UHGV-0020515 (vOTU-003422)

Viral Genome: UHGV-0020515

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0020515
vOTU ID	vOTU-003422
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_D_1_1951__NODE_1058_length_46097_cov_36.035246
Associated BioSample	SAMEA4766126
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9775
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.17
Jumbo phage	No

Genome content
Genome length (bp)	46,020
GC content	52.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	78
CDS density	92%
Average CDS length (bps)	545.46
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0020515_1	phrog_4433	83.3	3.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0020515_1	886882.PPSC2_p0363	107.0	2.18e-25	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0020515_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0020515_4	PF05339,TIGR00673,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_6	phrog_585	92.4	4.6e-27	N/A	unknown function
UniRef90	UHGV-0020515_6	UniRef90_UPI00036354E4	112.0	3.73e-29	N/A	N/A
eggNOG-mapper	UHGV-0020515_6	1033744.CAEL01000029_gene1306	95.5	6.68e-23	N/A	N/A
Pfam	UHGV-0020515_6	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0020515_6	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020515_8	UniRef90_A0A417ABT7	60.8	0.0000000000942	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020515_8	1226325.HMPREF1548_06746	47.0	0.00000969	N/A	N/A
structural_annotation	UHGV-0020515_8	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_9	phrog_8	42.4	0.000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0020515_9	UniRef90_A0A0X1U7Q0	87.4	3.98e-19	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0020515_9	1507.HMPREF0262_01301	58.5	0.00000000278	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0020515_9	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0020515_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0020515_12	PF19818,TIGR03931	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020515_13	742740.HMPREF9474_00056	53.1	0.00000728	N/A	N/A
Pfam	UHGV-0020515_13	PF12855	N/A	N/A	ECL1/2/3 zinc binding proteins	Ecl1
structural_annotation	UHGV-0020515_13	PF09889,COG4068	N/A	N/A	N/A	N/A
KOfam	UHGV-0020515_15	K14059	178.7	0	int; integrase	N/A
PHROG	UHGV-0020515_15	phrog_1	164.6	0	integrase	integration and excision
UniRef90	UHGV-0020515_15	UniRef90_A0A1C6FZN9	331.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0020515_15	1507.HMPREF0262_00420	275.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0020515_15	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0020515_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0020515_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0020515_15	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0020515_19	K22300	55.7	7.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0020515_19	phrog_8	49.7	0.000000000000041	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0020515_19	1280666.ATVS01000005_gene2429	59.3	0.0000000227	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0020515_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020515_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020515_19	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_25	phrog_14030	125.7	2.3e-37	N/A	unknown function
UniRef90	UHGV-0020515_25	UniRef90_A0A1C5M3C8	188.0	0	Autolysin	N/A
eggNOG-mapper	UHGV-0020515_25	411461.DORFOR_00720	178.0	0	N/A	N/A
Pfam	UHGV-0020515_25	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
structural_annotation	UHGV-0020515_25	PF18342,NF041850,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_26	phrog_4912	63.4	4.3e-18	tail fiber assembly	tail
UniRef90	UHGV-0020515_26	UniRef90_UPI0011DCDC2D	124.0	2.08e-33	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0020515_26	1500897.JQNA01000002_gene1066	55.8	0.0000000572	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-0020515_26	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0020515_26	PF16778	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_27	phrog_19280	160.8	0	N/A	unknown function
UniRef90	UHGV-0020515_27	UniRef90_A0A1Q6JJX5	496.0	0	N/A	N/A
eggNOG-mapper	UHGV-0020515_27	1226322.HMPREF1545_03571	97.4	1.98e-18	cellulose binding	N/A
Pfam	UHGV-0020515_27	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0020515_27	COG4447	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020515_27	PF19789,PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020515_28	1485543.JMME01000005_gene881	61.6	0.000000000116	N/A	N/A
structural_annotation	UHGV-0020515_28	PF16407,NF032891,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_30	phrog_6616	162.9	0	tail protein	tail
eggNOG-mapper	UHGV-0020515_30	1158612.I580_01923	63.9	0.000000261	outer membrane autotransporter barrel domain protein	N/A
COG	UHGV-0020515_30	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0020515_31	phrog_1194	102.6	2.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0020515_31	1432847.V5UQS8_9VIRU	79.0	3.97e-17	N/A	N/A
Pfam	UHGV-0020515_31	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0020515_31	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_32	phrog_1535	94.0	8e-29	tail length tape measure protein	tail
COG	UHGV-0020515_32	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0020515_34	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020515_35	1298920.KI911353_gene2652	158.0	0	N/A	N/A
structural_annotation	UHGV-0020515_35	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020515_36	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020515_38	1121866.AUGK01000003_gene1432	49.7	0.0000078	N/A	N/A
UniRef90	UHGV-0020515_39	UniRef90_A0A845R6M6	110.0	2.74e-29	DNA-packaging protein	N/A
Pfam	UHGV-0020515_39	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0020515_39	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_40	phrog_1328	124.5	6.2e-37	major head protein	head and packaging
UniRef90	UHGV-0020515_40	UniRef90_UPI00164DD2D5	520.0	0	N/A	N/A
eggNOG-mapper	UHGV-0020515_40	665956.HMPREF1032_03619	222.0	0	N/A	N/A
