UHGV-0020247 (vOTU-140155)

Viral Genome: UHGV-0020247

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0020247
vOTU ID	vOTU-140155
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_G_8_1096__NODE_4320_length_22620_cov_17.897307
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.77 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.6
Jumbo phage	No

Genome content
Genome length (bp)	22,620
GC content	57.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	29
CDS density	96%
Average CDS length (bps)	744.93
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0020247_1	K03465	98.0	1.2e-28	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0020247_1	phrog_85	80.4	2.2e-23	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020247_1	UniRef90_A0A357WZ47	238.0	0	INTEIN_C_TER domain-containing protein	N/A
eggNOG-mapper	UHGV-0020247_1	720554.Clocl_3035	129.0	3.65e-34	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0020247_1	PF01844	N/A	N/A	HNH endonuclease	HNH
Pfam	UHGV-0020247_1	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0020247_1	TIGR01443.1	N/A	N/A	intein C-terminal splicing region	N/A
COG	UHGV-0020247_1	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0020247_1	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_3	phrog_119	60.6	2.5e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020247_3	UniRef90_A0A2C4Q2R2	110.0	1.74e-29	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0020247_3	198094.BA_0461	106.0	9.97e-29	HNH endonuclease	N/A
Pfam	UHGV-0020247_3	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0020247_3	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0020247_4	phrog_1066	85.6	5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0020247_4	1094508.Tsac_2428	97.4	1.44e-24	N/A	N/A
structural_annotation	UHGV-0020247_4	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_5	phrog_9	393.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0020247_5	UniRef90_UPI001639DB9B	594.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0020247_5	315730.BcerKBAB4_3431	580.0	0	Terminase	N/A
Pfam	UHGV-0020247_5	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0020247_5	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0020247_5	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0020247_5	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_6	phrog_12	149.6	1.54143e-44	portal protein	head and packaging
UniRef90	UHGV-0020247_6	UniRef90_A0A1H4BNH5	307.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0020247_6	1094508.Tsac_2426	201.0	0	Portal protein	N/A
Pfam	UHGV-0020247_6	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0020247_6	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0020247_6	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0020247_7	K06904	114.2	1.5e-33	N/A	N/A
PHROG	UHGV-0020247_7	phrog_80	134.5	1.1e-39	head maturation protease	head and packaging
UniRef90	UHGV-0020247_7	UniRef90_R6CCZ0	222.0	0	Phage prohead protease HK97 family	N/A
eggNOG-mapper	UHGV-0020247_7	324057.Pjdr2_1542	195.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0020247_7	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0020247_7	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0020247_7	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0020247_7	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_8	phrog_10	71.5	1.2e-20	major head protein	head and packaging
UniRef90	UHGV-0020247_8	UniRef90_A0A316QDD0	374.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0020247_8	742740.HMPREF9474_04304	228.0	0	Phage capsid family	N/A
Pfam	UHGV-0020247_8	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0020247_8	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0020247_8	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_9	phrog_5223	45.8	0.0000000000008	neck protein	connector
eggNOG-mapper	UHGV-0020247_9	1134413.ANNK01000054_gene2236	47.8	0.0000086	N/A	N/A
PHROG	UHGV-0020247_10	phrog_1951	65.7	5.6e-19	head-tail adaptor	connector
UniRef90	UHGV-0020247_10	UniRef90_A0A2V2GTA0	53.5	0.000000585	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0020247_10	1444310.JANV01000004_gene2678	55.1	0.0000000212	head-tail adaptor	N/A
COG	UHGV-0020247_10	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0020247_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_11	phrog_5	41.9	0.000000000022	tail completion or Neck1 protein	connector
UniRef90	UHGV-0020247_11	UniRef90_A0A658JX18	58.9	0.0000000287	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0020247_11	411470.RUMGNA_02071	62.4	0.00000000027	N/A	N/A
structural_annotation	UHGV-0020247_11	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_13	phrog_88	82.9	4e-24	major tail protein	tail
NCBIFam	UHGV-0020247_13	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0020247_13	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020247_13	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_18	phrog_1533	293.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0020247_18	UniRef90_A0A6S6X9X3	200.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0020247_18	568816.Acin_1333	231.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0020247_18	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0020247_18	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0020247_18	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0020247_18	PF10145,TIGR01760,TIGR01843,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_19	phrog_33	73.6	4.6e-21	distal tail protein Dit	tail
UniRef90	UHGV-0020247_19	UniRef90_V7I5A1	138.0	4.78e-37	Tail protein	N/A
eggNOG-mapper	UHGV-0020247_19	994573.T472_0211980	138.0	8.02e-38	tail component	N/A
COG	UHGV-0020247_19	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0020247_19	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_20	phrog_1067	211.6	0	minor head protein	head and packaging
eggNOG-mapper	UHGV-0020247_20	1443122.Z958_06055	155.0	1.29e-36	Phage minor structural protein	N/A
Pfam	UHGV-0020247_20	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
Pfam	UHGV-0020247_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0020247_20	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0020247_20	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0020247_20	PF14594,PF03422,PF00629,PF13157,PF03211,TIGR01665,NF040827,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020247_21	910314.HMPREF9220_1078	57.4	0.00000000564	N/A	N/A
structural_annotation	UHGV-0020247_21	PF16407,NF032891,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_24	phrog_2649	71.5	1.4e-20	endolysin	lysis
UniRef90	UHGV-0020247_24	UniRef90_A0A1V5Q5W6	293.0	0	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0020247_24	1246484.D479_19733	82.4	0.0000000000000093	Ami_3	N/A
Pfam	UHGV-0020247_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0020247_24	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0020247_24	PF18342,PF01471,PF00877,NF038080,COG4991,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0020247_25	phrog_199	93.5	2.2e-27	holin	lysis
UniRef90	UHGV-0020247_25	UniRef90_A0A7C6FMM1	177.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0020247_25	1216932.CM240_0689	163.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0020247_25	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0020247_25	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0020247_25	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0020247_27	742740.HMPREF9474_00056	55.5	0.000000139	N/A	N/A
KOfam	UHGV-0020247_28	K22300	54.4	0.0000000000000028	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0020247_28	phrog_8	46.4	0.00000000000093	transcriptional regulator	transcription regulation
UniRef90	UHGV-0020247_28	UniRef90_R5VSJ9	55.5	0.0000000132	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0020247_28	1408416.JNJT01000003_gene143	55.5	0.0000000579	sequence-specific DNA binding	N/A
Pfam	UHGV-0020247_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020247_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020247_28	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A