UHGV-0020256 (vOTU-078455)

Viral Genome: UHGV-0020256

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0020256
vOTU ID	vOTU-078455
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_G_6_1094__NODE_1545_length_39454_cov_10.479315
Associated BioSample	SAMEA4765554
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.75 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.31
Jumbo phage	No

Genome content
Genome length (bp)	39,454
GC content	54.74%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	93%
Average CDS length (bps)	631.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.75)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0020256_1	UniRef90_A0A3D3Y5P0	119.0	9.06e-30	N/A	N/A
KOfam	UHGV-0020256_3	K00390	103.0	2.7e-30	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0020256_3	phrog_424	122.2	3.5e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0020256_3	UniRef90_UPI001D087498	426.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0020256_3	1408437.JNJN01000032_gene2312	332.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0020256_3	BrxP_00001	70.4	1.1e-20	BrxP	BREX
Pfam	UHGV-0020256_3	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0020256_3	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0020256_3	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0020256_4	phrog_924	41.7	0.000000000017	N/A	unknown function
UniRef90	UHGV-0020256_4	UniRef90_UPI001C10265C	75.9	0.00000000000000217	N/A	N/A
Pfam	UHGV-0020256_4	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0020256_4	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0020256_5	phrog_3136	132.3	1.8e-39	N/A	unknown function
UniRef90	UHGV-0020256_5	UniRef90_A0A3D0HBD2	157.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0020256_5	642492.Clole_1416	70.1	0.000000000000261	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0020256_5	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0020256_5	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0020256_5	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0020256_6	phrog_38832	68.7	4.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0020256_6	1232443.BAIA02000078_gene48	55.5	0.0000000762	N/A	N/A
structural_annotation	UHGV-0020256_6	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0020256_9	phrog_1770	58.1	1.8e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0020256_9	536233.CLO_1822	135.0	4.6e-38	N/A	N/A
structural_annotation	UHGV-0020256_9	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0020256_13	phrog_801	73.9	2.8e-21	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0020256_13	UniRef90_A0A316M891	95.5	1.91e-22	N/A	N/A
eggNOG-mapper	UHGV-0020256_13	1244856.K4PY83_9CAUD	57.4	0.0000000714	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-0020256_13	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0020256_13	PF18909	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020256_17	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-0020256_19	phrog_15863	159.1	0	N/A	unknown function
UniRef90	UHGV-0020256_19	UniRef90_A0A1Y3R3M0	211.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0020256_19	693746.OBV_01780	184.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0020256_19	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
eggNOG-mapper	UHGV-0020256_20	1232443.BAIA02000078_gene38	57.0	0.0000000212	N/A	N/A
KOfam	UHGV-0020256_22	K06909	139.1	3.59994e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0020256_22	phrog_979	121.7	1.4e-37	terminase large subunit	head and packaging
UniRef90	UHGV-0020256_22	UniRef90_A0A810QAS9	543.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0020256_22	693746.OBV_01690	542.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0020256_22	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0020256_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0020256_22	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020256_23	1519439.JPJG01000011_gene57	102.0	1.04e-25	N/A	N/A
structural_annotation	UHGV-0020256_23	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0020256_24	phrog_14606	46.4	0.00000000000045	N/A	unknown function
eggNOG-mapper	UHGV-0020256_24	755731.Clo1100_2435	55.1	0.00000717	N/A	N/A
PHROG	UHGV-0020256_25	phrog_422	147.4	7.9874e-44	major head protein	head and packaging
UniRef90	UHGV-0020256_25	UniRef90_A0A6A8VJ17	277.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0020256_25	1408437.JNJN01000001_gene1710	231.0	0	N/A	N/A
Pfam	UHGV-0020256_25	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0020256_25	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020256_26	UniRef90_A0A4D7ASB8	483.0	0	N/A	N/A
eggNOG-mapper	UHGV-0020256_26	693746.OBV_01680	513.0	0	N/A	N/A
structural_annotation	UHGV-0020256_26	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0020256_28	phrog_156	130.1	7.1e-39	portal protein	head and packaging
eggNOG-mapper	UHGV-0020256_28	693746.OBV_01670	609.0	0	N/A	N/A
structural_annotation	UHGV-0020256_28	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020256_32	1519439.JPJG01000060_gene1895	130.0	1.92e-35	N/A	N/A