Pfam	UHGV-0020515_40	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0020515_40	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_42	phrog_595	47.6	0.00000000000024	head maturation protease	head and packaging
Pfam	UHGV-0020515_42	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0020515_42	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0020515_42	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020515_42	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_43	phrog_64	230.3	0	portal protein	head and packaging
UniRef90	UHGV-0020515_43	UniRef90_UPI001D08CF6B	375.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0020515_43	1123263.AUKY01000015_gene1609	315.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0020515_43	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0020515_43	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_44	phrog_38	184.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0020515_44	UniRef90_UPI000419A6BC	412.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0020515_44	1121866.AUGK01000003_gene1428	412.0	0	chromosome segregation	N/A
COG	UHGV-0020515_44	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020515_44	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020515_45	1235793.C809_00539	71.2	0.000000000000891	N/A	N/A
structural_annotation	UHGV-0020515_45	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020515_50	1392487.JIAD01000001_gene536	62.4	0.000000000269	sigma factor activity	N/A
COG	UHGV-0020515_50	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
KOfam	UHGV-0020515_52	K03111	149.7	2.66247e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0020515_52	phrog_44	148.1	4.48416e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020515_52	UniRef90_A0A1V5KEV3	150.0	4.62428e-44	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020515_52	1042163.BRLA_c031440	122.0	6.14e-34	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0020515_52	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0020515_52	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0020515_52	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0020515_52	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0020515_52	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_53	phrog_2245	49.0	0.000000000000076	nucleoside triphosphate pyrophosphohydrolase	other
COG	UHGV-0020515_56	COG0504	N/A	N/A	CTP synthase (UTP-ammonia lyase)	N/A
structural_annotation	UHGV-0020515_56	PF20204	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_59	phrog_6568	69.3	3.8e-20	N/A	unknown function
PHROG	UHGV-0020515_61	phrog_6721	162.8	0	N/A	unknown function
UniRef90	UHGV-0020515_61	UniRef90_A0A373Q5P7	551.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0020515_61	411473.RUMCAL_00916	174.0	0	N/A	N/A
PADLOC	UHGV-0020515_61	HEase_00016	84.6	2.6e-24	homing endonuclease	RM
Pfam	UHGV-0020515_61	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0020515_61	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0020515_61	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
structural_annotation	UHGV-0020515_61	PF02796,PF07463,TIGR02170	N/A	N/A	N/A	N/A
KOfam	UHGV-0020515_63	K03091	93.7	2.6e-27	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-0020515_63	phrog_351	75.0	3e-24	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0020515_63	UniRef90_R7L1F2	65.5	0.00000000154	RNA polymerase sigma factor	N/A
Pfam	UHGV-0020515_63	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0020515_63	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
NCBIFam	UHGV-0020515_63	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0020515_63	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0020515_63	PF04542,PF08281,MF_00962,NF004471,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0020515_72	K01160	56.8	6.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0020515_72	phrog_34	57.1	3.7e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020515_72	UniRef90_A0A371IJT7	146.0	7.65109e-43	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0020515_72	796940.HMPREF9628_00163	144.0	1.15047e-42	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0020515_72	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0020515_72	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0020515_72	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_73	phrog_11769	175.3	0	N/A	unknown function
UniRef90	UHGV-0020515_73	UniRef90_UPI000407F2BC	178.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0020515_73	536232.CLM_1634	170.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0020515_73	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-0020515_73	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0020515_73	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0020515_73	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_74	phrog_2113	44.5	0.0000000000018	N/A	unknown function
UniRef90	UHGV-0020515_74	UniRef90_A0A3A6EZF7	52.4	0.00000138	HTH domain-containing protein	N/A
structural_annotation	UHGV-0020515_74	PF08220,TIGR00122,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_75	phrog_253	120.6	1.1e-35	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020515_75	UniRef90_UPI00188A68AB	91.3	3.21e-20	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0020515_75	1220589.CD32_00550	83.6	4.77e-18	Siphovirus Gp157	N/A
Pfam	UHGV-0020515_75	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0020515_75	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_76	phrog_7838	129.6	2.6e-38	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0020515_76	742767.HMPREF9456_02397	185.0	0	N/A	N/A
structural_annotation	UHGV-0020515_76	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0020515_78	phrog_27197	66.5	1.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0020515_78	445970.ALIPUT_01221	70.1	0.00000000000171	DNA-templated transcription, initiation	N/A
COG	UHGV-0020515_78	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0020515_78	NF007410	N/A	N/A	N/A	N/A