UHGV-0020343 (vOTU-065330)

Viral Genome: UHGV-0020343

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0020343
vOTU ID	vOTU-065330
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_15_1703__NODE_1635_length_42134_cov_7.696222
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.84 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.42
Jumbo phage	No

Genome content
Genome length (bp)	42,134
GC content	58.85%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	88%
Average CDS length (bps)	677.46
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0020343_2	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0020343_3	K01185	89.5	5.9e-26	E3.2.1.17; lysozyme [EC:3.2.1.17]	N/A
PHROG	UHGV-0020343_3	phrog_7	116.5	2.7e-34	endolysin	lysis
UniRef90	UHGV-0020343_3	UniRef90_A0A3D1LC07	120.0	1.59e-29	SLH domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0020343_3	1514668.JOOA01000002_gene1588	117.0	7.39e-28	lysozyme	N/A
Pfam	UHGV-0020343_3	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme
COG	UHGV-0020343_3	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
PHROG	UHGV-0020343_4	phrog_9233	76.5	3.1e-22	holin	lysis
UniRef90	UHGV-0020343_4	UniRef90_R7EEV6	93.2	1.29e-23	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0020343_4	742740.HMPREF9474_02251	99.8	6.29e-27	Putative phage holin Dp-1	N/A
Pfam	UHGV-0020343_4	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0020343_4	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0020343_6	phrog_4105	46.9	0.00000000000042	N/A	unknown function
PHROG	UHGV-0020343_8	phrog_18805	89.3	1.6e-34	N/A	unknown function
UniRef90	UHGV-0020343_8	UniRef90_A0A411ZUM8	119.0	5.56e-26	Leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-0020343_8	471875.RUMLAC_02240	127.0	1.68e-29	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-0020343_8	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
NCBIFam	UHGV-0020343_8	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
COG	UHGV-0020343_8	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020343_8	PF13306,NF041351	N/A	N/A	N/A	N/A
KOfam	UHGV-0020343_9	K13884	125.1	4.5e-37	MARCO; macrophage receptor with collagenous structure	N/A
PHROG	UHGV-0020343_9	phrog_6320	84.2	5.1e-38	tail fiber protein	tail
eggNOG-mapper	UHGV-0020343_9	1128111.HMPREF0870_01752	70.1	0.00000000094	N/A	N/A
Pfam	UHGV-0020343_9	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0020343_11	phrog_371	104.9	7.7e-31	major head protein	head and packaging
UniRef90	UHGV-0020343_11	UniRef90_R6TFU9	199.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0020343_11	1226322.HMPREF1545_03848	226.0	0	N/A	N/A
Pfam	UHGV-0020343_11	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0020343_11	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0020343_12	phrog_24113	105.0	4.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-0020343_12	1226322.HMPREF1545_03847	90.5	1.95e-21	N/A	N/A
structural_annotation	UHGV-0020343_12	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0020343_13	phrog_35275	132.6	1.10002e-41	N/A	unknown function
eggNOG-mapper	UHGV-0020343_13	1226322.HMPREF1545_03846	112.0	5.17e-26	N/A	N/A
UniRef90	UHGV-0020343_15	UniRef90_U2SNH2	986.0	0	LPD23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020343_15	1226322.HMPREF1545_00787	986.0	0	N/A	N/A
Pfam	UHGV-0020343_15	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
eggNOG-mapper	UHGV-0020343_16	1226322.HMPREF1545_00786	84.7	0.00000000000000358	N/A	N/A
PHROG	UHGV-0020343_17	phrog_511	151.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0020343_17	1519439.JPJG01000060_gene1903	254.0	0	N/A	N/A
structural_annotation	UHGV-0020343_17	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0020343_19	phrog_156	266.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0020343_19	1519439.JPJG01000060_gene1886	533.0	0	N/A	N/A
structural_annotation	UHGV-0020343_19	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0020343_20	phrog_2	84.7	1.1e-24	terminase large subunit	head and packaging
UniRef90	UHGV-0020343_20	UniRef90_R5AHR8	552.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0020343_20	693746.OBV_23980	504.0	0	phage Terminase large subunit	N/A
COG	UHGV-0020343_20	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0020343_20	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020343_21	1226322.HMPREF1545_03842	78.2	0.0000000000000021	DNA-packaging protein gp3	N/A
structural_annotation	UHGV-0020343_21	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020343_22	1226322.HMPREF1545_00288	55.8	0.00000000982	N/A	N/A
PHROG	UHGV-0020343_23	phrog_3584	92.2	4.5e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0020343_23	1226322.HMPREF1545_03841	114.0	1.45e-27	N/A	N/A
structural_annotation	UHGV-0020343_23	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0020343_26	phrog_1233	67.1	2.7e-19	N/A	unknown function
UniRef90	UHGV-0020343_26	UniRef90_UPI0018CCF79E	53.5	0.00000122	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0020343_26	1123405.AUMM01000039_gene158	55.8	0.0000000241	N/A	N/A
UniRef90	UHGV-0020343_31	UniRef90_A0A8D9PDT5	52.4	0.00000123	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-0020343_32	phrog_924	42.9	0.000000000011	N/A	unknown function
UniRef90	UHGV-0020343_32	UniRef90_UPI0018676FFF	50.1	0.00000401	N/A	N/A
Pfam	UHGV-0020343_32	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0020343_33	phrog_111	163.4	0	DNA methyltransferase	other
UniRef90	UHGV-0020343_33	UniRef90_A0A1Y4EVK6	216.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0020343_33	1121121.KB894312_gene3179	186.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0020343_33	oMTase_00015	193.1	0	orphan methyltransferase	RM
Pfam	UHGV-0020343_33	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0020343_33	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020343_36	693746.OBV_24030	61.2	0.00000000407	N/A	N/A
structural_annotation	UHGV-0020343_37	PF19885	N/A	N/A	N/A	N/A
PHROG	UHGV-0020343_42	phrog_7566	101.0	5.5e-30	N/A	unknown function
UniRef90	UHGV-0020343_42	UniRef90_A0A8D9UHC0	118.0	6.32e-33	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0020343_42	1007096.BAGW01000031_gene114	136.0	1.36999e-40	N/A	N/A
KOfam	UHGV-0020343_48	K22300	64.6	2.1e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0020343_48	phrog_8	50.6	0.000000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0020343_48	UniRef90_A0A1Y4F6Q1	109.0	1.53e-28	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0020343_48	1280698.AUJS01000007_gene1002	99.0	1.23e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0020343_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020343_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020343_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0020343_49	phrog_33519	143.9	7.20267e-43	N/A	unknown function
eggNOG-mapper	UHGV-0020343_49	1507.HMPREF0262_01197	138.0	9.23999e-40	N/A	N/A
structural_annotation	UHGV-0020343_49	PF13958,NF010262,COG2337	N/A	N/A	N/A	N/A
Pfam	UHGV-0020343_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0020343_52	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0020343_53	K06400	346.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0020343_53	phrog_95	342.9	0	integrase	integration and excision
UniRef90	UHGV-0020343_53	UniRef90_G4KP73	457.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-0020343_53	693746.OBV_21880	457.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0020343_53	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0020343_53	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0020343_53	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0020343_53	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0020343_53	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020343_54	UniRef90_A0A843GWV6	81.6	4.77e-18	Rubrerythrin domain-containing protein	N/A