structural_annotation	UHGV-0020256_32	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0020256_33	phrog_27545	147.3	5.74532e-44	N/A	unknown function
UniRef90	UHGV-0020256_33	UniRef90_D1PRE7	155.0	1.4013e-45	Glycosyl hydrolase, family 18 family protein	N/A
eggNOG-mapper	UHGV-0020256_33	1519439.JPJG01000060_gene1895	158.0	0	N/A	N/A
Pfam	UHGV-0020256_33	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
eggNOG-mapper	UHGV-0020256_34	693746.OBV_01600	83.6	0.0000000000000317	N/A	N/A
eggNOG-mapper	UHGV-0020256_35	1519439.JPJG01000011_gene53	321.0	0	N/A	N/A
Pfam	UHGV-0020256_35	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
structural_annotation	UHGV-0020256_36	PF08481,NF033814,COG5456	N/A	N/A	N/A	N/A
KOfam	UHGV-0020256_37	K19719	106.7	4.3e-32	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0020256_37	phrog_819	126.8	3.5e-38	tail protein	tail
eggNOG-mapper	UHGV-0020256_37	1519439.JPJG01000060_gene1892	118.0	3.95e-25	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0020256_37	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0020256_37	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
COG	UHGV-0020256_37	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0020256_37	PF06903	N/A	N/A	N/A	N/A
PHROG	UHGV-0020256_38	phrog_937	47.6	0.00000000000027	hemolysin	other
eggNOG-mapper	UHGV-0020256_38	1519439.JPJG01000023_gene533	48.5	0.00000528	N/A	N/A
PHROG	UHGV-0020256_39	phrog_443	58.0	2.8e-16	holin	lysis
UniRef90	UHGV-0020256_39	UniRef90_UPI000C088FD8	93.6	7.55e-24	holin	N/A
eggNOG-mapper	UHGV-0020256_39	1469948.JPNB01000002_gene3855	92.4	3.64e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0020256_39	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0020256_39	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0020256_40	K01447	91.7	1.1e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0020256_40	phrog_670	117.6	1.6e-34	endolysin	lysis
UniRef90	UHGV-0020256_40	UniRef90_UPI0019D3CF8A	124.0	4.73e-31	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0020256_40	1203606.HMPREF1526_00589	120.0	6.73e-31	Ami_2	N/A
Pfam	UHGV-0020256_40	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0020256_40	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0020256_40	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020256_41	PF04545,MF_00245,TIGR02985,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020256_44	1378168.N510_03079	80.5	3.61e-16	N/A	N/A
KOfam	UHGV-0020256_45	K14059	154.2	1.4013e-45	int; integrase	N/A
PHROG	UHGV-0020256_45	phrog_1	161.4	0	integrase	integration and excision
UniRef90	UHGV-0020256_45	UniRef90_A0A2Z4QB94	239.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0020256_45	1514668.JOOA01000001_gene242	142.0	6.52e-37	Phage integrase family	N/A
Pfam	UHGV-0020256_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0020256_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0020256_45	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0020256_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020256_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020256_46	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020256_47	UniRef90_A0A417HK03	154.0	7.76e-40	S-layer homology domain-containing protein	N/A
eggNOG-mapper	UHGV-0020256_47	1408437.JNJN01000018_gene2332	146.0	1.17e-38	S-layer homology domain	N/A
Pfam	UHGV-0020256_47	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0020256_47	COG5279	N/A	N/A	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	N/A
structural_annotation	UHGV-0020256_47	PF02805	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020256_48	UniRef90_A0A4R5Y4P6	55.1	0.000000113	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0020256_48	1121344.JHZO01000003_gene989	51.6	0.000000618	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0020256_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020256_48	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0020256_48	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0020256_49	K22299	46.2	0.000000000001	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0020256_49	UniRef90_A0A096BAN9	60.5	0.000000000164	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0020256_49	910313.HMPREF9320_0986	48.5	0.00000938	Transcriptional	N/A
Pfam	UHGV-0020256_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020256_49	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0020256_49	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020256_50	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020256_51	760568.Desku_0919	112.0	2.01e-28	N/A	N/A
structural_annotation	UHGV-0020256_51	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020256_52	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020256_54	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020256_57	PF14634	N/A	N/A	N/A	N/A
PHROG	UHGV-0020256_58	phrog_4433	61.8	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0020256_58	445970.ALIPUT_01592	89.7	1.36e-18	DNA-templated transcription, initiation	N/A
COG	UHGV-0020256_58	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A