UHGV-0020653 (vOTU-077745)

Viral Genome: UHGV-0020653

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0020653
vOTU ID	vOTU-077745
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_4_1815__NODE_1040_length_39654_cov_5.668014
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9775
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.38
Jumbo phage	No

Genome content
Genome length (bp)	39,654
GC content	36.09%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	77
CDS density	95%
Average CDS length (bps)	487.05
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0020653_3	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_4	phrog_16490	92.2	3.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0020653_4	397290.C810_05212	95.5	1.26e-20	N/A	N/A
PHROG	UHGV-0020653_6	phrog_21718	76.2	5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0020653_6	397290.C810_05210	70.1	0.000000000000394	N/A	N/A
Pfam	UHGV-0020653_7	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0020653_7	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_8	phrog_2310	42.4	0.0000000000071	N/A	unknown function
structural_annotation	UHGV-0020653_9	PF16640,NF032891	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020653_10	PF09693,TIGR01669	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020653_11	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_12	phrog_372	197.7	0	tail protein	tail
UniRef90	UHGV-0020653_12	UniRef90_A0A415H839	167.0	4.68006e-41	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0020653_12	764299.STRIC_1425	90.1	1.44e-16	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0020653_12	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0020653_12	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0020653_12	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_13	phrog_1067	365.2	0	minor head protein	head and packaging
UniRef90	UHGV-0020653_13	UniRef90_A0A7G9G6Y3	449.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0020653_13	1123263.AUKY01000068_gene489	393.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0020653_13	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0020653_13	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
NCBIFam	UHGV-0020653_13	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0020653_13	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0020653_13	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020653_14	UniRef90_A0A1C5W6B6	162.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0020653_14	1123263.AUKY01000068_gene490	155.0	3.22299e-44	tail component	N/A
COG	UHGV-0020653_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0020653_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_15	phrog_58	212.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0020653_15	UniRef90_A0A1C6EH41	192.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0020653_15	471855.Shel_15470	256.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0020653_15	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0020653_15	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_17	phrog_881	74.8	6.6e-22	holin	lysis
UniRef90	UHGV-0020653_17	UniRef90_A0A7Y0HUK7	72.0	0.00000000000000807	Holin	N/A
eggNOG-mapper	UHGV-0020653_17	326426.Bbr_0318	72.0	0.00000000000000139	Putative phage holin Dp-1	N/A
Pfam	UHGV-0020653_17	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0020653_17	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_18	phrog_11037	50.3	0.000000000000036	N/A	unknown function
UniRef90	UHGV-0020653_18	UniRef90_A0A2V2EB84	81.3	0.0000000000000131	EF-hand domain-containing protein	N/A
eggNOG-mapper	UHGV-0020653_18	1235796.C815_00900	73.9	0.00000000000179	N/A	N/A
Pfam	UHGV-0020653_18	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
PHROG	UHGV-0020653_21	phrog_885	77.0	2e-22	major tail protein	tail
UniRef90	UHGV-0020653_21	UniRef90_A0A843J9F0	164.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0020653_21	1111121.HMPREF1247_0789	206.0	0	N/A	N/A
structural_annotation	UHGV-0020653_21	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020653_22	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_23	phrog_17977	76.5	2.6e-22	N/A	unknown function
UniRef90	UHGV-0020653_23	UniRef90_A0A285PT57	128.0	3.39e-36	Phage head-tail joining protein	N/A
Pfam	UHGV-0020653_23	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0020653_23	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_25	phrog_544	219.2	0	major head protein	head and packaging
UniRef90	UHGV-0020653_25	UniRef90_A0A0D0SBF1	424.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0020653_25	1256908.HMPREF0373_00476	443.0	0	N/A	N/A
NCBIFam	UHGV-0020653_25	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0020653_25	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020653_26	320843.Q4ZBR6_9CAUD	53.5	0.00000357	Phage minor structural protein GP20	N/A
structural_annotation	UHGV-0020653_26	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_27	phrog_5	83.6	3.2e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-0020653_27	UniRef90_A0A6A8M6L6	110.0	9.44e-29	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0020653_27	1504822.CCNO01000013_gene284	107.0	1.37e-28	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0020653_27	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0020653_27	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0020653_27	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_29	phrog_595	113.8	1.8e-33	head maturation protease	head and packaging
UniRef90	UHGV-0020653_29	UniRef90_A0A285PUG1	225.0	0	Phage head morphogenesis domain	N/A
eggNOG-mapper	UHGV-0020653_29	1280685.AUKC01000004_gene1632	191.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0020653_29	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0020653_29	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0020653_29	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_30	phrog_64	157.7	0	portal protein	head and packaging
UniRef90	UHGV-0020653_30	UniRef90_A0A285PU84	424.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0020653_30	673376.F2VHW1_9CAUD	214.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0020653_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0020653_30	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0020653_31	K06909	97.1	1.6e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0020653_31	phrog_10250	161.6	0	N/A	unknown function
