31	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_32	phrog_9	293.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0020228_32	UniRef90_B7GIM6	726.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0020228_32	491915.Aflv_0661	726.0	0	Phage Terminase	N/A
Pfam	UHGV-0020228_32	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0020228_32	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0020228_32	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0020228_32	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_33	phrog_21498	286.1	0	N/A	unknown function
UniRef90	UHGV-0020228_33	UniRef90_C7MM70	218.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0020228_33	1095750.HMPREF9970_2290	231.0	0	chromosome segregation	N/A
COG	UHGV-0020228_33	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0020228_33	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_34	phrog_361	67.0	3.1e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0020228_34	UniRef90_A0A7C6PWI7	87.8	3.77e-20	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0020228_34	913865.DOT_5637	65.5	0.00000000000357	phage terminase small subunit	N/A
Pfam	UHGV-0020228_34	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0020228_34	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0020228_34	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_36	phrog_3584	182.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0020228_36	1519439.JPJG01000060_gene1883	152.0	3.05063e-42	N/A	N/A
structural_annotation	UHGV-0020228_36	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_37	phrog_474	101.7	1.2e-29	phosphofructokinase	other
UniRef90	UHGV-0020228_37	UniRef90_A0A3C1WR20	95.9	1e-23	N/A	N/A
eggNOG-mapper	UHGV-0020228_37	1123247.AUIJ01000002_gene2234	73.6	8.73e-16	N/A	N/A
Pfam	UHGV-0020228_37	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0020228_37	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_45	phrog_15768	85.3	9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0020228_45	748224.HMPREF9436_03357	67.0	0.00000000011	N/A	N/A
PHROG	UHGV-0020228_50	phrog_111	170.7	0	DNA methyltransferase	other
UniRef90	UHGV-0020228_50	UniRef90_A0A2V2F8D8	229.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0020228_50	445972.ANACOL_03344	208.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0020228_50	oMTase_00015	181.0	0	orphan methyltransferase	RM
Pfam	UHGV-0020228_50	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
NCBIFam	UHGV-0020228_50	TIGR01712.1	N/A	N/A	phage N-6-adenine-methyltransferase	N/A
structural_annotation	UHGV-0020228_50	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0020228_54	K18830	41.6	0.000000000028	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0020228_54	UniRef90_R8W553	87.4	1.09e-19	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0020228_54	1203606.HMPREF1526_01317	87.4	1.83e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0020228_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020228_54	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020228_54	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020228_55	UniRef90_A0A0U5B9V3	75.5	0.00000000000661	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020228_55	795955.AFRW01000079_gene238	79.7	0.0000000000000393	TM2 domain	N/A
COG	UHGV-0020228_55	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020228_55	PF05962,MF_01591,COG3758	N/A	N/A	N/A	N/A
PHROG	UHGV-0020228_56	phrog_10292	42.6	0.0000000000069	N/A	unknown function
UniRef90	UHGV-0020228_56	UniRef90_UPI00037729FA	55.8	0.000000661	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020228_56	1121363.KB902197_gene1743	55.8	0.000000111	TM2 domain protein	N/A
Pfam	UHGV-0020228_56	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0020228_56	COG2314	N/A	N/A	N/A	N/A
Pfam	UHGV-0020228_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0020228_58	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0020228_59	K06400	348.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0020228_59	phrog_95	325.0	0	integrase	integration and excision
UniRef90	UHGV-0020228_59	UniRef90_UPI00189960B8	385.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0020228_59	1235835.C814_00825	353.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0020228_59	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0020228_59	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0020228_59	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0020228_59	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0020228_59	PF00239,PF07508,PF19962,NF041201,COG1961	N/A	N/A	N/A	N/A