UniRef90	UHGV-0020653_31	UniRef90_A0A2N2CXF0	437.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0020653_31	1292035.H476_1019	310.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0020653_31	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0020653_31	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0020653_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0020653_31	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020653_41	1123263.AUKY01000015_gene1588	50.4	0.00000111	N/A	N/A
Pfam	UHGV-0020653_41	PF09297	N/A	N/A	NADH pyrophosphatase zinc ribbon domain	zf-NADH-PPase
PHROG	UHGV-0020653_42	phrog_10714	40.3	0.000000000052	N/A	unknown function
PHROG	UHGV-0020653_44	phrog_1233	98.8	5e-29	N/A	unknown function
UniRef90	UHGV-0020653_44	UniRef90_UPI001D077F84	124.0	5.27e-35	basic secretory family protein	N/A
eggNOG-mapper	UHGV-0020653_44	936375.HMPREF1152_1074	106.0	2.1e-28	N/A	N/A
KOfam	UHGV-0020653_49	K00558	170.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0020653_49	phrog_116	192.2	0	DNA methyltransferase	other
UniRef90	UHGV-0020653_49	UniRef90_A0A3R6DF97	527.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0020653_49	1499683.CCFF01000005_gene54	442.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0020653_49	MTase_II_00058	171.7	0	Type II methyltransferase	RM
Pfam	UHGV-0020653_49	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0020653_49	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0020653_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0020653_49	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_50	phrog_5968	167.4	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020653_50	UniRef90_A0A1S8PH11	207.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0020653_50	457412.RSAG_04664	138.0	9.37e-38	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-0020653_50	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0020653_50	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0020653_50	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0020653_51	K01160	54.7	0.0000000000000031	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0020653_51	phrog_140	131.2	5.7e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020653_51	UniRef90_A0A3N0HYL6	118.0	1.03e-31	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0020653_51	1095750.HMPREF9970_1673	113.0	1.91e-30	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0020653_51	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0020653_51	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0020653_51	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_52	phrog_7566	80.9	1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0020653_52	508419.F8J187_9CAUD	75.1	2.61e-16	N/A	N/A
PHROG	UHGV-0020653_53	phrog_1389	44.9	0.000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0020653_53	1347392.CCEZ01000060_gene3269	60.1	0.000000000374	N/A	N/A
structural_annotation	UHGV-0020653_53	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
KOfam	UHGV-0020653_54	K03111	122.9	4.2e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0020653_54	phrog_44	126.1	2.7e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020653_54	UniRef90_UPI00177D1FCE	123.0	1.12e-33	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020653_54	562743.JH976434_gene1038	115.0	2.93e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0020653_54	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0020653_54	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0020653_54	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0020653_54	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0020653_54	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_56	phrog_6244	102.2	5.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-0020653_56	508419.F8J183_9CAUD	70.9	0.0000000000000185	N/A	N/A
structural_annotation	UHGV-0020653_56	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0020653_57	phrog_14970	274.9	0	N/A	unknown function
UniRef90	UHGV-0020653_57	UniRef90_UPI00123F00F5	204.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0020653_57	697329.Rumal_1121	198.0	0	double-strand break repair protein	N/A
COG	UHGV-0020653_57	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0020653_57	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020653_59	646529.Desaci_4557	52.8	0.00000393	sequence-specific DNA binding	N/A
COG	UHGV-0020653_59	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-0020653_60	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0020653_60	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0020653_61	K22300	58.8	1.3e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0020653_61	phrog_8	61.6	1.8e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0020653_61	UniRef90_A0A5F0MF03	60.1	0.000000000434	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0020653_61	768704.Desmer_1964	54.3	0.0000000153	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0020653_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020653_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-0020653_63	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
eggNOG-mapper	UHGV-0020653_70	547042.BACCOPRO_02131	45.8	0.00000779	N/A	N/A
PHROG	UHGV-0020653_73	phrog_3754	55.4	9.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0020653_73	1278311.AUAL01000001_gene36	68.6	0.000000000000653	N/A	N/A
KOfam	UHGV-0020653_75	K22300	45.1	0.0000000000019	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0020653_75	phrog_4	40.3	0.000000000066	transcriptional repressor	transcription regulation
UniRef90	UHGV-0020653_75	UniRef90_UPI001873D032	94.7	1.88e-22	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0020653_75	887325.HMPREF0381_0352	90.9	8.19e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0020653_75	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020653_75	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0020653_75	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0020653_77	K14059	126.6	3.6e-37	int; integrase	N/A
PHROG	UHGV-0020653_77	phrog_1	122.2	6e-36	integrase	integration and excision
UniRef90	UHGV-0020653_77	UniRef90_A0A412PAQ5	230.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0020653_77	1123263.AUKY01000072_gene2117	167.0	1.4013e-45	Phage integrase family	N/A
Pfam	UHGV-0020653_77	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0020653_77	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0020653_77	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A